Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006107

Physical Location & Seq

Genomic Coordinates Forward (+)

15864795 .. 15865496

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0187600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGGTGTCTTCACTTATGAATCTGAGTTCACCTCTGTCATCCCGCCAACCAGGTTGTTCAAGGCCTTCGTTCTCGATGCAGACAACCTCATCCCCAAGATTGCTCCCCAGGCAGTTAAGAGTACCGAGATTCTTCAAGGAGATGGAGGTGTTGGAACCATCAAGAAGATCAACCTTGGGGAAGGAAGTGAATACAGCTACGTGAAGCATCAGATTGACGGAATTGACAAGGACAACTTTGTGTACAAGTACAGCATGATTGAAGGAGATGCTATCTCAGACAAAATTGAGAAGATCTCGTATGAGACTAAGTTGGTAGCATCTTCCGACGGAGGCTCCGTCATTAAGAGCACCAGCAACTACCACACCAAGGGTGACGTCGAGATCAAGGAAGAGCATGTTAAGGCTGGCAAAGAAAGGGCTGCTGGTTTGTTCAAGATTATTGAGAGCCACCTTCTGGCCAACCCTGATGCTTACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000075 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005819 GO:0005856 GO:0006996 GO:0007049 GO:0007059 GO:0007080 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0008608 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015630 GO:0016043 GO:0022402 GO:0030071 GO:0031577 GO:0031967 GO:0031975 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0048285 GO:0048519 GO:0048523 GO:0050000 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0071840 GO:0072686 GO:0098687 GO:0098813 GO:0140014 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko04110 ko04914 ko05203 map04110 map04914 map05203

Pfam Domains

Protein Families

DUF4094 Galactosyl_T MAD

Protein Analysis

160

Amino Acids

17.54

Weight (kDa)

5.39

Isoelectric Point (pI)

22.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	1 - 155	3.6e-26	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49880
fragaria_vesca	FvH4_5g27851 FvH4_5g27851 FvH4_5g27851 FvH4_5g27851 FvH4_5g27851 FvH4_5g27851 FvH4_5g27851
malus_domestica	MD08G1248100.v1.1 MD15G1442500.v1.1 MD15G1442900.v1.1
prunus_persica	Prupe.1G585300_v2.0.a1 Prupe.1G585300_v2.0.a1
pyrus_communis	pycom08g21490 pycom15g39070
rosa_chinensis	RchiOBHm_Chr7g0219751
rosa_laevigata	RLG00000002272
rosa_multiflora	Rmu_co8270887.1_g000001 Rmu_sc0007335.1_g000005
rosa_roxburghii	Rroxscaffold_3G00239880
rosa_rugosa	Rorug07G0187600 Rorug07G0187700
rosa_samantha	Rh7AG331300 Rh7BG321100 Rh7CG348700 Rh7DG326800
rosa_wichuraiana	Rw7G027890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	381
AccB7I	CCANNNNNTGG	1 cut(s)	457
AciI	CCGC	1 cut(s)	44
AcoI	YGGCCR	1 cut(s)	459
AcyI	GRCGYC	1 cut(s)	378
AfaI	GTAC	3 cut(s)	124, 245, 251
AfiI	CCNNNNNNNGG	2 cut(s)	370, 457
AgsI	TTSAA	4 cut(s)	61, 137, 263, 436
AjnI	CCWGG	2 cut(s)	50, 108
AluBI	AGCT	1 cut(s)	198
AluI	AGCT	1 cut(s)	198
Alw21I	GWGCWC	1 cut(s)	353
Alw26I	GTCTC	1 cut(s)	299
AoxI	GGCC	2 cut(s)	63, 459
ApeKI	GCWGC	1 cut(s)	422
AsuHPI	GGTGA	2 cut(s)	22, 386
BalI	TGGCCA	1 cut(s)	461
Bbv12I	GWGCWC	1 cut(s)	353
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	2 cut(s)	137, 167
BciT130I	CCWGG	2 cut(s)	52, 110
BcoDI	GTCTC	1 cut(s)	299
BglII	AGATCT	1 cut(s)	294
BisI	GCNGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	424
Bme1390I	CCNGG	2 cut(s)	52, 110
BmiI	GGNNCC	2 cut(s)	157, 337
BmrFI	CCNGG	2 cut(s)	52, 110
BmsI	GCATC	5 cut(s)	67, 217, 259, 329, 460
BplI	GAGNNNNNCTC	4 cut(s)	17, 49, 281, 313
BsaAI	YACGTR	1 cut(s)	202
BsaHI	GRCGYC	1 cut(s)	378
BsaJI	CCNNGG	3 cut(s)	108, 175, 369
BsaXI	ACNNNNNCTCC	4 cut(s)	320, 324, 350, 354
Bsc4I	CCNNNNNNNGG	2 cut(s)	370, 457
BseBI	CCWGG	2 cut(s)	52, 110
BseDI	CCNNGG	3 cut(s)	108, 175, 369
BseGI	GGATG	2 cut(s)	39, 90
BseLI	CCNNNNNNNGG	2 cut(s)	370, 457
BseMII	CTCAG	2 cut(s)	15, 291
BseXI	GCAGC	1 cut(s)	409
BshFI	GGCC	2 cut(s)	65, 461
BsiHKAI	GWGCWC	1 cut(s)	353
BslI	CCNNNNNNNGG	2 cut(s)	370, 457
BsmAI	GTCTC	1 cut(s)	299
BsnI	GGCC	2 cut(s)	65, 461
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp1407I	TGTACA	1 cut(s)	243
Bsp143I	GATC	3 cut(s)	168, 294, 384
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	2 cut(s)	65, 461
BspCNI	CTCAG	2 cut(s)	16, 290
BspLI	GGNNCC	2 cut(s)	157, 337
BspQI	GCTCTTC	1 cut(s)	387
BsrGI	TGTACA	1 cut(s)	243
BssECI	CCNNGG	3 cut(s)	108, 175, 369
BssMI	GATC	3 cut(s)	168, 294, 384
BssNI	GRCGYC	1 cut(s)	378
BssT1I	CCWWGG	2 cut(s)	175, 369
Bst2UI	CCWGG	2 cut(s)	52, 110
Bst6I	CTCTTC	1 cut(s)	387
BstACI	GRCGYC	1 cut(s)	378
BstAUI	TGTACA	1 cut(s)	243
BstBAI	YACGTR	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	3 cut(s)	24, 277, 309
BstF5I	GGATG	2 cut(s)	39, 90
BstKTI	GATC	3 cut(s)	171, 297, 387
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	3 cut(s)	168, 294, 384
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNI	CCWGG	2 cut(s)	52, 110
BstNSI	RCATGY	1 cut(s)	401
BstSCI	CCNGG	2 cut(s)	50, 108
BstV1I	GCAGC	1 cut(s)	409
BstX2I	RGATCY	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	294
BsuRI	GGCC	2 cut(s)	65, 461
BtsCI	GGATG	2 cut(s)	39, 90
Cac8I	GCNNGC	1 cut(s)	409
CsiI	ACCWGGT	1 cut(s)	50
Csp6I	GTAC	3 cut(s)	123, 244, 250
CviAII	CATG	2 cut(s)	256, 398
CviJI	RGCY	7 cut(s)	65, 198, 336, 407, 422, 450, 461
CviKI_1	RGCY	7 cut(s)	65, 198, 336, 407, 422, 450, 461
CviQI	GTAC	3 cut(s)	123, 244, 250
DdeI	CTNAG	3 cut(s)	24, 277, 309
DpnI	GATC	3 cut(s)	170, 296, 386
DpnII	GATC	3 cut(s)	168, 294, 384
EaeI	YGGCCR	1 cut(s)	459
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco130I	CCWWGG	2 cut(s)	175, 369
Eco147I	AGGCCT	1 cut(s)	65
EcoRII	CCWGG	2 cut(s)	50, 108
EcoT14I	CCWWGG	2 cut(s)	175, 369
ErhI	CCWWGG	2 cut(s)	175, 369
FaeI	CATG	2 cut(s)	259, 401
FaiI	YATR	4 cut(s)	18, 257, 303, 399
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FatI	CATG	2 cut(s)	255, 397
FauI	CCCGC	1 cut(s)	51
Fnu4HI	GCNGC	1 cut(s)	423
FokI	GGATG	2 cut(s)	26, 77
Fsp4HI	GCNGC	1 cut(s)	423
GluI	GCNGC	1 cut(s)	423
HaeIII	GGCC	2 cut(s)	65, 461
Hin1I	GRCGYC	1 cut(s)	378
Hin1II	CATG	2 cut(s)	259, 401
HinfI	GANTC	2 cut(s)	20, 130
HphI	GGTGA	2 cut(s)	22, 386
Hpy166II	GTNNAC	2 cut(s)	30, 244
Hpy188I	TCNGA	4 cut(s)	25, 213, 280, 328
Hpy188III	TCNNGA	4 cut(s)	74, 163, 382, 436
Hpy8I	GTNNAC	2 cut(s)	30, 244
Hpy99I	CGWCG	2 cut(s)	332, 383
HpyAV	CCTTC	4 cut(s)	76, 176, 257, 464
HpyCH4IV	ACGT	2 cut(s)	201, 378
HpyCH4V	TGCA	1 cut(s)	80
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	3 cut(s)	24, 277, 309
HpySE526I	ACGT	2 cut(s)	201, 378
Hsp92I	GRCGYC	1 cut(s)	378
Hsp92II	CATG	2 cut(s)	259, 401
Kzo9I	GATC	3 cut(s)	168, 294, 384
LguI	GCTCTTC	1 cut(s)	387
LmnI	GCTCC	2 cut(s)	109, 341
LpnPI	CCDG	8 cut(s)	37, 64, 95, 122, 367, 393, 411, 443
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	5 cut(s)	67, 217, 259, 329, 460
MabI	ACCWGGT	1 cut(s)	50
MaeII	ACGT	2 cut(s)	201, 378
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	3 cut(s)	170, 296, 386
MboI	GATC	3 cut(s)	168, 294, 384
MboII	GAAGA	5 cut(s)	125, 178, 304, 315, 404
MflI	RGATCY	1 cut(s)	294
MhlI	GDGCHC	1 cut(s)	353
MlsI	TGGCCA	1 cut(s)	461
MluCI	AATT	2 cut(s)	222, 285
MluNI	TGGCCA	1 cut(s)	461
MmeI	TCCRAC	2 cut(s)	133, 351
MnlI	CCTC	4 cut(s)	43, 98, 140, 326
Mox20I	TGGCCA	1 cut(s)	461
MscI	TGGCCA	1 cut(s)	461
MseI	TTAA	3 cut(s)	117, 345, 402
Msp20I	TGGCCA	1 cut(s)	461
MspR9I	CCNGG	2 cut(s)	52, 110
MvaI	CCWGG	2 cut(s)	52, 110
MwoI	GCNNNNNNNGC	1 cut(s)	110
NdeII	GATC	3 cut(s)	168, 294, 384
NlaIII	CATG	2 cut(s)	259, 401
NlaIV	GGNNCC	2 cut(s)	157, 337
NmuCI	GTSAC	1 cut(s)	374
NspI	RCATGY	1 cut(s)	401
PceI	AGGCCT	1 cut(s)	65
PciSI	GCTCTTC	1 cut(s)	387
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PfeI	GAWTC	2 cut(s)	20, 130
PflMI	CCANNNNNTGG	1 cut(s)	457
PkrI	GCNGC	1 cut(s)	424
Ppu21I	YACGTR	1 cut(s)	202
Psp6I	CCWGG	2 cut(s)	50, 108
PspGI	CCWGG	2 cut(s)	50, 108
PspN4I	GGNNCC	2 cut(s)	157, 337
PsuI	RGATCY	1 cut(s)	294
RsaI	GTAC	3 cut(s)	124, 245, 251
RsaNI	GTAC	3 cut(s)	123, 244, 250
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	3 cut(s)	117, 345, 402
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	3 cut(s)	168, 294, 384
ScrFI	CCNGG	2 cut(s)	52, 110
SduI	GDGCHC	1 cut(s)	353
SetI	ASST	9 cut(s)	35, 56, 90, 151, 177, 200, 204, 381, 456
SexAI	ACCWGGT	1 cut(s)	50
SfaNI	GCATC	5 cut(s)	67, 217, 259, 329, 460
Sse9I	AATT	2 cut(s)	222, 285
SseBI	AGGCCT	1 cut(s)	65
SsiI	CCGC	1 cut(s)	44
StuI	AGGCCT	1 cut(s)	65
StyD4I	CCNGG	2 cut(s)	50, 108
StyI	CCWWGG	2 cut(s)	175, 369
TaiI	ACGT	2 cut(s)	204, 381
TaqI	TCGA	2 cut(s)	75, 381
TasI	AATT	2 cut(s)	222, 285
TatI	WGTACW	2 cut(s)	243, 249
TfiI	GAWTC	2 cut(s)	20, 130
Tru1I	TTAA	3 cut(s)	117, 345, 402
Tru9I	TTAA	3 cut(s)	117, 345, 402
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	1 cut(s)	422
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	1 cut(s)	33
TspGWI	ACGGA	3 cut(s)	234, 328, 345
Van91I	CCANNNNNTGG	1 cut(s)	457
XceI	RCATGY	1 cut(s)	401
ZraI	GACGTC	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.