MD17G1050400.v1.1

Belongs to the nucleosome assembly protein (NAP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0003408
Physical Location & Seq
Reverse (-)
3734328 .. 3738004
3677 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1050400.v1.1.491

Sequence Viewer

Length: 774 bp
ATGGTGGCGGACGCGGCGAAGCAGCCCAAGCTCACCGAGCGAGCTCCGGAGGACGACGCCGATCACCTTGACAAGGAGCTCGTGCTCTCCGTCGAGAAGTTGCAGGAGGTTCAAGACGAACTCGACAAGGTTGATGACGAAGAGAATGACAAGGTTTTGGACATTGAGCAAAAGTATAACGAGATACGCAGGCCCGTCTATGTGAAGCGGAATGAGATAATAAAAACCATTCCTGACTTTTGGCTAACTTCTTTCATGAGCCATCCTGTACTTTGTGATATTTTGAGTGCAGAAGACCAGAAGATTTTCAAGTATTTAAAGTCTATTGATGTGGTGGACTTCAAAGATGATAAGACGTTAGGATACTCCGTCACATTCAACTTTAATGACAACCCTTATTTTGAAGATACAAAGCTGACAAAAACTTTTACATATATTGATGGTCAGACAACAAAAATTACTGGTACTCCCGTCAAATGGAAGGAGGGCATGGGTCTTGCAAATGGAGTTACTGACGTGAAAAATGGAAAGAAACGACCACATGTTGATGAGAGCTTCTTCAGTTTGTTTAACGAAACTGAACATAAAGATATAGATGCAATTCATGATGAGGTGGTAGAGATAATTAAGAACGACTTATGGCCCAATCCTCTAAAGTATTTTAATAATGAGGCTGATGAGGAGGAGGTCGATGAAGAGGATTCTGAAGATGATGAAATGGAGAATGGTGACGAAGAAGATGATGAAGACGACGATGACGAGGAAGATAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005811 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006337 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009894 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010563 GO:0010605 GO:0010608 GO:0010629 GO:0010639 GO:0010921 GO:0010923 GO:0010941 GO:0012505 GO:0016043 GO:0019208 GO:0019212 GO:0019219 GO:0019220 GO:0019222 GO:0019888 GO:0022411 GO:0022607 GO:0030234 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031329 GO:0031399 GO:0031400 GO:0031497 GO:0031498 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032515 GO:0032984 GO:0032986 GO:0032991 GO:0033043 GO:0033044 GO:0034622 GO:0034641 GO:0034645 GO:0034728 GO:0035065 GO:0035067 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0042393 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0043523 GO:0043524 GO:0043666 GO:0043933 GO:0044085 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0045936 GO:0046483 GO:0048471 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0051336 GO:0051346 GO:0060255 GO:0060548 GO:0061013 GO:0065003 GO:0065004 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0098772 GO:1901214 GO:1901215 GO:1901360 GO:1901576 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903311 GO:1903506 GO:1903507 GO:1905268 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAP

Protein Analysis

258

Amino Acids

29.86

Weight (kDa)

4.2

Isoelectric Point (pI)

37.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 75 - 223 3e-27 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 14
AccIII TCCGGA 1 cut(s) 46
AciI CCGC 3 cut(s) 8, 14, 208
AcuI CTGAAG 2 cut(s) 544, 726
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 2 cut(s) 270, 466
AfiI CCNNNNNNNGG 2 cut(s) 73, 477
AflIII ACRYGT 1 cut(s) 541
AgsI TTSAA 5 cut(s) 113, 310, 343, 379, 404
AjiI CACGTC 1 cut(s) 517
AluBI AGCT 6 cut(s) 31, 44, 79, 415, 555, 771
AluI AGCT 6 cut(s) 31, 44, 79, 415, 555, 771
Alw21I GWGCWC 3 cut(s) 46, 81, 87
Aor13HI TCCGGA 1 cut(s) 46
AoxI GGCC 2 cut(s) 191, 641
ApeKI GCWGC 1 cut(s) 22
Asp700I GAANNNNTTC 1 cut(s) 305
AspS9I GGNCC 2 cut(s) 192, 642
AsuHPI GGTGA 3 cut(s) 25, 56, 740
BaeI ACNNNNGTAYC 2 cut(s) 456, 489
BanII GRGCYC 2 cut(s) 46, 81
BauI CACGAG 1 cut(s) 80
BbsI GAAGAC 2 cut(s) 300, 753
Bbv12I GWGCWC 3 cut(s) 46, 81, 87
BbvI GCAGC 1 cut(s) 34
BccI CCATC 2 cut(s) 270, 434
BciVI GTATCC 1 cut(s) 356
BfaI CTAG 1 cut(s) 772
BfuI GTATCC 1 cut(s) 356
BisI GCNGC 2 cut(s) 15, 23
BlsI GCNGC 2 cut(s) 16, 24
BmgBI CACGTC 1 cut(s) 517
BmgT120I GGNCC 2 cut(s) 192, 642
BmsI GCATC 1 cut(s) 586
BpiI GAAGAC 2 cut(s) 300, 753
BsaHI GRCGYC 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 46
BsaXI ACNNNNNCTCC 2 cut(s) 451, 481
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 477
Bse1I ACTGG 1 cut(s) 466
BseAI TCCGGA 1 cut(s) 46
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 2 cut(s) 73, 477
BseNI ACTGG 1 cut(s) 466
BseRI GAGGAG 2 cut(s) 695, 698
BseXI GCAGC 1 cut(s) 34
BsgI GTGCAG 1 cut(s) 309
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 2 cut(s) 193, 643
BsiHKAI GWGCWC 3 cut(s) 46, 81, 87
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 2 cut(s) 73, 477
BsnI GGCC 2 cut(s) 193, 643
Bsp1286I GDGCHC 3 cut(s) 46, 81, 87
Bsp13I TCCGGA 1 cut(s) 46
Bsp143I GATC 1 cut(s) 61
BspACI CCGC 3 cut(s) 8, 14, 208
BspANI GGCC 2 cut(s) 193, 643
BspEI TCCGGA 1 cut(s) 46
BspFNI CGCG 1 cut(s) 14
BspHI TCATGA 2 cut(s) 255, 604
BsrI ACTGG 1 cut(s) 466
BssMI GATC 1 cut(s) 61
BssNI GRCGYC 1 cut(s) 57
BssSI CACGAG 1 cut(s) 80
Bst2BI CACGAG 1 cut(s) 80
Bst6I CTCTTC 2 cut(s) 135, 690
BstACI GRCGYC 1 cut(s) 57
BstC8I GCNNGC 2 cut(s) 42, 191
BstENI CCTNNNNNAGG 1 cut(s) 71
BstF5I GGATG 1 cut(s) 262
BstFNI CGCG 1 cut(s) 14
BstKTI GATC 1 cut(s) 64
BstMBI GATC 1 cut(s) 61
BstMWI GCNNNNNNNGC 3 cut(s) 14, 28, 37
BstNSI RCATGY 1 cut(s) 545
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 34
BstV2I GAAGAC 2 cut(s) 300, 753
BsuI GTATCC 1 cut(s) 356
BsuRI GGCC 2 cut(s) 193, 643
BtrI CACGTC 1 cut(s) 517
BtsCI GGATG 1 cut(s) 262
Cac8I GCNNGC 2 cut(s) 42, 191
CciI TCATGA 2 cut(s) 255, 604
Cfr13I GGNCC 2 cut(s) 192, 642
CseI GACGC 2 cut(s) 20, 65
Csp6I GTAC 2 cut(s) 269, 465
CviAII CATG 4 cut(s) 256, 490, 542, 605
CviQI GTAC 2 cut(s) 269, 465
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
DraI TTTAAA 1 cut(s) 318
Eam1104I CTCTTC 2 cut(s) 135, 690
EarI CTCTTC 2 cut(s) 135, 690
EciI GGCGGA 1 cut(s) 23
Ecl136II GAGCTC 2 cut(s) 44, 79
Eco24I GRGCYC 2 cut(s) 46, 81
Eco53kI GAGCTC 2 cut(s) 44, 79
Eco57I CTGAAG 2 cut(s) 544, 726
EcoICRI GAGCTC 2 cut(s) 44, 79
EcoNI CCTNNNNNAGG 1 cut(s) 71
EcoT38I GRGCYC 2 cut(s) 46, 81
FaeI CATG 4 cut(s) 259, 493, 545, 608
FalI AAGNNNNNCTT 2 cut(s) 620, 652
FatI CATG 4 cut(s) 255, 489, 541, 604
Fnu4HI GCNGC 2 cut(s) 15, 23
FokI GGATG 1 cut(s) 249
FriOI GRGCYC 2 cut(s) 46, 81
Fsp4HI GCNGC 2 cut(s) 15, 23
FspBI CTAG 1 cut(s) 772
GluI GCNGC 2 cut(s) 15, 23
HaeIII GGCC 2 cut(s) 193, 643
HapII CCGG 1 cut(s) 47
HgaI GACGC 2 cut(s) 20, 65
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 4 cut(s) 259, 493, 545, 608
HinfI GANTC 1 cut(s) 701
HpaII CCGG 1 cut(s) 47
HphI GGTGA 3 cut(s) 25, 56, 740
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 2 cut(s) 447, 706
Hpy188III TCNNGA 6 cut(s) 47, 94, 113, 233, 256, 605
Hpy8I GTNNAC 1 cut(s) 337
Hpy99I CGWCG 3 cut(s) 59, 95, 755
HpyAV CCTTC 1 cut(s) 475
HpyCH4IV ACGT 2 cut(s) 356, 516
HpyCH4V TGCA 4 cut(s) 103, 290, 500, 599
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 28, 37
HpySE526I ACGT 2 cut(s) 356, 516
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 4 cut(s) 259, 493, 545, 608
Kpn2I TCCGGA 1 cut(s) 46
Kzo9I GATC 1 cut(s) 61
LmnI GCTCC 2 cut(s) 49, 76
LpnPI CCDG 7 cut(s) 60, 89, 175, 246, 279, 311, 447
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 1 cut(s) 586
MaeI CTAG 1 cut(s) 772
MaeII ACGT 2 cut(s) 356, 516
MaeIII GTNAC 3 cut(s) 370, 508, 728
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MhlI GDGCHC 3 cut(s) 46, 81, 87
MluCI AATT 3 cut(s) 456, 600, 624
MroI TCCGGA 1 cut(s) 46
MroXI GAANNNNTTC 1 cut(s) 305
MseI TTAA 5 cut(s) 317, 384, 570, 627, 663
MslI CAYNNNNRTG 1 cut(s) 546
MspI CCGG 1 cut(s) 47
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 3 cut(s) 14, 28, 37
NdeII GATC 1 cut(s) 61
NlaIII CATG 4 cut(s) 259, 493, 545, 608
NmuCI GTSAC 2 cut(s) 370, 728
NspI RCATGY 1 cut(s) 545
PagI TCATGA 2 cut(s) 255, 604
PciI ACATGT 1 cut(s) 541
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 756
PdmI GAANNNNTTC 1 cut(s) 305
PfeI GAWTC 1 cut(s) 701
PkrI GCNGC 2 cut(s) 16, 24
PscI ACATGT 1 cut(s) 541
Psp124BI GAGCTC 2 cut(s) 46, 81
PspPI GGNCC 2 cut(s) 192, 642
RsaI GTAC 2 cut(s) 270, 466
RsaNI GTAC 2 cut(s) 269, 465
RseI CAYNNNNRTG 1 cut(s) 546
SacI GAGCTC 2 cut(s) 46, 81
SaqAI TTAA 5 cut(s) 317, 384, 570, 627, 663
SatI GCNGC 2 cut(s) 15, 23
Sau3AI GATC 1 cut(s) 61
Sau96I GGNCC 2 cut(s) 192, 642
SduI GDGCHC 3 cut(s) 46, 81, 87
SfaNI GCATC 1 cut(s) 586
SmiMI CAYNNNNRTG 1 cut(s) 546
Sse9I AATT 3 cut(s) 456, 600, 624
SsiI CCGC 3 cut(s) 8, 14, 208
SspMI CTAG 1 cut(s) 772
SstI GAGCTC 2 cut(s) 46, 81
TaiI ACGT 2 cut(s) 359, 519
TaqI TCGA 3 cut(s) 93, 123, 690
TasI AATT 3 cut(s) 456, 600, 624
TatI WGTACW 1 cut(s) 268
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 1 cut(s) 701
Tru1I TTAA 5 cut(s) 317, 384, 570, 627, 663
Tru9I TTAA 5 cut(s) 317, 384, 570, 627, 663
TseFI GTSAC 2 cut(s) 370, 728
TseI GCWGC 1 cut(s) 22
Tsp45I GTSAC 2 cut(s) 370, 728
TspDTI ATGAA 5 cut(s) 244, 593, 708, 729, 759
TspGWI ACGGA 2 cut(s) 79, 358
XagI CCTNNNNNAGG 1 cut(s) 71
XceI RCATGY 1 cut(s) 545
XmnI GAANNNNTTC 1 cut(s) 305
XspI CTAG 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.