MD09G1050000.v1.1

Belongs to the nucleosome assembly protein (NAP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0003408
Physical Location & Seq
Reverse (-)
3330296 .. 3333793
3498 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1050000.v1.1.491

Sequence Viewer

Length: 747 bp
ATGGTGGCGGACGCGGAGAAGAAGGCCAAGCTCACTGAGCGAGCTCCGGAGGACGACGCCTATCACTTGGACAAGGAGTTCGTGCTTTCCGTTGAGAAGTTGCAGGAGGTTCAGGACGAACTCGACAAGGTTGATGACGAAGAGAGTGACAAGATTTTGGAAATTGAGCAAGAGTGTAACGAGATACGCAGGCCCGTCTATGTGAAACGGAATGAGATAATAAAAACCATTCCTGACTTTTGGCTAACTTCTCTCATGAGCCATCCTGTGCTTTGTGATATTTTGAGTGAAGAAGACCAGAAGATATTCAAGTATTTAAATTCTATTGATGTGGTGGACTTCAAAGATGATAAGATGTTAGGATACTCCGTCACATTCAACTTTAATGGCAATCCTTATTTTCAAGATACAAAGCTGACTAAAACTTTTACATTCATTGATGGTGAGACAACAAAAATTACTGGTACTCCCATCAAATGGAAGGAGGGCACGGGTCTTGCAAATGGAGTTACCGACGAGAAAAATGGAAGGAAACGACCACATGTTGATGAGAGCTTCTTCAGTTTGTTTGACTCAGCTATTGAACATGACGAGATGGTTGAGATAATTAAGAACGATTTATGGCCCAATCCTCTAAAGTATTTTAATAATGAGGCTGATGAAGAGGAGGTCGATGAAGAGGATTCTGAAGACGATGAAATGGAGAATGGTGACGAAGAGGAAGACGATGACGAGGAAGATAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005811 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006337 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009894 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010563 GO:0010605 GO:0010608 GO:0010629 GO:0010639 GO:0010921 GO:0010923 GO:0010941 GO:0012505 GO:0016043 GO:0019208 GO:0019212 GO:0019219 GO:0019220 GO:0019222 GO:0019888 GO:0022411 GO:0022607 GO:0030234 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031329 GO:0031399 GO:0031400 GO:0031497 GO:0031498 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032515 GO:0032984 GO:0032986 GO:0032991 GO:0033043 GO:0033044 GO:0034622 GO:0034641 GO:0034645 GO:0034728 GO:0035065 GO:0035067 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0042393 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0043523 GO:0043524 GO:0043666 GO:0043933 GO:0044085 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0045936 GO:0046483 GO:0048471 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0051336 GO:0051346 GO:0060255 GO:0060548 GO:0061013 GO:0065003 GO:0065004 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0098772 GO:1901214 GO:1901215 GO:1901360 GO:1901576 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903311 GO:1903506 GO:1903507 GO:1905268 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAP

Protein Analysis

249

Amino Acids

28.86

Weight (kDa)

4.19

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 75 - 228 6.8e-24 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 477
AccII CGCG 1 cut(s) 14
AccIII TCCGGA 1 cut(s) 46
AciI CCGC 2 cut(s) 8, 14
AcsI RAATTY 1 cut(s) 319
AcuI CTGAAG 2 cut(s) 544, 708
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 1 cut(s) 466
AfiI CCNNNNNNNGG 1 cut(s) 477
AflIII ACRYGT 1 cut(s) 541
AgsI TTSAA 5 cut(s) 310, 343, 379, 404, 584
AloI GAACNNNNNNTCC 2 cut(s) 62, 94
AluBI AGCT 6 cut(s) 31, 44, 415, 555, 578, 744
AluI AGCT 6 cut(s) 31, 44, 415, 555, 578, 744
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 1 cut(s) 440
Aor13HI TCCGGA 1 cut(s) 46
AoxI GGCC 3 cut(s) 24, 191, 623
ApoI RAATTY 1 cut(s) 319
ArsI GACNNNNNNTTYG 2 cut(s) 62, 94
Asp700I GAANNNNTTC 1 cut(s) 305
AspS9I GGNCC 2 cut(s) 192, 624
AsuHPI GGTGA 2 cut(s) 455, 722
BaeGI GKGCMC 1 cut(s) 491
BanII GRGCYC 1 cut(s) 46
BbsI GAAGAC 3 cut(s) 300, 696, 729
Bbv12I GWGCWC 1 cut(s) 46
BccI CCATC 4 cut(s) 270, 434, 479, 589
BciVI GTATCC 1 cut(s) 356
BcoDI GTCTC 1 cut(s) 440
BfaI CTAG 1 cut(s) 745
BfuI GTATCC 1 cut(s) 356
BmgT120I GGNCC 2 cut(s) 192, 624
BpiI GAAGAC 3 cut(s) 300, 696, 729
BsaHI GRCGYC 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 46
BsaXI ACNNNNNCTCC 2 cut(s) 451, 481
Bsc4I CCNNNNNNNGG 1 cut(s) 477
Bse1I ACTGG 1 cut(s) 466
BseAI TCCGGA 1 cut(s) 46
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 477
BseMII CTCAG 2 cut(s) 27, 588
BseNI ACTGG 1 cut(s) 466
BseRI GAGGAG 1 cut(s) 680
BseSI GKGCMC 1 cut(s) 491
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 3 cut(s) 26, 193, 625
BsiHKAI GWGCWC 1 cut(s) 46
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 477
BsmAI GTCTC 1 cut(s) 440
BsnI GGCC 3 cut(s) 26, 193, 625
Bsp1286I GDGCHC 2 cut(s) 46, 491
Bsp13I TCCGGA 1 cut(s) 46
BspACI CCGC 2 cut(s) 8, 14
BspANI GGCC 3 cut(s) 26, 193, 625
BspCNI CTCAG 2 cut(s) 28, 587
BspEI TCCGGA 1 cut(s) 46
BspFNI CGCG 1 cut(s) 14
BspHI TCATGA 1 cut(s) 255
BsrI ACTGG 1 cut(s) 466
BssNI GRCGYC 1 cut(s) 57
Bst6I CTCTTC 4 cut(s) 135, 657, 672, 711
BstACI GRCGYC 1 cut(s) 57
BstC8I GCNNGC 2 cut(s) 42, 191
BstDEI CTNAG 2 cut(s) 36, 574
BstF5I GGATG 1 cut(s) 262
BstFNI CGCG 1 cut(s) 14
BstMAI GTCTC 1 cut(s) 440
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNSI RCATGY 1 cut(s) 545
BstSLI GKGCMC 1 cut(s) 491
BstUI CGCG 1 cut(s) 14
BstV2I GAAGAC 3 cut(s) 300, 696, 729
BsuI GTATCC 1 cut(s) 356
BsuRI GGCC 3 cut(s) 26, 193, 625
BtsCI GGATG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 2 cut(s) 42, 191
CciI TCATGA 1 cut(s) 255
Cfr13I GGNCC 2 cut(s) 192, 624
CseI GACGC 2 cut(s) 20, 65
Csp6I GTAC 1 cut(s) 465
CviAII CATG 3 cut(s) 256, 542, 587
CviQI GTAC 1 cut(s) 465
DdeI CTNAG 2 cut(s) 36, 574
DraI TTTAAA 1 cut(s) 318
Eam1104I CTCTTC 4 cut(s) 135, 657, 672, 711
EarI CTCTTC 4 cut(s) 135, 657, 672, 711
EciI GGCGGA 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 46
Eco53kI GAGCTC 1 cut(s) 44
Eco57I CTGAAG 2 cut(s) 544, 708
EcoICRI GAGCTC 1 cut(s) 44
EcoT38I GRGCYC 1 cut(s) 46
FaeI CATG 3 cut(s) 259, 545, 590
FaiI YATR 5 cut(s) 201, 257, 543, 588, 622
FatI CATG 3 cut(s) 255, 541, 586
FokI GGATG 1 cut(s) 249
FriOI GRGCYC 1 cut(s) 46
FspBI CTAG 1 cut(s) 745
HaeIII GGCC 3 cut(s) 26, 193, 625
HapII CCGG 1 cut(s) 47
HgaI GACGC 2 cut(s) 20, 65
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 3 cut(s) 259, 545, 590
HinfI GANTC 2 cut(s) 572, 683
HpaII CCGG 1 cut(s) 47
HphI GGTGA 2 cut(s) 455, 722
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 1 cut(s) 688
Hpy188III TCNNGA 5 cut(s) 47, 113, 233, 256, 404
Hpy8I GTNNAC 1 cut(s) 337
Hpy99I CGWCG 2 cut(s) 59, 518
HpyAV CCTTC 3 cut(s) 16, 475, 522
HpyCH4V TGCA 2 cut(s) 103, 500
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 2 cut(s) 36, 574
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 3 cut(s) 259, 545, 590
Kpn2I TCCGGA 1 cut(s) 46
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 8 cut(s) 60, 89, 98, 175, 246, 279, 311, 447
MaeI CTAG 1 cut(s) 745
MaeIII GTNAC 5 cut(s) 146, 176, 370, 508, 710
MhlI GDGCHC 2 cut(s) 46, 491
MluCI AATT 4 cut(s) 162, 319, 456, 606
MlyI GAGTC 1 cut(s) 566
MroI TCCGGA 1 cut(s) 46
MroXI GAANNNNTTC 1 cut(s) 305
MseI TTAA 4 cut(s) 317, 384, 609, 645
MslI CAYNNNNRTG 1 cut(s) 546
MspI CCGG 1 cut(s) 47
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 37
NlaIII CATG 3 cut(s) 259, 545, 590
NmuCI GTSAC 3 cut(s) 146, 370, 710
NspI RCATGY 1 cut(s) 545
PagI TCATGA 1 cut(s) 255
PciI ACATGT 1 cut(s) 541
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PdmI GAANNNNTTC 1 cut(s) 305
PfeI GAWTC 1 cut(s) 683
PflMI CCANNNNNTGG 1 cut(s) 477
PleI GAGTC 1 cut(s) 566
PpsI GAGTC 1 cut(s) 566
PscI ACATGT 1 cut(s) 541
Psp124BI GAGCTC 1 cut(s) 46
PspPI GGNCC 2 cut(s) 192, 624
RsaI GTAC 1 cut(s) 466
RsaNI GTAC 1 cut(s) 465
RseI CAYNNNNRTG 1 cut(s) 546
SacI GAGCTC 1 cut(s) 46
SaqAI TTAA 4 cut(s) 317, 384, 609, 645
Sau96I GGNCC 2 cut(s) 192, 624
SchI GAGTC 1 cut(s) 566
SduI GDGCHC 2 cut(s) 46, 491
SetI ASST 9 cut(s) 33, 46, 111, 132, 417, 557, 580, 672, 746
SmiI ATTTAAAT 1 cut(s) 318
SmiMI CAYNNNNRTG 1 cut(s) 546
Sse9I AATT 4 cut(s) 162, 319, 456, 606
SsiI CCGC 2 cut(s) 8, 14
SspMI CTAG 1 cut(s) 745
SstI GAGCTC 1 cut(s) 46
SwaI ATTTAAAT 1 cut(s) 318
TaqI TCGA 2 cut(s) 123, 672
TasI AATT 4 cut(s) 162, 319, 456, 606
TfiI GAWTC 1 cut(s) 683
Tru1I TTAA 4 cut(s) 317, 384, 609, 645
Tru9I TTAA 4 cut(s) 317, 384, 609, 645
TscAI CASTG 1 cut(s) 40
TseFI GTSAC 3 cut(s) 146, 370, 710
Tsp45I GTSAC 3 cut(s) 146, 370, 710
TspDTI ATGAA 4 cut(s) 424, 675, 690, 711
TspGWI ACGGA 3 cut(s) 79, 223, 358
TspRI CASTG 1 cut(s) 40
Van91I CCANNNNNTGG 1 cut(s) 477
XapI RAATTY 1 cut(s) 319
XceI RCATGY 1 cut(s) 545
XmnI GAANNNNTTC 1 cut(s) 305
XspI CTAG 1 cut(s) 745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.