Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006107

Physical Location & Seq

Genomic Coordinates Forward (+)

54279029 .. 54280322

Gene Structure 1294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1442500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGAAGAAGTTGGAGGATGAATTGACTTCTTGGAAGTTGATCATTGAAGACATTCCAGGCGTGTCATGTTCTGAGGATTTACCAGTTAAATTCGCATCATTACAAAAGTATGTGAATAGCTCATTTCAGTCCTTTGAACCAGCATTGTTAGATCATTTAGACGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000075 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005819 GO:0005856 GO:0006996 GO:0007049 GO:0007059 GO:0007080 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0008608 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015630 GO:0016043 GO:0022402 GO:0030071 GO:0031577 GO:0031967 GO:0031975 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0048285 GO:0048519 GO:0048523 GO:0050000 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0071840 GO:0072686 GO:0098687 GO:0098813 GO:0140014 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko04110 ko04914 ko05203 map04110 map04914 map05203

Pfam Domains

Protein Families

DUF4094 Galactosyl_T MAD

Protein Analysis

56

Amino Acids

6.29

Weight (kDa)

4.46

Isoelectric Point (pI)

65.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49880
fragaria_vesca	FvH4_5g27851 FvH4_5g27851 FvH4_5g27851 FvH4_5g27851 FvH4_5g27851 FvH4_5g27851 FvH4_5g27851
malus_domestica	MD08G1248100.v1.1 MD15G1442500.v1.1 MD15G1442900.v1.1
prunus_persica	Prupe.1G585300_v2.0.a1 Prupe.1G585300_v2.0.a1
pyrus_communis	pycom08g21490 pycom15g39070
rosa_chinensis	RchiOBHm_Chr7g0219751
rosa_laevigata	RLG00000002272
rosa_multiflora	Rmu_co8270887.1_g000001 Rmu_sc0007335.1_g000005
rosa_roxburghii	Rroxscaffold_3G00239880
rosa_rugosa	Rorug07G0187600 Rorug07G0187700
rosa_samantha	Rh7AG331300 Rh7BG321100 Rh7CG348700 Rh7DG326800
rosa_wichuraiana	Rw7G027890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	89
AgsI	TTSAA	2 cut(s)	47, 137
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	1 cut(s)	120
AluI	AGCT	1 cut(s)	120
ApoI	RAATTY	1 cut(s)	89
Asp700I	GAANNNNTTC	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	54
BciT130I	CCWGG	1 cut(s)	57
BclI	TGATCA	1 cut(s)	39
Bme1390I	CCNGG	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	104
BpiI	GAAGAC	1 cut(s)	54
Bse1I	ACTGG	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	57
BseGI	GGATG	1 cut(s)	22
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	39, 151
BspCNI	CTCAG	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	83
BssMI	GATC	2 cut(s)	39, 151
Bst2UI	CCWGG	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	22
BstKTI	GATC	2 cut(s)	42, 154
BstMBI	GATC	2 cut(s)	39, 151
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstV2I	GAAGAC	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	22
CviAII	CATG	1 cut(s)	66
CviJI	RGCY	1 cut(s)	120
CviKI_1	RGCY	1 cut(s)	120
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	2 cut(s)	41, 153
DpnII	GATC	2 cut(s)	39, 151
EcoRII	CCWGG	1 cut(s)	55
FaeI	CATG	1 cut(s)	69
FaiI	YATR	2 cut(s)	67, 111
FatI	CATG	1 cut(s)	65
FbaI	TGATCA	1 cut(s)	39
FokI	GGATG	1 cut(s)	29
FspEI	CC	7 cut(s)	16, 42, 59, 69, 96, 145, 153
Hin1II	CATG	1 cut(s)	69
Hpy188I	TCNGA	1 cut(s)	73
HpyF3I	CTNAG	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	69
Ksp22I	TGATCA	1 cut(s)	39
Kzo9I	GATC	2 cut(s)	39, 151
LpnPI	CCDG	4 cut(s)	42, 69, 96, 153
LweI	GCATC	1 cut(s)	104
MalI	GATC	2 cut(s)	41, 153
MboI	GATC	2 cut(s)	39, 151
MboII	GAAGA	2 cut(s)	16, 59
MluCI	AATT	2 cut(s)	20, 89
MnlI	CCTC	2 cut(s)	7, 67
MroXI	GAANNNNTTC	1 cut(s)	51
MseI	TTAA	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
NdeII	GATC	2 cut(s)	39, 151
NlaIII	CATG	1 cut(s)	69
PdmI	GAANNNNTTC	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	87
Sau3AI	GATC	2 cut(s)	39, 151
ScrFI	CCNGG	1 cut(s)	57
SetI	ASST	1 cut(s)	122
SfaNI	GCATC	1 cut(s)	104
SgeI	CNNG	7 cut(s)	42, 68, 69, 73, 78, 95, 152
Sse9I	AATT	2 cut(s)	20, 89
StyD4I	CCNGG	1 cut(s)	55
TasI	AATT	2 cut(s)	20, 89
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TspDTI	ATGAA	2 cut(s)	17, 33
XapI	RAATTY	1 cut(s)	89
XmnI	GAANNNNTTC	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.