Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0006107

Physical Location & Seq

Genomic Coordinates Reverse (-)

36822672 .. 36832592

Gene Structure 9921 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G027890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGGAATGTAGAGCTCATAATGCTGAGAAAGAATCACAACTACTGAAAGGGCAGCTGGATGATCTTAAAAAGCAACTTAGTGAGTGCTTGCAACAGAAGAGTGAAGCAGAGACTAAGTTAACCAGATTCACATTCCAAGAAGTTAATCATACAGACAATGATATATTGGTTAAACATCTGCAAGAAGAGCTTAGAAACTTTGAAGCTGAAGTGAGGGCAGCGAGAAAGCTGAAGTCTTCTCATGAAGATGTGAATTTGTTGAAGGAAAAATTGCTGGAAGAAAAGGGCCGTAGAGAGAGGGCAGAGTCAGAGTTATCCAAATTACAAGAATTTCACCCGAGCATGAAGAAGTTGGAGGATGAGTTGACATCTTGGAAGTTGATGACCAAAGACATTCCAGGCGTGTCATGTTGTGATGATATACCTGTGAAGTTTGGAGCTTTGCAAAAAGAGGTAATTGATAGCACGAAGAGGGAGGGTGAGGCAACTGCCCGCTTGAAACAATTGGAGGTAGCTCTGGATGCTGCACTAATTGGTAAACAAAATGCTGAAACTGAGGCTGAACTGATGAGAGAGAAGTTGGAGGTAACAAAATCAGAGGTTAACAGGATTGAACTGATGCTTTCTAGAGTTACTGAGGAAAGAGATAAGTTGAGAAATGACATCAATGAATTCAAGCGGGCAAAGAGTGATGGTGCAGGAGATGAAGCAACCAGTCAAAGTCTTCTTAAGGAGCTTGAATCGTCTCTTGCAAAGAAGGAAGGCTATATTAAAGAACTAGATTCTGCTCTATTTGAACAAAAACAAGTTAATAGTTGTCAACGTGAAGAAATAAAGTCACTCAATGATAGATTAAAAACTGAAGCGAGAAAAGTGAAGTCATTGGAGAGGGAGGGTGATCAACTTCGTTCAGAGATCTCTCTGCTGGAGTCCAAGCTGGGCCACGGTGATTTCTCTGCTGCAAATACAAAAGTTTTACGAATGGTGAATACTCTTACTGTTGATAATGAAGCAAAACAAACTATAGAGGCATTAAGAACTGAACTACAGAAGACAAAGGAGAAGTTACAAGCCGTTGAAGTATTGAAAAGCCAGTCAGGTGAAGCTGGGAAATTGGTGGATTCAGACATATCCGGAAAGATTGTGCAGTTGAAAGAACAAATCGCAACTCTTGAAAAACGTGAGGAAAGGTACAAGACTGTTTTTGCTGACAGAATTTCAGTGTTCAGGAGAGCATGTTGTGAGCTTTTTGGTTACAAGATTGTAATGGATGAACACCAGCGACCGAATGGTATCCCTGTTACACGTTTTACCCTCCAATCTATATATGCTCAAAGCGATAATGAGAAGCTTGAATTTGAATACGAATCAGGGACTACAAACATTTTGGCAAATGATTATACCTCTCAGCGTGAGATATCTCAACAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000075 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005819 GO:0005856 GO:0006996 GO:0007049 GO:0007059 GO:0007080 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0008608 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015630 GO:0016043 GO:0022402 GO:0030071 GO:0031577 GO:0031967 GO:0031975 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0048285 GO:0048519 GO:0048523 GO:0050000 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0071840 GO:0072686 GO:0098687 GO:0098813 GO:0140014 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko04110 ko04914 ko05203 map04110 map04914 map05203

Pfam Domains

Protein Families

DUF4094 Galactosyl_T MAD

Protein Analysis

477

Amino Acids

54.6

Weight (kDa)

5.59

Isoelectric Point (pI)

45.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MAD	PF05557	17 - 468	8.2e-22	Mitotic checkpoint protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49880
fragaria_vesca	FvH4_5g27851 FvH4_5g27851 FvH4_5g27851 FvH4_5g27851 FvH4_5g27851 FvH4_5g27851 FvH4_5g27851
malus_domestica	MD08G1248100.v1.1 MD15G1442500.v1.1 MD15G1442900.v1.1
prunus_persica	Prupe.1G585300_v2.0.a1 Prupe.1G585300_v2.0.a1
pyrus_communis	pycom08g21490 pycom15g39070
rosa_chinensis	RchiOBHm_Chr7g0219751
rosa_laevigata	RLG00000002272
rosa_multiflora	Rmu_co8270887.1_g000001 Rmu_sc0007335.1_g000005
rosa_roxburghii	Rroxscaffold_3G00239880
rosa_rugosa	Rorug07G0187600 Rorug07G0187700
rosa_samantha	Rh7AG331300 Rh7BG321100 Rh7CG348700 Rh7DG326800
rosa_wichuraiana	Rw7G027890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	1133
AciI	CCGC	2 cut(s)	493, 679
AcsI	RAATTY	5 cut(s)	253, 329, 671, 1215, 1355
AcuI	CTGAAG	3 cut(s)	228, 251, 882
AfaI	GTAC	1 cut(s)	1193
AflII	CTTAAG	1 cut(s)	728
AflIII	ACRYGT	1 cut(s)	1304
AjnI	CCWGG	1 cut(s)	397
Alw21I	GWGCWC	1 cut(s)	16
Alw26I	GTCTC	2 cut(s)	104, 750
Ama87I	CYCGRG	1 cut(s)	337
Aor13HI	TCCGGA	1 cut(s)	1133
AoxI	GGCC	2 cut(s)	286, 940
ApeKI	GCWGC	4 cut(s)	52, 218, 524, 959
ApoI	RAATTY	5 cut(s)	253, 329, 671, 1215, 1355
AspS9I	GGNCC	2 cut(s)	286, 940
AsuHPI	GGTGA	6 cut(s)	326, 491, 908, 959, 997, 1112
AvaI	CYCGRG	1 cut(s)	337
BanII	GRGCYC	1 cut(s)	16
BbsI	GAAGAC	3 cut(s)	228, 716, 1058
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	4 cut(s)	64, 230, 511, 946
BccI	CCATC	1 cut(s)	686
BceAI	ACGGC	2 cut(s)	273, 1058
BciT130I	CCWGG	1 cut(s)	399
BciVI	GTATCC	1 cut(s)	1304
BclI	TGATCA	1 cut(s)	898
BcoDI	GTCTC	2 cut(s)	104, 750
BfaI	CTAG	2 cut(s)	627, 779
BfmI	CTRYAG	2 cut(s)	1023, 1046
BfrI	CTTAAG	1 cut(s)	728
BfuI	GTATCC	1 cut(s)	1304
BglII	AGATCT	1 cut(s)	915
BisI	GCNGC	4 cut(s)	53, 219, 525, 960
BlsI	GCNGC	4 cut(s)	54, 220, 526, 961
Bme1390I	CCNGG	1 cut(s)	399
BmeT110I	CYCGRG	1 cut(s)	337
BmgT120I	GGNCC	2 cut(s)	286, 940
BmrFI	CCNGG	1 cut(s)	399
BmsI	GCATC	2 cut(s)	511, 609
BpiI	GAAGAC	3 cut(s)	228, 716, 1058
BpmI	CTGGAG	1 cut(s)	947
BsaJI	CCNNGG	1 cut(s)	943
BsaWI	WCCGGW	1 cut(s)	1133
BsaXI	ACNNNNNCTCC	4 cut(s)	347, 377, 1222, 1252
Bse1I	ACTGG	2 cut(s)	714, 1093
BseAI	TCCGGA	1 cut(s)	1133
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	943
BseGI	GGATG	4 cut(s)	64, 364, 526, 1276
BseMII	CTCAG	4 cut(s)	15, 546, 627, 1421
BseNI	ACTGG	2 cut(s)	714, 1093
BseXI	GCAGC	4 cut(s)	64, 230, 511, 946
BseYI	CCCAGC	2 cut(s)	937, 1106
BsgI	GTGCAG	3 cut(s)	510, 717, 1166
Bsh1285I	CGRYCG	1 cut(s)	1286
BshFI	GGCC	2 cut(s)	288, 942
BsiEI	CGRYCG	1 cut(s)	1286
BsiHKAI	GWGCWC	1 cut(s)	16
BsiHKCI	CYCGRG	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	1134
BslFI	GGGAC	1 cut(s)	1387
BsmAI	GTCTC	2 cut(s)	104, 750
BsmBI	CGTCTC	1 cut(s)	750
BsmFI	GGGAC	1 cut(s)	1387
BsnI	GGCC	2 cut(s)	288, 942
BsoBI	CYCGRG	1 cut(s)	337
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp13I	TCCGGA	1 cut(s)	1133
Bsp143I	GATC	3 cut(s)	61, 898, 915
BspACI	CCGC	2 cut(s)	493, 679
BspANI	GGCC	2 cut(s)	288, 942
BspCNI	CTCAG	4 cut(s)	16, 547, 628, 1420
BspEI	TCCGGA	1 cut(s)	1133
BspHI	TCATGA	1 cut(s)	241
BspQI	GCTCTTC	1 cut(s)	180
BspTI	CTTAAG	1 cut(s)	728
BsrI	ACTGG	2 cut(s)	714, 1093
BssECI	CCNNGG	1 cut(s)	943
BssMI	GATC	3 cut(s)	61, 898, 915
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	3 cut(s)	947, 1000, 1201
Bst6I	CTCTTC	3 cut(s)	92, 180, 464
BstAFI	CTTAAG	1 cut(s)	728
BstC8I	GCNNGC	3 cut(s)	89, 493, 681
BstDEI	CTNAG	7 cut(s)	24, 77, 114, 191, 555, 636, 1407
BstDSI	CCRYGG	1 cut(s)	943
BstF5I	GGATG	4 cut(s)	64, 364, 526, 1276
BstKTI	GATC	3 cut(s)	64, 901, 918
BstMAI	GTCTC	2 cut(s)	104, 750
BstMBI	GATC	3 cut(s)	61, 898, 915
BstMCI	CGRYCG	1 cut(s)	1286
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 187, 521
BstNI	CCWGG	1 cut(s)	399
BstNSI	RCATGY	1 cut(s)	1239
BstSCI	CCNGG	1 cut(s)	397
BstSFI	CTRYAG	2 cut(s)	1023, 1046
BstV1I	GCAGC	4 cut(s)	64, 230, 511, 946
BstV2I	GAAGAC	3 cut(s)	228, 716, 1058
BstX2I	RGATCY	1 cut(s)	915
BstYI	RGATCY	1 cut(s)	915
BsuI	GTATCC	1 cut(s)	1304
BsuRI	GGCC	2 cut(s)	288, 942
BtgI	CCRYGG	1 cut(s)	943
BtsCI	GGATG	4 cut(s)	64, 364, 526, 1276
BtsIMutI	CAGTG	1 cut(s)	1227
Cac8I	GCNNGC	3 cut(s)	89, 493, 681
CciI	TCATGA	1 cut(s)	241
Cfr13I	GGNCC	2 cut(s)	286, 940
Csp6I	GTAC	1 cut(s)	1192
CviAII	CATG	4 cut(s)	242, 343, 408, 1236
CviQI	GTAC	1 cut(s)	1192
DdeI	CTNAG	7 cut(s)	24, 77, 114, 191, 555, 636, 1407
DpnI	GATC	3 cut(s)	63, 900, 917
DpnII	GATC	3 cut(s)	61, 898, 915
Eam1104I	CTCTTC	3 cut(s)	92, 180, 464
EarI	CTCTTC	3 cut(s)	92, 180, 464
Ecl136II	GAGCTC	1 cut(s)	14
Eco24I	GRGCYC	1 cut(s)	16
Eco32I	GATATC	1 cut(s)	1419
Eco53kI	GAGCTC	1 cut(s)	14
Eco57I	CTGAAG	3 cut(s)	228, 251, 882
Eco88I	CYCGRG	1 cut(s)	337
EcoICRI	GAGCTC	1 cut(s)	14
EcoRI	GAATTC	1 cut(s)	671
EcoRII	CCWGG	1 cut(s)	397
EcoRV	GATATC	1 cut(s)	1419
EcoT38I	GRGCYC	1 cut(s)	16
Esp3I	CGTCTC	1 cut(s)	750
FaeI	CATG	4 cut(s)	245, 346, 411, 1239
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FaqI	GGGAC	1 cut(s)	1387
FatI	CATG	4 cut(s)	241, 342, 407, 1235
FauI	CCCGC	2 cut(s)	500, 672
FbaI	TGATCA	1 cut(s)	898
Fnu4HI	GCNGC	4 cut(s)	53, 219, 525, 960
FokI	GGATG	4 cut(s)	71, 371, 533, 1283
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	4 cut(s)	53, 219, 525, 960
FspBI	CTAG	2 cut(s)	627, 779
GluI	GCNGC	4 cut(s)	53, 219, 525, 960
GsaI	CCCAGC	2 cut(s)	941, 1110
GsuI	CTGGAG	1 cut(s)	947
HaeIII	GGCC	2 cut(s)	288, 942
HapII	CCGG	1 cut(s)	1134
Hin1II	CATG	4 cut(s)	245, 346, 411, 1239
HincII	GTYRAC	4 cut(s)	120, 366, 604, 821
HindII	GTYRAC	4 cut(s)	120, 366, 604, 821
HindIII	AAGCTT	1 cut(s)	1349
HinfI	GANTC	8 cut(s)	32, 126, 305, 740, 782, 929, 1121, 1367
HpaI	GTTAAC	2 cut(s)	120, 604
HpaII	CCGG	1 cut(s)	1134
HphI	GGTGA	6 cut(s)	326, 491, 908, 959, 997, 1112
Hpy166II	GTNNAC	5 cut(s)	120, 366, 539, 604, 821
Hpy188I	TCNGA	4 cut(s)	310, 598, 913, 1126
Hpy188III	TCNNGA	6 cut(s)	242, 518, 627, 1134, 1172, 1228
Hpy8I	GTNNAC	5 cut(s)	120, 366, 539, 604, 821
HpyAV	CCTTC	3 cut(s)	256, 751, 755
HpyCH4III	ACNGT	3 cut(s)	947, 1000, 1201
HpyCH4IV	ACGT	3 cut(s)	823, 1180, 1306
HpyCH4V	TGCA	8 cut(s)	91, 181, 445, 527, 698, 752, 962, 1147
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 187, 521
HpyF3I	CTNAG	7 cut(s)	24, 77, 114, 191, 555, 636, 1407
HpySE526I	ACGT	3 cut(s)	823, 1180, 1306
Hsp92II	CATG	4 cut(s)	245, 346, 411, 1239
Kpn2I	TCCGGA	1 cut(s)	1133
Ksp22I	TGATCA	1 cut(s)	898
KspAI	GTTAAC	2 cut(s)	120, 604
Kzo9I	GATC	3 cut(s)	61, 898, 915
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	2 cut(s)	437, 733
Lsp1109I	GCAGC	4 cut(s)	64, 230, 511, 946
LweI	GCATC	2 cut(s)	511, 609
MaeI	CTAG	2 cut(s)	627, 779
MaeII	ACGT	3 cut(s)	823, 1180, 1306
MaeIII	GTNAC	6 cut(s)	586, 631, 837, 1065, 1253, 1300
MalI	GATC	3 cut(s)	63, 900, 917
MboI	GATC	3 cut(s)	61, 898, 915
MfeI	CAATTG	1 cut(s)	503
MflI	RGATCY	1 cut(s)	915
MhlI	GDGCHC	1 cut(s)	16
MlyI	GAGTC	2 cut(s)	314, 938
MmeI	TCCRAC	2 cut(s)	333, 561
MroI	TCCGGA	1 cut(s)	1133
MslI	CAYNNNNRTG	1 cut(s)	246
MspA1I	CMGCKG	1 cut(s)	55
MspCI	CTTAAG	1 cut(s)	728
MspI	CCGG	1 cut(s)	1134
MspR9I	CCNGG	1 cut(s)	399
MunI	CAATTG	1 cut(s)	503
MvaI	CCWGG	1 cut(s)	399
MwoI	GCNNNNNNNGC	3 cut(s)	20, 187, 521
NdeII	GATC	3 cut(s)	61, 898, 915
NlaIII	CATG	4 cut(s)	245, 346, 411, 1239
NmuCI	GTSAC	1 cut(s)	837
NspI	RCATGY	1 cut(s)	1239
PagI	TCATGA	1 cut(s)	241
PciSI	GCTCTTC	1 cut(s)	180
PfeI	GAWTC	6 cut(s)	32, 126, 740, 782, 1121, 1367
PkrI	GCNGC	4 cut(s)	54, 220, 526, 961
PleI	GAGTC	2 cut(s)	313, 937
PpsI	GAGTC	2 cut(s)	313, 937
Psp124BI	GAGCTC	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	397
PspFI	CCCAGC	2 cut(s)	937, 1106
PspGI	CCWGG	1 cut(s)	397
PspPI	GGNCC	2 cut(s)	286, 940
PsuI	RGATCY	1 cut(s)	915
PvuII	CAGCTG	1 cut(s)	55
RsaI	GTAC	1 cut(s)	1193
RsaNI	GTAC	1 cut(s)	1192
RseI	CAYNNNNRTG	1 cut(s)	246
SacI	GAGCTC	1 cut(s)	16
SapI	GCTCTTC	1 cut(s)	180
SatI	GCNGC	4 cut(s)	53, 219, 525, 960
Sau3AI	GATC	3 cut(s)	61, 898, 915
Sau96I	GGNCC	2 cut(s)	286, 940
SchI	GAGTC	2 cut(s)	314, 938
ScrFI	CCNGG	1 cut(s)	399
SduI	GDGCHC	1 cut(s)	16
SfaNI	GCATC	2 cut(s)	511, 609
SfcI	CTRYAG	2 cut(s)	1023, 1046
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	728
SmoI	CTYRAG	1 cut(s)	728
SsiI	CCGC	2 cut(s)	493, 679
SspMI	CTAG	2 cut(s)	627, 779
SstI	GAGCTC	1 cut(s)	16
StyD4I	CCNGG	1 cut(s)	397
TaaI	ACNGT	3 cut(s)	947, 1000, 1201
TaiI	ACGT	3 cut(s)	826, 1183, 1309
TaqII	GACCGA	1 cut(s)	1300
TfiI	GAWTC	6 cut(s)	32, 126, 740, 782, 1121, 1367
TscAI	CASTG	1 cut(s)	1227
TseFI	GTSAC	1 cut(s)	837
TseI	GCWGC	4 cut(s)	52, 218, 524, 959
Tsp45I	GTSAC	1 cut(s)	837
TspDTI	ATGAA	6 cut(s)	258, 359, 684, 720, 1023, 1287
TspRI	CASTG	1 cut(s)	1227
Vha464I	CTTAAG	1 cut(s)	728
XapI	RAATTY	5 cut(s)	253, 329, 671, 1215, 1355
XbaI	TCTAGA	1 cut(s)	626
XceI	RCATGY	1 cut(s)	1239
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1286
XspI	CTAG	2 cut(s)	627, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.