Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8270887.1

Orthogroup ID

OG0006107

Physical Location & Seq

Genomic Coordinates Forward (+)

102 .. 819

Gene Structure 718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8270887.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atgatagtgaggactcctccagtgaagaagcgacgggggccggaaatcgagagcccaccaccgtctgcggcggccggccctctcgtcatctacgaggaccacccttctccttccccgcttcttcaacctaccgacgacggttcctcccaccacatgctctgcacctatcaatgccgccaaatggttaaatcagagtttctagatgccttgagtaatgcagagaagcaagttcaggattatcaatctagattggaggcattaaatgacaactttcgcaaagttgttcatagcttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000075 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005819 GO:0005856 GO:0006996 GO:0007049 GO:0007059 GO:0007080 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0008608 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015630 GO:0016043 GO:0022402 GO:0030071 GO:0031577 GO:0031967 GO:0031975 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0048285 GO:0048519 GO:0048523 GO:0050000 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0071840 GO:0072686 GO:0098687 GO:0098813 GO:0140014 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko04110 ko04914 ko05203 map04110 map04914 map05203

Pfam Domains

Protein Families

DUF4094 Galactosyl_T MAD

Protein Analysis

98

Amino Acids

11.03

Weight (kDa)

6.4

Isoelectric Point (pI)

76.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49880
fragaria_vesca	FvH4_5g27851 FvH4_5g27851 FvH4_5g27851 FvH4_5g27851 FvH4_5g27851 FvH4_5g27851 FvH4_5g27851
malus_domestica	MD08G1248100.v1.1 MD15G1442500.v1.1 MD15G1442900.v1.1
prunus_persica	Prupe.1G585300_v2.0.a1 Prupe.1G585300_v2.0.a1
pyrus_communis	pycom08g21490 pycom15g39070
rosa_chinensis	RchiOBHm_Chr7g0219751
rosa_laevigata	RLG00000002272
rosa_multiflora	Rmu_co8270887.1_g000001 Rmu_sc0007335.1_g000005
rosa_roxburghii	Rroxscaffold_3G00239880
rosa_rugosa	Rorug07G0187600 Rorug07G0187700
rosa_samantha	Rh7AG331300 Rh7BG321100 Rh7CG348700 Rh7DG326800
rosa_wichuraiana	Rw7G027890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	68, 71, 116, 175
AcoI	YGGCCR	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	125
AluBI	AGCT	1 cut(s)	291
AluI	AGCT	1 cut(s)	291
AoxI	GGCC	3 cut(s)	38, 72, 76
AspS9I	GGNCC	3 cut(s)	38, 77, 97
AvaII	GGWCC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	56
BfaI	CTAG	2 cut(s)	200, 246
BisI	GCNGC	3 cut(s)	69, 72, 175
BlsI	GCNGC	3 cut(s)	70, 73, 176
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	3 cut(s)	38, 77, 97
BmiI	GGNNCC	2 cut(s)	39, 142
BmsI	GCATC	1 cut(s)	193
BplI	GAGNNNNNCTC	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	229
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseNI	ACTGG	1 cut(s)	20
BseRI	GAGGAG	1 cut(s)	6
BseX3I	CGGCCG	1 cut(s)	72
BsgI	GTGCAG	1 cut(s)	145
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	3 cut(s)	40, 74, 78
BsiEI	CGRYCG	1 cut(s)	75
BsiSI	CCGG	2 cut(s)	41, 75
BslI	CCNNNNNNNGG	1 cut(s)	181
BsnI	GGCC	3 cut(s)	40, 74, 78
Bsp1286I	GDGCHC	1 cut(s)	56
BspACI	CCGC	4 cut(s)	68, 71, 116, 175
BspANI	GGCC	3 cut(s)	40, 74, 78
BspLI	GGNNCC	2 cut(s)	39, 142
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	74
Bst4CI	ACNGT	2 cut(s)	63, 140
BstC8I	GCNNGC	1 cut(s)	76
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNSI	RCATGY	1 cut(s)	157
BstZI	CGGCCG	1 cut(s)	72
BsuRI	GGCC	3 cut(s)	40, 74, 78
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	3 cut(s)	38, 77, 97
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	5 cut(s)	40, 54, 74, 78, 291
CviKI_1	RGCY	5 cut(s)	40, 54, 74, 78, 291
EaeI	YGGCCR	1 cut(s)	72
EagI	CGGCCG	1 cut(s)	72
EclXI	CGGCCG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	97
Eco52I	CGGCCG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	56
FaeI	CATG	1 cut(s)	157
FaiI	YATR	2 cut(s)	155, 288
FatI	CATG	1 cut(s)	153
FauI	CCCGC	1 cut(s)	123
Fnu4HI	GCNGC	3 cut(s)	69, 72, 175
FriOI	GRGCYC	1 cut(s)	56
FseI	GGCCGGCC	1 cut(s)	78
Fsp4HI	GCNGC	3 cut(s)	69, 72, 175
FspBI	CTAG	2 cut(s)	200, 246
GluI	GCNGC	3 cut(s)	69, 72, 175
HaeIII	GGCC	3 cut(s)	40, 74, 78
HapII	CCGG	2 cut(s)	41, 75
Hin1II	CATG	1 cut(s)	157
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	2 cut(s)	41, 75
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	4 cut(s)	49, 200, 233, 246
Hpy99I	CGWCG	3 cut(s)	36, 137, 140
HpyAV	CCTTC	2 cut(s)	114, 120
HpyCH4III	ACNGT	2 cut(s)	63, 140
HpyCH4V	TGCA	2 cut(s)	162, 218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
Hsp92II	CATG	1 cut(s)	157
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
LpnPI	CCDG	4 cut(s)	33, 54, 88, 218
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	2 cut(s)	200, 246
MboII	GAAGA	2 cut(s)	37, 113
MhlI	GDGCHC	1 cut(s)	56
MlyI	GAGTC	1 cut(s)	7
MnlI	CCTC	6 cut(s)	3, 27, 88, 90, 154, 247
MroNI	GCCGGC	1 cut(s)	74
MseI	TTAA	2 cut(s)	186, 260
MspI	CCGG	2 cut(s)	41, 75
MwoI	GCNNNNNNNGC	1 cut(s)	37
NaeI	GCCGGC	1 cut(s)	76
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	2 cut(s)	39, 142
NspI	RCATGY	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PdiI	GCCGGC	1 cut(s)	76
PkrI	GCNGC	3 cut(s)	70, 73, 176
PleI	GAGTC	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	7
PspN4I	GGNNCC	2 cut(s)	39, 142
PspPI	GGNCC	3 cut(s)	38, 77, 97
RigI	GGCCGGCC	1 cut(s)	78
SaqAI	TTAA	2 cut(s)	186, 260
SatI	GCNGC	3 cut(s)	69, 72, 175
Sau96I	GGNCC	3 cut(s)	38, 77, 97
SchI	GAGTC	1 cut(s)	7
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	3 cut(s)	130, 167, 293
SfaNI	GCATC	1 cut(s)	193
SinI	GGWCC	1 cut(s)	97
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
SsiI	CCGC	4 cut(s)	68, 71, 116, 175
SspMI	CTAG	2 cut(s)	200, 246
TaaI	ACNGT	2 cut(s)	63, 140
TaqI	TCGA	1 cut(s)	48
TauI	GCSGC	3 cut(s)	71, 74, 177
Tru1I	TTAA	2 cut(s)	186, 260
Tru9I	TTAA	2 cut(s)	186, 260
TscAI	CASTG	1 cut(s)	27
TspDTI	ATGAA	1 cut(s)	275
TspRI	CASTG	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	97
XbaI	TCTAGA	2 cut(s)	199, 245
XceI	RCATGY	1 cut(s)	157
XspI	CTAG	2 cut(s)	200, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.