Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006107

Physical Location & Seq

Genomic Coordinates Forward (+)

30974800 .. 30987660

Gene Structure 12861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00239880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGATAGTGAGGACTCCTCCAGTGAAGAAGCGACGGGGGCCGGAAATCGAGAGCCCACCACCGTCTGCGGCGGCCGGCCCTCTCGTCATCTACGAGGACCACCCTTCTCTTTCCCCGCTTCTTCAACCTACCGACGACGGTTCCTCCCACCACATGCTCTGCACCTATCAATGCCGCCAAATGGTTAAATCAGAGTTTCTAGATGCCTTAAGTAATGCAGAGAAGCAAGTTCAGGATTATCAATCTAGATTGGAGGCATTAAATGACAACTTTCGCAAAGTTGAATCAGAGAGGAAGAAATTTCGGGATCAATTTTTATATACAGAACAAGAACTTTCCGCGGCAAAGGGACGCGAAAAGGCTCTGCAGGAGCAACAGTTGAAGGAGGTCCATGATTTTCAGGAAAGATTCAGTAAACAAATACGATCATACACTGAGCTTGAGGTAAAGCTCCAAACTGAAATAAATCTTCGCATGAAAGCTGAGACTTCAGCCGCTTCAGCTGAGAAGAAAGCAAGTGTTTTAGAGGGAAAGCTAAGCCATCTTTCTGAAAGCATAGAGAGGGAGAAAAGGCATCTCAACAATGAAATTGCACATATTAAAAGAGAATCCAAGCTTTCTGTTGCTAGAATAACTGCTGATTGCTTGCAACAGAAGAGTGAAGCAGAGACTAAGTTAACCAGATTGACATTCCAAGAAGTTAATCATACAGACAATGATATATTGGTTAAACATCTGCAAGAAGAGCTTAGAAACTTTGAAGCTGAAGTGAGGGCAGCGAGAAAGCTGAAGTCTTCTCATGAAGATGTGAATTTGTTGAAGGAAAAATTGCTGGAAGAAAAGGGCCGTAGAGAGAGGGCAGAGTCAGAGTTATCCAAATTACAAGAATTTCACCCAAGCATGAAGAAGTTGGAGGATGAGTTGACATCTTGGAAGTTGATGACCAAAGACATTCCAGGCGTGTCATGTTGTGATGATATACCTGTGAAGTTTGGAGCTTTACAAAAAGAGGTAATTGATAGCACGAAGAGGGAGGGTGAGGCAACTGCCCGCTTGAAACAATTGGAGGTAGCTCTGGATGCTGCACTAATTGGTAAACAAAATGTTGAAACTGAGGCTGAACTGATGAGAGAGAAGTTGGAGGTAACAAAATCAGAGGTTAACAGGATTGAACTGATGCTTTCTAGAGTTACTGAGGAAAGAGACAAGTTGAGAAATGACATCAATGAATTCAAGCGGGCAAAGAGTGATGGTGCAGGAGATGAAAGCAACCAGTCAAACTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000075 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005819 GO:0005856 GO:0006996 GO:0007049 GO:0007059 GO:0007080 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0008608 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015630 GO:0016043 GO:0022402 GO:0030071 GO:0031577 GO:0031967 GO:0031975 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0048285 GO:0048519 GO:0048523 GO:0050000 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0071840 GO:0072686 GO:0098687 GO:0098813 GO:0140014 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko04110 ko04914 ko05203 map04110 map04914 map05203

Pfam Domains

Protein Families

DUF4094 Galactosyl_T MAD

Protein Analysis

429

Amino Acids

49.21

Weight (kDa)

6.11

Isoelectric Point (pI)

54.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49880
fragaria_vesca	FvH4_5g27851 FvH4_5g27851 FvH4_5g27851 FvH4_5g27851 FvH4_5g27851 FvH4_5g27851 FvH4_5g27851
malus_domestica	MD08G1248100.v1.1 MD15G1442500.v1.1 MD15G1442900.v1.1
prunus_persica	Prupe.1G585300_v2.0.a1 Prupe.1G585300_v2.0.a1
pyrus_communis	pycom08g21490 pycom15g39070
rosa_chinensis	RchiOBHm_Chr7g0219751
rosa_laevigata	RLG00000002272
rosa_multiflora	Rmu_co8270887.1_g000001 Rmu_sc0007335.1_g000005
rosa_roxburghii	Rroxscaffold_3G00239880
rosa_rugosa	Rorug07G0187600 Rorug07G0187700
rosa_samantha	Rh7AG331300 Rh7BG321100 Rh7CG348700 Rh7DG326800
rosa_wichuraiana	Rw7G027890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	341, 354
AciI	CCGC	9 cut(s)	68, 71, 116, 175, 339, 341, 495, 1051, 1237
AclWI	GGATC	1 cut(s)	315
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	4 cut(s)	299, 811, 887, 1229
AcuI	CTGAAG	4 cut(s)	474, 483, 786, 809
AfiI	CCNNNNNNNGG	1 cut(s)	181
AflII	CTTAAG	1 cut(s)	208
AgsI	TTSAA	9 cut(s)	125, 284, 382, 761, 820, 1057, 1109, 1172, 1234
AjnI	CCWGG	1 cut(s)	955
Alw26I	GTCTC	3 cut(s)	479, 662, 1197
AlwI	GGATC	1 cut(s)	315
AoxI	GGCC	4 cut(s)	38, 72, 76, 844
ApeKI	GCWGC	2 cut(s)	776, 1082
ApoI	RAATTY	4 cut(s)	299, 811, 887, 1229
AspS9I	GGNCC	5 cut(s)	38, 77, 97, 388, 844
AsuHPI	GGTGA	2 cut(s)	884, 1049
AvaII	GGWCC	2 cut(s)	97, 388
BanII	GRGCYC	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	786
BbvI	GCAGC	2 cut(s)	788, 1069
BccI	CCATC	2 cut(s)	549, 1244
BceAI	ACGGC	1 cut(s)	831
BciT130I	CCWGG	1 cut(s)	957
BcoDI	GTCTC	3 cut(s)	479, 662, 1197
BfaI	CTAG	4 cut(s)	200, 246, 627, 1185
BfmI	CTRYAG	1 cut(s)	365
BfrI	CTTAAG	1 cut(s)	208
BisI	GCNGC	7 cut(s)	69, 72, 175, 342, 495, 777, 1083
BlpI	GCTNAGC	1 cut(s)	536
BlsI	GCNGC	7 cut(s)	70, 73, 176, 343, 496, 778, 1084
Bme1390I	CCNGG	1 cut(s)	957
Bme18I	GGWCC	2 cut(s)	97, 388
BmgT120I	GGNCC	5 cut(s)	38, 77, 97, 388, 844
BmiI	GGNNCC	2 cut(s)	39, 142
BmrFI	CCNGG	1 cut(s)	957
BmsI	GCATC	4 cut(s)	193, 583, 1069, 1167
BpiI	GAAGAC	1 cut(s)	786
BplI	GAGNNNNNCTC	1 cut(s)	33
Bpu1102I	GCTNAGC	1 cut(s)	536
BpuEI	CTTGAG	1 cut(s)	461
BsaJI	CCNNGG	1 cut(s)	339
BsaXI	ACNNNNNCTCC	6 cut(s)	128, 158, 362, 392, 905, 935
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	2 cut(s)	20, 1273
BseBI	CCWGG	1 cut(s)	957
BseDI	CCNNGG	1 cut(s)	339
BseGI	GGATG	2 cut(s)	922, 1084
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	5 cut(s)	426, 474, 495, 1104, 1185
BseNI	ACTGG	2 cut(s)	20, 1273
BseRI	GAGGAG	1 cut(s)	6
BseX3I	CGGCCG	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	788, 1069
BsgI	GTGCAG	3 cut(s)	145, 1068, 1275
Bsh1236I	CGCG	2 cut(s)	341, 354
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	4 cut(s)	40, 74, 78, 846
BsiEI	CGRYCG	1 cut(s)	75
BsiSI	CCGG	2 cut(s)	41, 75
BslFI	GGGAC	1 cut(s)	363
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	3 cut(s)	479, 662, 1197
BsmFI	GGGAC	1 cut(s)	363
BsnI	GGCC	4 cut(s)	40, 74, 78, 846
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	2 cut(s)	307, 425
Bsp1720I	GCTNAGC	1 cut(s)	536
BspACI	CCGC	9 cut(s)	68, 71, 116, 175, 339, 341, 495, 1051, 1237
BspANI	GGCC	4 cut(s)	40, 74, 78, 846
BspCNI	CTCAG	5 cut(s)	427, 475, 496, 1105, 1186
BspFNI	CGCG	2 cut(s)	341, 354
BspHI	TCATGA	1 cut(s)	799
BspLI	GGNNCC	2 cut(s)	39, 142
BspMAI	CTGCAG	1 cut(s)	369
BspPI	GGATC	1 cut(s)	315
BspQI	GCTCTTC	1 cut(s)	738
BspTI	CTTAAG	1 cut(s)	208
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	2 cut(s)	20, 1273
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	339
BssMI	GATC	2 cut(s)	307, 425
Bst2UI	CCWGG	1 cut(s)	957
Bst4CI	ACNGT	3 cut(s)	63, 140, 378
Bst6I	CTCTTC	3 cut(s)	650, 738, 1022
BstAFI	CTTAAG	1 cut(s)	208
BstC8I	GCNNGC	4 cut(s)	76, 647, 1051, 1239
BstDEI	CTNAG	8 cut(s)	435, 483, 504, 536, 672, 749, 1113, 1194
BstDSI	CCRYGG	1 cut(s)	339
BstF5I	GGATG	2 cut(s)	922, 1084
BstFNI	CGCG	2 cut(s)	341, 354
BstKTI	GATC	2 cut(s)	310, 428
BstMAI	GTCTC	3 cut(s)	479, 662, 1197
BstMBI	GATC	2 cut(s)	307, 425
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	4 cut(s)	37, 500, 745, 1079
BstNI	CCWGG	1 cut(s)	957
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	955
BstSFI	CTRYAG	1 cut(s)	365
BstUI	CGCG	2 cut(s)	341, 354
BstV1I	GCAGC	2 cut(s)	788, 1069
BstV2I	GAAGAC	1 cut(s)	786
BstZI	CGGCCG	1 cut(s)	72
BsuRI	GGCC	4 cut(s)	40, 74, 78, 846
BtgI	CCRYGG	1 cut(s)	339
BtsCI	GGATG	2 cut(s)	922, 1084
BtsIMutI	CAGTG	2 cut(s)	27, 432
Cac8I	GCNNGC	4 cut(s)	76, 647, 1051, 1239
CciI	TCATGA	1 cut(s)	799
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	5 cut(s)	38, 77, 97, 388, 844
Cfr42I	CCGCGG	1 cut(s)	342
CseI	GACGC	1 cut(s)	360
CviAII	CATG	6 cut(s)	154, 392, 475, 800, 901, 966
DdeI	CTNAG	8 cut(s)	435, 483, 504, 536, 672, 749, 1113, 1194
DpnI	GATC	2 cut(s)	309, 427
DpnII	GATC	2 cut(s)	307, 425
EaeI	YGGCCR	1 cut(s)	72
EagI	CGGCCG	1 cut(s)	72
Eam1104I	CTCTTC	3 cut(s)	650, 738, 1022
EarI	CTCTTC	3 cut(s)	650, 738, 1022
EclXI	CGGCCG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	56
Eco47I	GGWCC	2 cut(s)	97, 388
Eco52I	CGGCCG	1 cut(s)	72
Eco57I	CTGAAG	4 cut(s)	474, 483, 786, 809
EcoRI	GAATTC	1 cut(s)	1229
EcoRII	CCWGG	1 cut(s)	955
EcoT38I	GRGCYC	1 cut(s)	56
FaeI	CATG	6 cut(s)	157, 395, 478, 803, 904, 969
FalI	AAGNNNNNCTT	2 cut(s)	732, 764
FaqI	GGGAC	1 cut(s)	363
FatI	CATG	6 cut(s)	153, 391, 474, 799, 900, 965
FauI	CCCGC	3 cut(s)	123, 1058, 1230
Fnu4HI	GCNGC	7 cut(s)	69, 72, 175, 342, 495, 777, 1083
FokI	GGATG	2 cut(s)	929, 1091
FriOI	GRGCYC	1 cut(s)	56
FseI	GGCCGGCC	1 cut(s)	78
Fsp4HI	GCNGC	7 cut(s)	69, 72, 175, 342, 495, 777, 1083
FspBI	CTAG	4 cut(s)	200, 246, 627, 1185
GluI	GCNGC	7 cut(s)	69, 72, 175, 342, 495, 777, 1083
HaeIII	GGCC	4 cut(s)	40, 74, 78, 846
HapII	CCGG	2 cut(s)	41, 75
HgaI	GACGC	1 cut(s)	360
Hin1II	CATG	6 cut(s)	157, 395, 478, 803, 904, 969
HincII	GTYRAC	3 cut(s)	678, 924, 1162
HindII	GTYRAC	3 cut(s)	678, 924, 1162
HindIII	AAGCTT	1 cut(s)	614
HinfI	GANTC	5 cut(s)	13, 284, 408, 608, 863
HpaI	GTTAAC	2 cut(s)	678, 1162
HpaII	CCGG	2 cut(s)	41, 75
HphI	GGTGA	2 cut(s)	884, 1049
Hpy166II	GTNNAC	5 cut(s)	416, 678, 924, 1097, 1162
Hpy188I	TCNGA	5 cut(s)	193, 289, 550, 868, 1156
Hpy188III	TCNNGA	9 cut(s)	49, 200, 233, 246, 305, 401, 800, 1076, 1185
Hpy8I	GTNNAC	5 cut(s)	416, 678, 924, 1097, 1162
Hpy99I	CGWCG	3 cut(s)	36, 137, 140
HpyAV	CCTTC	3 cut(s)	114, 376, 814
HpyCH4III	ACNGT	3 cut(s)	63, 140, 378
HpyCH4V	TGCA	8 cut(s)	162, 218, 367, 593, 649, 739, 1085, 1256
HpyF10VI	GCNNNNNNNGC	4 cut(s)	37, 500, 745, 1079
HpyF3I	CTNAG	8 cut(s)	435, 483, 504, 536, 672, 749, 1113, 1194
Hsp92II	CATG	6 cut(s)	157, 395, 478, 803, 904, 969
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
KspAI	GTTAAC	2 cut(s)	678, 1162
KspI	CCGCGG	1 cut(s)	342
Kzo9I	GATC	2 cut(s)	307, 425
LguI	GCTCTTC	1 cut(s)	738
LmnI	GCTCC	3 cut(s)	370, 456, 995
Lsp1109I	GCAGC	2 cut(s)	788, 1069
LweI	GCATC	4 cut(s)	193, 583, 1069, 1167
MaeI	CTAG	4 cut(s)	200, 246, 627, 1185
MaeIII	GTNAC	2 cut(s)	1144, 1189
MalI	GATC	2 cut(s)	309, 427
MboI	GATC	2 cut(s)	307, 425
MfeI	CAATTG	1 cut(s)	1061
MhlI	GDGCHC	1 cut(s)	56
MlyI	GAGTC	2 cut(s)	7, 872
MmeI	TCCRAC	2 cut(s)	891, 1119
MroNI	GCCGGC	1 cut(s)	74
MseI	TTAA	9 cut(s)	186, 209, 260, 600, 677, 702, 729, 1161, 1288
MslI	CAYNNNNRTG	1 cut(s)	804
MspA1I	CMGCKG	2 cut(s)	341, 503
MspCI	CTTAAG	1 cut(s)	208
MspI	CCGG	2 cut(s)	41, 75
MspR9I	CCNGG	1 cut(s)	957
MunI	CAATTG	1 cut(s)	1061
MvaI	CCWGG	1 cut(s)	957
MvnI	CGCG	2 cut(s)	341, 354
MwoI	GCNNNNNNNGC	4 cut(s)	37, 500, 745, 1079
NaeI	GCCGGC	1 cut(s)	76
NdeII	GATC	2 cut(s)	307, 425
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	6 cut(s)	157, 395, 478, 803, 904, 969
NlaIV	GGNNCC	2 cut(s)	39, 142
NspI	RCATGY	1 cut(s)	157
PagI	TCATGA	1 cut(s)	799
PciSI	GCTCTTC	1 cut(s)	738
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PdiI	GCCGGC	1 cut(s)	76
PfeI	GAWTC	3 cut(s)	284, 408, 608
PkrI	GCNGC	7 cut(s)	70, 73, 176, 343, 496, 778, 1084
PleI	GAGTC	2 cut(s)	7, 871
PpsI	GAGTC	2 cut(s)	7, 871
Psp6I	CCWGG	1 cut(s)	955
PspGI	CCWGG	1 cut(s)	955
PspN4I	GGNNCC	2 cut(s)	39, 142
PspPI	GGNCC	5 cut(s)	38, 77, 97, 388, 844
PstI	CTGCAG	1 cut(s)	369
PvuII	CAGCTG	1 cut(s)	503
RigI	GGCCGGCC	1 cut(s)	78
RseI	CAYNNNNRTG	1 cut(s)	804
SacII	CCGCGG	1 cut(s)	342
SapI	GCTCTTC	1 cut(s)	738
SaqAI	TTAA	9 cut(s)	186, 209, 260, 600, 677, 702, 729, 1161, 1288
SatI	GCNGC	7 cut(s)	69, 72, 175, 342, 495, 777, 1083
Sau3AI	GATC	2 cut(s)	307, 425
Sau96I	GGNCC	5 cut(s)	38, 77, 97, 388, 844
SchI	GAGTC	2 cut(s)	7, 872
ScrFI	CCNGG	1 cut(s)	957
SduI	GDGCHC	1 cut(s)	56
SfaNI	GCATC	4 cut(s)	193, 583, 1069, 1167
SfcI	CTRYAG	1 cut(s)	365
Sfr303I	CCGCGG	1 cut(s)	342
SgrBI	CCGCGG	1 cut(s)	342
SinI	GGWCC	2 cut(s)	97, 388
SmiMI	CAYNNNNRTG	1 cut(s)	804
SmlI	CTYRAG	2 cut(s)	208, 440
SmoI	CTYRAG	2 cut(s)	208, 440
SsiI	CCGC	9 cut(s)	68, 71, 116, 175, 339, 341, 495, 1051, 1237
SspMI	CTAG	4 cut(s)	200, 246, 627, 1185
StyD4I	CCNGG	1 cut(s)	955
TaaI	ACNGT	3 cut(s)	63, 140, 378
TaqI	TCGA	1 cut(s)	48
TauI	GCSGC	5 cut(s)	71, 74, 177, 344, 497
TfiI	GAWTC	3 cut(s)	284, 408, 608
Tru1I	TTAA	9 cut(s)	186, 209, 260, 600, 677, 702, 729, 1161, 1288
Tru9I	TTAA	9 cut(s)	186, 209, 260, 600, 677, 702, 729, 1161, 1288
TscAI	CASTG	2 cut(s)	27, 439
TseI	GCWGC	2 cut(s)	776, 1082
TspDTI	ATGAA	6 cut(s)	491, 600, 816, 917, 1242, 1278
TspRI	CASTG	2 cut(s)	27, 439
Vha464I	CTTAAG	1 cut(s)	208
VpaK11BI	GGWCC	2 cut(s)	97, 388
XapI	RAATTY	4 cut(s)	299, 811, 887, 1229
XbaI	TCTAGA	3 cut(s)	199, 245, 1184
XceI	RCATGY	1 cut(s)	157
XspI	CTAG	4 cut(s)	200, 246, 627, 1185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.