Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003408

Physical Location & Seq

Genomic Coordinates Forward (+)

64456757 .. 64460092

Gene Structure 3336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00272310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGTGGCGGACAAGGGAAAGAAGCCCAAGCTTTCAGACAAGCCCGAAGACGAAAACCCTGACCAAATCGACGAGAAGCTCGTCCTCTCCATCGAGAAGTTGCAGGAGGTCCAAGACGAGCTCGAAAAGATCAATGAGGAAGCCAGTGATAAGGTTCTTGAAGTGGAGCAAAAGTACAATGAAATTCGCAAGCCAGTTTACGATAATCGAAATGATATCATCAAGGCCATTCCTGACTTTTGGTTAACTGCGATTTTCAAGCATCTAACTTCTCTGGAAGTGGAGGATTGCAAAGACGTGAAATCTGGTTATACCATTTCACTCTTCTTCAGCCCCAATCCTTACTTTGAAGACACAAAGCTTTCAAAGACCTTTACCTTCCTGGATGAAGGAACAAAAGTTACTGCTACATCAATAAAGTGGAAAGAAGGAATGGGCATACCCAATGGAACTAATCATGAGAAGAAAGGGAACAAACGACCTCCCTCTGAGGAAAGGTTAATTATCCAAATCTGTTGGAGTGTATCTCCAGAATATACTTTATCACTCCTTAGATTTGTTTCATACTGGTTCCAGTTCTTACTTCATTTTTATCTTTTGCATTGTAGCTTCTTTAGCTGGTTTGGTGATAGTCAAGAGAAAGATATTATGGATGAGATTCATGATGAGATTGCAGAGGTCATTAAGGAGGACTTGTGGCCCAATCCTCTTACTTACTTCAGCCATGATGCTGATGATGAGGAATTTGACGAGGACGAAGTTGATGAAGAGGGAAAGGAGGACGATGACGACTCTGAAGATGATGAGGATGATCAAGATGACGATGATGAAGATGGTGATGAGGATGATGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0016444 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

285

Amino Acids

33.3

Weight (kDa)

4.22

Isoelectric Point (pI)

34.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	31 - 76	4.6e-06	Nucleosome assembly protein (NAP)
NAP	PF00956	84 - 241	1.1e-13	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0003408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18800 AT1G74560 AT1G74560
fragaria_vesca	FvH4_5g15130 FvH4_6g48871
malus_domestica	MD06G1191900.v1.1 MD09G1050000.v1.1 MD14G1198400.v1.1 MD17G1050400.v1.1
prunus_persica	Prupe.3G268700_v2.0.a1 Prupe.3G268700_v2.0.a1 Prupe.5G191400_v2.0.a1
pyrus_communis	pycom06g17010 pycom111g04130 pycom14g16490 pycom17g04540
rosa_chinensis	RchiOBHm_Chr2g0168701 RchiOBHm_Chr7g0181051
rosa_laevigata	RLG00000021802
rosa_multiflora	Rmu_sc0002611.1_g000007 Rmu_sc0007079.1_g000003 Rmu_sc0032521.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272310
rosa_rugosa	Rorug02G0534700 Rorug06G0438600 Rorug06G0438700
rosa_samantha	Rh2AG605500 Rh2BG618500 Rh2CG586600 Rh2DG629000 Rh7AG039900 Rh7BG039300 Rh7CG041200 Rh7DG039500
rosa_wichuraiana	Rw2G050190 Rw7G003300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	8
AcsI	RAATTY	2 cut(s)	183, 743
AcuI	CTGAAG	3 cut(s)	313, 703, 816
AfaI	GTAC	1 cut(s)	176
AgsI	TTSAA	4 cut(s)	161, 259, 350, 366
AjiI	CACGTC	1 cut(s)	298
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	6 cut(s)	31, 79, 121, 361, 609, 618
AluI	AGCT	6 cut(s)	31, 79, 121, 361, 609, 618
Alw21I	GWGCWC	1 cut(s)	123
AoxI	GGCC	2 cut(s)	225, 698
ApoI	RAATTY	2 cut(s)	183, 743
AspS9I	GGNCC	2 cut(s)	109, 699
AsuHPI	GGTGA	2 cut(s)	638, 848
AvaII	GGWCC	1 cut(s)	109
BanII	GRGCYC	1 cut(s)	123
BbsI	GAAGAC	2 cut(s)	54, 357
Bbv12I	GWGCWC	1 cut(s)	123
BccI	CCATC	3 cut(s)	98, 827, 842
BciT130I	CCWGG	1 cut(s)	383
BclI	TGATCA	1 cut(s)	811
Bme1390I	CCNGG	1 cut(s)	383
Bme18I	GGWCC	1 cut(s)	109
BmgBI	CACGTC	1 cut(s)	298
BmgT120I	GGNCC	2 cut(s)	109, 699
BmiI	GGNNCC	1 cut(s)	572
BmrFI	CCNGG	1 cut(s)	383
BmsI	GCATC	2 cut(s)	271, 718
BpiI	GAAGAC	2 cut(s)	54, 357
BplI	GAGNNNNNCTC	2 cut(s)	511, 543
BpmI	CTGGAG	1 cut(s)	513
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 188, 680, 710
Bse1I	ACTGG	4 cut(s)	144, 194, 572, 574
BseBI	CCWGG	1 cut(s)	383
BseGI	GGATG	4 cut(s)	391, 658, 814, 850
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	4 cut(s)	144, 194, 572, 574
BshFI	GGCC	2 cut(s)	227, 700
BsiHKAI	GWGCWC	1 cut(s)	123
BsnI	GGCC	2 cut(s)	227, 700
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	129, 811
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	2 cut(s)	227, 700
BspCNI	CTCAG	1 cut(s)	481
BspHI	TCATGA	2 cut(s)	457, 661
BspLI	GGNNCC	1 cut(s)	572
BsrI	ACTGG	4 cut(s)	144, 194, 572, 574
BssMI	GATC	2 cut(s)	129, 811
Bst2UI	CCWGG	1 cut(s)	383
Bst6I	CTCTTC	2 cut(s)	329, 762
BstC8I	GCNNGC	1 cut(s)	191
BstDEI	CTNAG	2 cut(s)	489, 551
BstF5I	GGATG	4 cut(s)	391, 658, 814, 850
BstKTI	GATC	2 cut(s)	132, 814
BstMBI	GATC	2 cut(s)	129, 811
BstMWI	GCNNNNNNNGC	1 cut(s)	615
BstNI	CCWGG	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	381
BstV2I	GAAGAC	2 cut(s)	54, 357
BsuRI	GGCC	2 cut(s)	227, 700
BtrI	CACGTC	1 cut(s)	298
BtsCI	GGATG	4 cut(s)	391, 658, 814, 850
BtsIMutI	CAGTG	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	191
CciI	TCATGA	2 cut(s)	457, 661
Cfr13I	GGNCC	2 cut(s)	109, 699
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	3 cut(s)	458, 662, 725
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	2 cut(s)	489, 551
DpnI	GATC	2 cut(s)	131, 813
DpnII	GATC	2 cut(s)	129, 811
Eam1104I	CTCTTC	2 cut(s)	329, 762
EarI	CTCTTC	2 cut(s)	329, 762
EciI	GGCGGA	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	123
Eco32I	GATATC	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	121
Eco57I	CTGAAG	3 cut(s)	313, 703, 816
EcoICRI	GAGCTC	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	381
EcoRV	GATATC	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	123
FaeI	CATG	3 cut(s)	461, 665, 728
FaiI	YATR	8 cut(s)	312, 440, 459, 537, 565, 650, 663, 726
FalI	AAGNNNNNCTT	2 cut(s)	677, 709
FatI	CATG	3 cut(s)	457, 661, 724
FbaI	TGATCA	1 cut(s)	811
FokI	GGATG	3 cut(s)	398, 665, 821
FriOI	GRGCYC	1 cut(s)	123
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	2 cut(s)	227, 700
Hin1II	CATG	3 cut(s)	461, 665, 728
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HindIII	AAGCTT	2 cut(s)	29, 359
HinfI	GANTC	2 cut(s)	658, 791
HpaI	GTTAAC	1 cut(s)	246
HphI	GGTGA	2 cut(s)	638, 848
Hpy166II	GTNNAC	2 cut(s)	199, 246
Hpy188I	TCNGA	3 cut(s)	37, 490, 796
Hpy188III	TCNNGA	9 cut(s)	94, 158, 233, 275, 458, 530, 635, 662, 815
Hpy8I	GTNNAC	2 cut(s)	199, 246
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	3 cut(s)	383, 388, 422
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	4 cut(s)	103, 291, 601, 674
HpyF10VI	GCNNNNNNNGC	1 cut(s)	615
HpyF3I	CTNAG	2 cut(s)	489, 551
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	3 cut(s)	461, 665, 728
Ksp22I	TGATCA	1 cut(s)	811
KspAI	GTTAAC	1 cut(s)	246
Kzo9I	GATC	2 cut(s)	129, 811
LmnI	GCTCC	1 cut(s)	166
LweI	GCATC	2 cut(s)	271, 718
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	2 cut(s)	131, 813
MboI	GATC	2 cut(s)	129, 811
MboII	GAAGA	8 cut(s)	59, 316, 319, 362, 475, 779, 809, 842
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	3 cut(s)	183, 501, 743
MlyI	GAGTC	1 cut(s)	785
MmeI	TCCRAC	1 cut(s)	497
MseI	TTAA	3 cut(s)	245, 500, 684
MspR9I	CCNGG	1 cut(s)	383
MvaI	CCWGG	1 cut(s)	383
MwoI	GCNNNNNNNGC	1 cut(s)	615
NdeII	GATC	2 cut(s)	129, 811
NlaIII	CATG	3 cut(s)	461, 665, 728
NlaIV	GGNNCC	1 cut(s)	572
PagI	TCATGA	2 cut(s)	457, 661
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	658
PfoI	TCCNGGA	1 cut(s)	381
PleI	GAGTC	1 cut(s)	785
PpsI	GAGTC	1 cut(s)	785
Psp124BI	GAGCTC	1 cut(s)	123
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	572
PspPI	GGNCC	2 cut(s)	109, 699
PsrI	GAACNNNNNNTAC	2 cut(s)	385, 417
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SacI	GAGCTC	1 cut(s)	123
SaqAI	TTAA	3 cut(s)	245, 500, 684
Sau3AI	GATC	2 cut(s)	129, 811
Sau96I	GGNCC	2 cut(s)	109, 699
SchI	GAGTC	1 cut(s)	785
ScrFI	CCNGG	1 cut(s)	383
SduI	GDGCHC	1 cut(s)	123
SfaNI	GCATC	2 cut(s)	271, 718
SinI	GGWCC	1 cut(s)	109
Sse9I	AATT	3 cut(s)	183, 501, 743
SsiI	CCGC	1 cut(s)	8
SstI	GAGCTC	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	381
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	4 cut(s)	69, 93, 123, 208
TasI	AATT	3 cut(s)	183, 501, 743
TatI	WGTACW	1 cut(s)	174
TfiI	GAWTC	1 cut(s)	658
Tru1I	TTAA	3 cut(s)	245, 500, 684
Tru9I	TTAA	3 cut(s)	245, 500, 684
TscAI	CASTG	1 cut(s)	151
TspDTI	ATGAA	7 cut(s)	195, 402, 552, 575, 650, 780, 843
TspRI	CASTG	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	109
XapI	RAATTY	2 cut(s)	183, 743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.