MD16G1063100.v1.1

C2H2-type zinc finger

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
4476502 .. 4478205
1704 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1063100.v1.1.491

Sequence Viewer

Length: 1704 bp
ATGAAAAGAAATCCAACCATGGAGAGAGAAGATCAGAACAATCAGAACCAGAAAAAGAAATTTGTGTGCAAGTTTTGCAGCAAAAGGTTCCCCTGTGGGAAGTCATTGGGTGGTCACATAAGAACCCATCTGAAGATTCTGAACAAAAAACCAGCTATTCAAAAAGAAGAAGAGGAAGAAGATGATGAAATTATAGCCAACGCTGCTTCTAGGATTGTAAAGTTTTCACCTTTAGATGGTGGGCATTCTGGGTATTCTCTCAGAGAAAACCCCAAGAAAACATGGAGGTTTTCGGATGCGGACCCCAATTTCCAGTTGCAGCAGGAGAAGGCGTGTAAAGTATGCGGCAAAGGGTTTCAGTCACTGAAAGCTCTGTGTGGTCACATGGCTTGTCACTCGGAGAAGGAGAAGCTGATGAACAAGCTTGAAGAAATCTTAGAGTTCGATGAGAAGCAGAAGCTGCTTGATGTAATGGACAGTCAGTCGGATACTGAGACATCGGCTCCTCCGAGGCAGAGAAGGATATCCAAAAGATTGAAGCAGCAGAATCTGGATGTTTACTCGTCTGTGGCAAATGGTGGTTCGTCATCTGGTGGTTCCGGAATCGAGCAAGAGCAGCAAGAAGTTGCTATTTGTTTGATGATGCTGTCACGCGATTCGGGTAGTAAAGGGGGTTTGAATTCGTTTGCTGAGTCTTCAGACAACACCTCTGTGGTTTTGGAGGCGAAATCATCGTCTATCGATGTGAGGATTAGTACTAAGAAAGGTATGAACTGTGCCTATAAAGTGAGTGATGTTATAGGGATGAAGAGAGCAAGAGAGAAAAAGTTCAACTGTGAGGAGATGGGTGTTTCTGACAATTCTGATTCCGGGTATTTTAGACATGAACGACCTAAGAAAGTTGATTCGGAAGTTTCAGAAGATGGGTTTTTTAGGAATGGTGAATTTCACAAGGGTAGAGCAGAATTTGGATCCAGAATCGAGGGATATGAGTCCTATGATGTGAAATTAAGGAAGGGTTTTCGTGTTGAATCTGAATTAGGCAAGGATGTGCCAAATGCAGAAGATCGTAGTCCTGATCAAGTGCATGGAGATAGAAGGACTTTGAAGTATGCATTGAGAAATACAACCAAGAATGGAACTTTTCACAGACCAATAGCTGATGATTCTTCCAATGTCGAACCCTGCAGAAATACACGAAAGAGCGGAAAATACGAGTGCTTGTTGACATGTAACAAAACGTTCCATTCTCACAGGGCTCTTGGGGCGCACAGAGCAAGTCACACCAAGACCACTGCTTACTCTGAGTCCATCTATGAGAGTGGGGAAAACAGCATGGACACCGATCCCTCTCCAATTCTGACACCCGCAAGCAGCAAGCTTGCTGAGCAGCCTTGCAGTGGGAAGAAACCAATGGATGATCAGGACTTCAGTGGCAGTGCAAAGAGATGTTCAGGGTCCAAGAAAAGCAAGGGGCATGAGTGTCCCTTCTGCTTCAAGGTTTTCAGGTCAGGCCAAGCTTTGGGCGGTCACAAAAGGTCACATTTTGTTGGGGGATGTGAAGTCAAAACTGTGGTACTTGGGCAGCAAGAACCTGATCAATCCCCTCCTCATGAGGCTGAAATCACAGCACTATTTGATCTCAATCTTCCAGCTCCAATGGAGGATGAAGCACATGACCATTTTGAATACATGGCGTGGTAG

Protein Analysis

568

Amino Acids

63.42

Weight (kDa)

8.28

Isoelectric Point (pI)

54.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 21 - 45 1e-05 C2H2-type zinc finger
zf-C2H2_6 PF13912 112 - 134 1.2e-06 C2H2-type zinc finger
zf-C2H2_6 PF13912 493 - 515 3.4e-08 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012139)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1522
AccBSI CCGCTC 1 cut(s) 1206
AccII CGCG 1 cut(s) 654
AccIII TCCGGA 1 cut(s) 599
AciI CCGC 5 cut(s) 299, 345, 1206, 1368, 1527
AclI AACGTT 1 cut(s) 1241
AclWI GGATC 3 cut(s) 966, 979, 1340
AcsI RAATTY 4 cut(s) 59, 679, 944, 965
AcuI CTGAAG 3 cut(s) 152, 681, 1414
AfaI GTAC 2 cut(s) 757, 1578
AfiI CCNNNNNNNGG 3 cut(s) 236, 1400, 1522
AflIII ACRYGT 1 cut(s) 1229
AgsI TTSAA 9 cut(s) 161, 428, 538, 679, 832, 1031, 1108, 1498, 1688
AhdI GACNNNNNGTC 1 cut(s) 481
AleI CACNNNNGTG 1 cut(s) 710
AluBI AGCT 9 cut(s) 155, 371, 412, 424, 460, 1160, 1381, 1520, 1655
AluI AGCT 9 cut(s) 155, 371, 412, 424, 460, 1160, 1381, 1520, 1655
Alw26I GTCTC 1 cut(s) 488
AlwI GGATC 3 cut(s) 966, 979, 1340
AlwNI CAGNNNCTG 3 cut(s) 364, 460, 550
Aor13HI TCCGGA 1 cut(s) 599
AoxI GGCC 1 cut(s) 1513
ApeKI GCWGC 9 cut(s) 78, 203, 319, 460, 541, 616, 1374, 1390, 1585
ApoI RAATTY 4 cut(s) 59, 679, 944, 965
ArsI GACNNNNNNTTYG 2 cut(s) 719, 751
Asp700I GAANNNNTTC 1 cut(s) 827
AspLEI GCGC 1 cut(s) 1270
AspS9I GGNCC 2 cut(s) 301, 1458
AsuC2I CCSGG 1 cut(s) 871
AsuHPI GGTGA 2 cut(s) 219, 953
AvaII GGWCC 2 cut(s) 301, 1458
BamHI GGATCC 1 cut(s) 971
BanII GRGCYC 1 cut(s) 1261
BbsI GAAGAC 1 cut(s) 687
BbvI GCAGC 9 cut(s) 90, 190, 331, 447, 553, 628, 1386, 1402, 1597
BccI CCATC 5 cut(s) 135, 230, 838, 917, 1319
BciVI GTATCC 1 cut(s) 481
BclI TGATCA 3 cut(s) 1078, 1420, 1597
BcnI CCSGG 1 cut(s) 871
BcoDI GTCTC 1 cut(s) 488
BfaI CTAG 1 cut(s) 210
BfmI CTRYAG 1 cut(s) 1186
BfuI GTATCC 1 cut(s) 481
BlpI GCTNAGC 1 cut(s) 1386
BmcAI AGTACT 1 cut(s) 757
Bme1390I CCNGG 1 cut(s) 871
Bme18I GGWCC 2 cut(s) 301, 1458
BmeRI GACNNNNNGTC 1 cut(s) 481
BmgT120I GGNCC 2 cut(s) 301, 1458
BmiI GGNNCC 6 cut(s) 89, 303, 504, 598, 973, 1459
BmrFI CCNGG 1 cut(s) 871
BmsI GCATC 2 cut(s) 286, 633
BpiI GAAGAC 1 cut(s) 687
Bpu1102I GCTNAGC 1 cut(s) 1386
BpuMI CCSGG 1 cut(s) 871
Bsa29I ATCGAT 1 cut(s) 741
BsaBI GATNNNNATC 1 cut(s) 1644
BsaJI CCNNGG 2 cut(s) 18, 509
BsaWI WCCGGW 1 cut(s) 599
BsaXI ACNNNNNCTCC 4 cut(s) 317, 347, 487, 517
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 1400, 1522
Bse1I ACTGG 1 cut(s) 313
Bse8I GATNNNNATC 1 cut(s) 1644
BseAI TCCGGA 1 cut(s) 599
BseCI ATCGAT 1 cut(s) 741
BseDI CCNNGG 2 cut(s) 18, 509
BseGI GGATG 7 cut(s) 301, 559, 810, 1054, 1423, 1562, 1672
BseJI GATNNNNATC 1 cut(s) 1644
BseLI CCNNNNNNNGG 3 cut(s) 236, 1400, 1522
BseMII CTCAG 5 cut(s) 274, 483, 681, 1296, 1377
BseNI ACTGG 1 cut(s) 313
BseRI GAGGAG 3 cut(s) 495, 854, 1599
BseXI GCAGC 9 cut(s) 90, 190, 331, 447, 553, 628, 1386, 1402, 1597
Bsh1236I CGCG 1 cut(s) 654
BshFI GGCC 1 cut(s) 1515
BshVI ATCGAT 1 cut(s) 741
BsiSI CCGG 2 cut(s) 600, 870
BslFI GGGAC 1 cut(s) 1470
BslI CCNNNNNNNGG 3 cut(s) 236, 1400, 1522
BsmAI GTCTC 1 cut(s) 488
BsmFI GGGAC 1 cut(s) 1470
BsmI GAATGC 1 cut(s) 244
BsnI GGCC 1 cut(s) 1515
Bsp1286I GDGCHC 1 cut(s) 1261
Bsp13I TCCGGA 1 cut(s) 599
Bsp143I GATC 8 cut(s) 31, 971, 1066, 1078, 1345, 1420, 1597, 1639
Bsp1720I GCTNAGC 1 cut(s) 1386
Bsp19I CCATGG 1 cut(s) 18
BspACI CCGC 5 cut(s) 299, 345, 1206, 1368, 1527
BspANI GGCC 1 cut(s) 1515
BspCNI CTCAG 5 cut(s) 273, 484, 682, 1297, 1378
BspDI ATCGAT 1 cut(s) 741
BspEI TCCGGA 1 cut(s) 599
BspFNI CGCG 1 cut(s) 654
BspHI TCATGA 1 cut(s) 1612
BspLI GGNNCC 6 cut(s) 89, 303, 504, 598, 973, 1459
BspMAI CTGCAG 1 cut(s) 1190
BspPI GGATC 3 cut(s) 966, 979, 1340
BsrBI CCGCTC 1 cut(s) 1206
BsrI ACTGG 1 cut(s) 313
BssECI CCNNGG 2 cut(s) 18, 509
BssMI GATC 8 cut(s) 31, 971, 1066, 1078, 1345, 1420, 1597, 1639
BssT1I CCWWGG 1 cut(s) 18
Bst4CI ACNGT 4 cut(s) 479, 776, 836, 1573
Bst6I CTCTTC 2 cut(s) 165, 803
BstAPI GCANNNNNTGC 2 cut(s) 75, 460
BstC8I GCNNGC 3 cut(s) 1372, 1379, 1383
BstDEI CTNAG 8 cut(s) 260, 436, 492, 690, 759, 894, 1305, 1386
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 7 cut(s) 301, 559, 810, 1054, 1423, 1562, 1672
BstFNI CGCG 1 cut(s) 654
BstHHI GCGC 1 cut(s) 1270
BstKTI GATC 8 cut(s) 34, 974, 1069, 1081, 1348, 1423, 1600, 1642
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 8 cut(s) 31, 971, 1066, 1078, 1345, 1420, 1597, 1639
BstMWI GCNNNNNNNGC 7 cut(s) 75, 203, 460, 616, 1265, 1274, 1387
BstNSI RCATGY 1 cut(s) 1233
BstSCI CCNGG 1 cut(s) 869
BstSFI CTRYAG 1 cut(s) 1186
BstUI CGCG 1 cut(s) 654
BstV1I GCAGC 9 cut(s) 90, 190, 331, 447, 553, 628, 1386, 1402, 1597
BstV2I GAAGAC 1 cut(s) 687
BstX2I RGATCY 1 cut(s) 971
BstYI RGATCY 1 cut(s) 971
Bsu15I ATCGAT 1 cut(s) 741
BsuI GTATCC 1 cut(s) 481
BsuRI GGCC 1 cut(s) 1515
BsuTUI ATCGAT 1 cut(s) 741
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 7 cut(s) 301, 559, 810, 1054, 1423, 1562, 1672
BtsI GCAGTG 3 cut(s) 1293, 1405, 1444
BtsIMutI CAGTG 5 cut(s) 362, 1293, 1405, 1438, 1444
Cac8I GCNNGC 3 cut(s) 1372, 1379, 1383
CaiI CAGNNNCTG 3 cut(s) 364, 460, 550
CciI TCATGA 1 cut(s) 1612
CfoI GCGC 1 cut(s) 1270
Cfr13I GGNCC 2 cut(s) 301, 1458
ClaI ATCGAT 1 cut(s) 741
Csp6I GTAC 2 cut(s) 756, 1577
CviQI GTAC 2 cut(s) 756, 1577
DdeI CTNAG 8 cut(s) 260, 436, 492, 690, 759, 894, 1305, 1386
DpnI GATC 8 cut(s) 33, 973, 1068, 1080, 1347, 1422, 1599, 1641
DpnII GATC 8 cut(s) 31, 971, 1066, 1078, 1345, 1420, 1597, 1639
DriI GACNNNNNGTC 1 cut(s) 481
Eam1104I CTCTTC 2 cut(s) 165, 803
Eam1105I GACNNNNNGTC 1 cut(s) 481
EarI CTCTTC 2 cut(s) 165, 803
Eco130I CCWWGG 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 1261
Eco32I GATATC 1 cut(s) 525
Eco47I GGWCC 2 cut(s) 301, 1458
Eco57I CTGAAG 3 cut(s) 152, 681, 1414
EcoRI GAATTC 1 cut(s) 679
EcoRV GATATC 1 cut(s) 525
EcoT14I CCWWGG 1 cut(s) 18
EcoT22I ATGCAT 1 cut(s) 1117
EcoT38I GRGCYC 1 cut(s) 1261
ErhI CCWWGG 1 cut(s) 18
FaqI GGGAC 1 cut(s) 1470
FauI CCCGC 1 cut(s) 1375
FbaI TGATCA 3 cut(s) 1078, 1420, 1597
FokI GGATG 7 cut(s) 308, 566, 817, 1061, 1430, 1569, 1679
FriOI GRGCYC 1 cut(s) 1261
FspBI CTAG 1 cut(s) 210
GlaI GCGC 1 cut(s) 1269
HaeIII GGCC 1 cut(s) 1515
HapII CCGG 2 cut(s) 600, 870
HhaI GCGC 1 cut(s) 1270
Hin6I GCGC 1 cut(s) 1268
HinP1I GCGC 1 cut(s) 1268
HincII GTYRAC 1 cut(s) 1227
HindII GTYRAC 1 cut(s) 1227
HindIII AAGCTT 3 cut(s) 422, 1379, 1518
HpaII CCGG 2 cut(s) 600, 870
HphI GGTGA 2 cut(s) 219, 953
Hpy166II GTNNAC 2 cut(s) 559, 1227
Hpy188III TCNNGA 6 cut(s) 551, 600, 975, 1076, 1424, 1613
Hpy8I GTNNAC 2 cut(s) 559, 1227
HpyAV CCTTC 6 cut(s) 322, 397, 513, 1009, 1092, 1498
HpyCH4III ACNGT 4 cut(s) 479, 776, 836, 1573
HpyCH4IV ACGT 1 cut(s) 1241
HpyCH4V TGCA 9 cut(s) 69, 78, 319, 1061, 1087, 1115, 1188, 1398, 1442
HpyF10VI GCNNNNNNNGC 7 cut(s) 75, 203, 460, 616, 1265, 1274, 1387
HpyF3I CTNAG 8 cut(s) 260, 436, 492, 690, 759, 894, 1305, 1386
HpySE526I ACGT 1 cut(s) 1241
HspAI GCGC 1 cut(s) 1268
Kpn2I TCCGGA 1 cut(s) 599
Ksp22I TGATCA 3 cut(s) 1078, 1420, 1597
Kzo9I GATC 8 cut(s) 31, 971, 1066, 1078, 1345, 1420, 1597, 1639
LmnI GCTCC 2 cut(s) 508, 1660
Lsp1109I GCAGC 9 cut(s) 90, 190, 331, 447, 553, 628, 1386, 1402, 1597
LweI GCATC 2 cut(s) 286, 633
MaeI CTAG 1 cut(s) 210
MaeII ACGT 1 cut(s) 1241
MaeIII GTNAC 9 cut(s) 113, 360, 380, 392, 648, 1232, 1280, 1529, 1539
MalI GATC 8 cut(s) 33, 973, 1068, 1080, 1347, 1422, 1599, 1641
MbiI CCGCTC 1 cut(s) 1206
MboI GATC 8 cut(s) 31, 971, 1066, 1078, 1345, 1420, 1597, 1639
MflI RGATCY 1 cut(s) 971
MhlI GDGCHC 1 cut(s) 1261
MlyI GAGTC 3 cut(s) 701, 1001, 1316
MmeI TCCRAC 2 cut(s) 38, 465
Mph1103I ATGCAT 1 cut(s) 1117
MroI TCCGGA 1 cut(s) 599
MroXI GAANNNNTTC 1 cut(s) 827
MseI TTAA 1 cut(s) 1010
MslI CAYNNNNRTG 1 cut(s) 710
MspI CCGG 2 cut(s) 600, 870
MspR9I CCNGG 1 cut(s) 871
Mva1269I GAATGC 1 cut(s) 244
MvnI CGCG 1 cut(s) 654
MwoI GCNNNNNNNGC 7 cut(s) 75, 203, 460, 616, 1265, 1274, 1387
NciI CCSGG 1 cut(s) 871
NcoI CCATGG 1 cut(s) 18
NdeII GATC 8 cut(s) 31, 971, 1066, 1078, 1345, 1420, 1597, 1639
NlaIV GGNNCC 6 cut(s) 89, 303, 504, 598, 973, 1459
NmuCI GTSAC 8 cut(s) 113, 360, 380, 392, 648, 1280, 1529, 1539
NsiI ATGCAT 1 cut(s) 1117
NspI RCATGY 1 cut(s) 1233
OliI CACNNNNGTG 1 cut(s) 710
PagI TCATGA 1 cut(s) 1612
PciI ACATGT 1 cut(s) 1229
PcsI WCGNNNNNNNCGW 1 cut(s) 506
PctI GAATGC 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 827
PfeI GAWTC 9 cut(s) 136, 547, 603, 656, 866, 905, 978, 1031, 1166
PflMI CCANNNNNTGG 1 cut(s) 1522
PleI GAGTC 3 cut(s) 700, 1000, 1315
PpsI GAGTC 3 cut(s) 700, 1000, 1315
PscI ACATGT 1 cut(s) 1229
Psp1406I AACGTT 1 cut(s) 1241
PspN4I GGNNCC 6 cut(s) 89, 303, 504, 598, 973, 1459
PspPI GGNCC 2 cut(s) 301, 1458
PstI CTGCAG 1 cut(s) 1190
PstNI CAGNNNCTG 3 cut(s) 364, 460, 550
PsuI RGATCY 1 cut(s) 971
RsaI GTAC 2 cut(s) 757, 1578
RsaNI GTAC 2 cut(s) 756, 1577
RseI CAYNNNNRTG 1 cut(s) 710
SaqAI TTAA 1 cut(s) 1010
Sau3AI GATC 8 cut(s) 31, 971, 1066, 1078, 1345, 1420, 1597, 1639
Sau96I GGNCC 2 cut(s) 301, 1458
ScaI AGTACT 1 cut(s) 757
SchI GAGTC 3 cut(s) 701, 1001, 1316
ScrFI CCNGG 1 cut(s) 871
SduI GDGCHC 1 cut(s) 1261
SfaNI GCATC 2 cut(s) 286, 633
SfcI CTRYAG 1 cut(s) 1186
SinI GGWCC 2 cut(s) 301, 1458
SmiMI CAYNNNNRTG 1 cut(s) 710
SsiI CCGC 5 cut(s) 299, 345, 1206, 1368, 1527
SspMI CTAG 1 cut(s) 210
StyD4I CCNGG 1 cut(s) 869
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 4 cut(s) 479, 776, 836, 1573
TaiI ACGT 1 cut(s) 1244
TaqI TCGA 5 cut(s) 444, 606, 741, 981, 1179
TatI WGTACW 1 cut(s) 755
TauI GCSGC 1 cut(s) 348
TfiI GAWTC 9 cut(s) 136, 547, 603, 656, 866, 905, 978, 1031, 1166
Tru1I TTAA 1 cut(s) 1010
Tru9I TTAA 1 cut(s) 1010
TscAI CASTG 5 cut(s) 369, 1300, 1405, 1438, 1444
TseFI GTSAC 8 cut(s) 113, 360, 380, 392, 648, 1280, 1529, 1539
TseI GCWGC 9 cut(s) 78, 203, 319, 460, 541, 616, 1374, 1390, 1585
Tsp45I GTSAC 8 cut(s) 113, 360, 380, 392, 648, 1280, 1529, 1539
TspDTI ATGAA 7 cut(s) 17, 201, 431, 785, 821, 900, 1683
TspRI CASTG 5 cut(s) 369, 1300, 1405, 1438, 1444
Van91I CCANNNNNTGG 1 cut(s) 1522
VpaK11BI GGWCC 2 cut(s) 301, 1458
XapI RAATTY 4 cut(s) 59, 679, 944, 965
XceI RCATGY 1 cut(s) 1233
XmnI GAANNNNTTC 1 cut(s) 827
XspI CTAG 1 cut(s) 210
ZrmI AGTACT 1 cut(s) 757
Zsp2I ATGCAT 1 cut(s) 1117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.