Rw2G050190

Belongs to the nucleosome assembly protein (NAP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0003408
Physical Location & Seq
Reverse (-)
77833778 .. 77836897
3120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G050190.1

Sequence Viewer

Length: 765 bp
ATGGTGGCGGACAAGGCGAAGAAGGCCAAGCTCGCCGAGAGAGCTCCGGAGGAGAACCACGACGCCGATCAGATTGATGGCGACCTCGTACTTTCCATCGAGAAGTTGCAGGAGGCTCAAGACGACCTCGAGAAGGTTAATGAAGAAGCCAGTGACAAGGTGTTGGAAGTTGAGCAGAAGTATAATGTGATACGCAGACCGGTCTATTTGAAACGGAATGAAATAATAAAAACCATTCCTGACTTCTGGCTAACTGCTTTCCTTAGCCATCCTGCACTAAGCGATCTATTGAGTGAGGAAGACCAGAAGATCTTCAAGTATTTAAGTTCTCTTGATGTGGAGGACTTCAAAGATGTTAAGTCAGGTTATGCTATCAGATTTAACTTTAACGAGAACCCTTATTTTGAAGATACAAAGCTGACTAAAACCTTCACATTCTTTGATGATGGGACAACTAAAATTGCTGGCACCACCATCAAGTGGAAGGAGGGCATGGGTGTAGCAAATGGAGTCAATCACGGGAAAAAGGGAAACAAACGACCACCTGCTGAGGAGAGCTTCTTCAGTTGGTTTAGTGAAACTGAGCAGAAAGACATAGCTGAGTTTCAGGATGAGGTGGCAGAGATAATTAAGGAGGATTTATGGCCCAATCCTCTAAAGTACTTCAACAATGAGGCAGATGAAGAGGACTCTGAAGGTGATGAAGAGGAGAATGGTGATGATGATGACAATAATGGAGAAGAAGATACTGAGGGAGATAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005811 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006337 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009894 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010563 GO:0010605 GO:0010608 GO:0010629 GO:0010639 GO:0010921 GO:0010923 GO:0010941 GO:0012505 GO:0016043 GO:0019208 GO:0019212 GO:0019219 GO:0019220 GO:0019222 GO:0019888 GO:0022411 GO:0022607 GO:0030234 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031329 GO:0031399 GO:0031400 GO:0031497 GO:0031498 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032515 GO:0032984 GO:0032986 GO:0032991 GO:0033043 GO:0033044 GO:0034622 GO:0034641 GO:0034645 GO:0034728 GO:0035065 GO:0035067 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0042393 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0043523 GO:0043524 GO:0043666 GO:0043933 GO:0044085 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0045936 GO:0046483 GO:0048471 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0051336 GO:0051346 GO:0060255 GO:0060548 GO:0061013 GO:0065003 GO:0065004 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0098772 GO:1901214 GO:1901215 GO:1901360 GO:1901576 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903311 GO:1903506 GO:1903507 GO:1905268 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAP

Protein Analysis

254

Amino Acids

29.1

Weight (kDa)

4.33

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 77 - 224 1.6e-27 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 553
Acc36I ACCTGC 1 cut(s) 553
AccB1I GGYRCC 1 cut(s) 467
AccB7I CCANNNNNTGG 1 cut(s) 480
AccIII TCCGGA 1 cut(s) 46
AciI CCGC 1 cut(s) 8
AcuI CTGAAG 2 cut(s) 547, 714
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 2 cut(s) 90, 662
AfiI CCNNNNNNNGG 2 cut(s) 133, 480
AgeI ACCGGT 1 cut(s) 199
AgsI TTSAA 5 cut(s) 211, 316, 349, 407, 667
AluBI AGCT 6 cut(s) 31, 44, 418, 558, 599, 762
AluI AGCT 6 cut(s) 31, 44, 418, 558, 599, 762
Alw21I GWGCWC 1 cut(s) 46
Ama87I CYCGRG 1 cut(s) 128
Aor13HI TCCGGA 1 cut(s) 46
AoxI GGCC 2 cut(s) 24, 644
AsiGI ACCGGT 1 cut(s) 199
Asp700I GAANNNNTTC 1 cut(s) 311
AspS9I GGNCC 1 cut(s) 645
AsuHPI GGTGA 2 cut(s) 710, 728
AvaI CYCGRG 1 cut(s) 128
BanI GGYRCC 1 cut(s) 467
BanII GRGCYC 1 cut(s) 46
BbsI GAAGAC 1 cut(s) 306
Bbv12I GWGCWC 1 cut(s) 46
BbvCI CCTCAGC 1 cut(s) 549
BccI CCATC 5 cut(s) 71, 104, 276, 440, 482
BfuAI ACCTGC 1 cut(s) 553
BglII AGATCT 1 cut(s) 309
BmcAI AGTACT 1 cut(s) 662
BmeT110I CYCGRG 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 645
BmiI GGNNCC 1 cut(s) 469
BpiI GAAGAC 1 cut(s) 306
Bpu10I CCTNAGC 2 cut(s) 263, 549
BpuEI CTTGAG 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 63
BsaWI WCCGGW 2 cut(s) 46, 199
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 480
Bse118I RCCGGY 1 cut(s) 199
Bse1I ACTGG 1 cut(s) 150
BseAI TCCGGA 1 cut(s) 46
BseGI GGATG 2 cut(s) 268, 616
BseLI CCNNNNNNNGG 2 cut(s) 133, 480
BseMII CTCAG 4 cut(s) 540, 573, 591, 741
BseNI ACTGG 1 cut(s) 150
BseRI GAGGAG 3 cut(s) 65, 566, 722
BsgI GTGCAG 1 cut(s) 258
BshFI GGCC 2 cut(s) 26, 646
BshNI GGYRCC 1 cut(s) 467
BshTI ACCGGT 1 cut(s) 199
BsiHKAI GWGCWC 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 2 cut(s) 47, 200
BslFI GGGAC 1 cut(s) 463
BslI CCNNNNNNNGG 2 cut(s) 133, 480
BsmFI GGGAC 1 cut(s) 463
BsnI GGCC 2 cut(s) 26, 646
BsoBI CYCGRG 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 46
Bsp13I TCCGGA 1 cut(s) 46
Bsp143I GATC 3 cut(s) 67, 283, 309
BspACI CCGC 1 cut(s) 8
BspANI GGCC 2 cut(s) 26, 646
BspCNI CTCAG 4 cut(s) 541, 574, 592, 742
BspEI TCCGGA 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 469
BspMI ACCTGC 1 cut(s) 553
BspT107I GGYRCC 1 cut(s) 467
BsrFI RCCGGY 1 cut(s) 199
BsrI ACTGG 1 cut(s) 150
BssAI RCCGGY 1 cut(s) 199
BssMI GATC 3 cut(s) 67, 283, 309
BssNI GRCGYC 1 cut(s) 63
Bst6I CTCTTC 2 cut(s) 678, 699
BstACI GRCGYC 1 cut(s) 63
BstC8I GCNNGC 2 cut(s) 33, 466
BstDEI CTNAG 6 cut(s) 263, 278, 549, 582, 600, 750
BstENI CCTNNNNNAGG 1 cut(s) 131
BstF5I GGATG 2 cut(s) 268, 616
BstKTI GATC 3 cut(s) 70, 286, 312
BstMBI GATC 3 cut(s) 67, 283, 309
BstMWI GCNNNNNNNGC 4 cut(s) 14, 23, 32, 41
BstV2I GAAGAC 1 cut(s) 306
BstX2I RGATCY 1 cut(s) 309
BstYI RGATCY 1 cut(s) 309
BsuRI GGCC 2 cut(s) 26, 646
BtsCI GGATG 2 cut(s) 268, 616
BtsIMutI CAGTG 1 cut(s) 157
BveI ACCTGC 1 cut(s) 553
Cac8I GCNNGC 2 cut(s) 33, 466
Cfr10I RCCGGY 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 645
CseI GACGC 1 cut(s) 71
Csp6I GTAC 2 cut(s) 89, 661
CspAI ACCGGT 1 cut(s) 199
CviAII CATG 1 cut(s) 493
CviQI GTAC 2 cut(s) 89, 661
DdeI CTNAG 6 cut(s) 263, 278, 549, 582, 600, 750
DpnI GATC 3 cut(s) 69, 285, 311
DpnII GATC 3 cut(s) 67, 283, 309
Eam1104I CTCTTC 2 cut(s) 678, 699
EarI CTCTTC 2 cut(s) 678, 699
EciI GGCGGA 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 46
Eco53kI GAGCTC 1 cut(s) 44
Eco57I CTGAAG 2 cut(s) 547, 714
Eco88I CYCGRG 1 cut(s) 128
EcoICRI GAGCTC 1 cut(s) 44
EcoNI CCTNNNNNAGG 1 cut(s) 131
EcoT38I GRGCYC 1 cut(s) 46
FaeI CATG 1 cut(s) 496
FaiI YATR 5 cut(s) 183, 369, 494, 596, 643
FaqI GGGAC 1 cut(s) 463
FatI CATG 1 cut(s) 492
FokI GGATG 2 cut(s) 255, 623
FriOI GRGCYC 1 cut(s) 46
HaeIII GGCC 2 cut(s) 26, 646
HapII CCGG 2 cut(s) 47, 200
HgaI GACGC 1 cut(s) 71
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 1 cut(s) 496
HinfI GANTC 2 cut(s) 510, 689
HpaII CCGG 2 cut(s) 47, 200
HphI GGTGA 2 cut(s) 710, 728
Hpy188I TCNGA 3 cut(s) 72, 377, 694
Hpy188III TCNNGA 7 cut(s) 47, 100, 119, 130, 239, 332, 608
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 5 cut(s) 16, 127, 439, 478, 689
HpyCH4V TGCA 2 cut(s) 109, 275
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 23, 32, 41
HpyF3I CTNAG 6 cut(s) 263, 278, 549, 582, 600, 750
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 1 cut(s) 496
Kpn2I TCCGGA 1 cut(s) 46
Kzo9I GATC 3 cut(s) 67, 283, 309
LmnI GCTCC 1 cut(s) 49
MaeIII GTNAC 1 cut(s) 152
MalI GATC 3 cut(s) 69, 285, 311
MboI GATC 3 cut(s) 67, 283, 309
MflI RGATCY 1 cut(s) 309
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 2 cut(s) 459, 627
MlyI GAGTC 2 cut(s) 519, 683
MmeI TCCRAC 1 cut(s) 144
MroI TCCGGA 1 cut(s) 46
MroXI GAANNNNTTC 1 cut(s) 311
MseI TTAA 6 cut(s) 138, 323, 357, 381, 387, 630
MspI CCGG 2 cut(s) 47, 200
MwoI GCNNNNNNNGC 4 cut(s) 14, 23, 32, 41
NdeII GATC 3 cut(s) 67, 283, 309
NlaIII CATG 1 cut(s) 496
NlaIV GGNNCC 1 cut(s) 469
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 1 cut(s) 152
PaeR7I CTCGAG 1 cut(s) 128
PaqCI CACCTGC 1 cut(s) 553
PdmI GAANNNNTTC 1 cut(s) 311
PflMI CCANNNNNTGG 1 cut(s) 480
PinAI ACCGGT 1 cut(s) 199
PleI GAGTC 2 cut(s) 518, 683
PpsI GAGTC 2 cut(s) 518, 683
Psp124BI GAGCTC 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 469
PspPI GGNCC 1 cut(s) 645
PsuI RGATCY 1 cut(s) 309
RsaI GTAC 2 cut(s) 90, 662
RsaNI GTAC 2 cut(s) 89, 661
SacI GAGCTC 1 cut(s) 46
SaqAI TTAA 6 cut(s) 138, 323, 357, 381, 387, 630
Sau3AI GATC 3 cut(s) 67, 283, 309
Sau96I GGNCC 1 cut(s) 645
ScaI AGTACT 1 cut(s) 662
SchI GAGTC 2 cut(s) 519, 683
SduI GDGCHC 1 cut(s) 46
Sfr274I CTCGAG 1 cut(s) 128
SlaI CTCGAG 1 cut(s) 128
SmlI CTYRAG 2 cut(s) 117, 128
SmoI CTYRAG 2 cut(s) 117, 128
Sse9I AATT 2 cut(s) 459, 627
SsiI CCGC 1 cut(s) 8
SstI GAGCTC 1 cut(s) 46
TaqI TCGA 2 cut(s) 99, 129
TasI AATT 2 cut(s) 459, 627
TatI WGTACW 1 cut(s) 660
Tru1I TTAA 6 cut(s) 138, 323, 357, 381, 387, 630
Tru9I TTAA 6 cut(s) 138, 323, 357, 381, 387, 630
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 4 cut(s) 156, 234, 696, 717
TspGWI ACGGA 1 cut(s) 229
TspRI CASTG 1 cut(s) 157
Van91I CCANNNNNTGG 1 cut(s) 480
XagI CCTNNNNNAGG 1 cut(s) 131
XhoI CTCGAG 1 cut(s) 128
XmnI GAANNNNTTC 1 cut(s) 311
ZrmI AGTACT 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.