C2H2-type zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G26610 |
| fragaria_vesca | FvH4_4g30350 |
| malus_domestica | MD13G1064600.v1.1 MD16G1063100.v1.1 |
| prunus_persica | Prupe.1G283600_v2.0.a1 |
| pyrus_communis | pycom13g05700 pycom16g05530 |
| rosa_chinensis | RchiOBHm_Chr4g0438641 |
| rosa_laevigata | RLG00000006345 |
| rosa_multiflora | Rmu_co8449659.1_g000001 Rmu_sc0006646.1_g000008 |
| rosa_roxburghii | Rroxscaffold_5G00379630 |
| rosa_rugosa | Rorug04G0312100 |
| rosa_samantha | Rh4AG362500 Rh4BG373900 Rh4CG387800 Rh4DG368600 |
| rosa_wichuraiana | Rw0G007120 Rw0G016670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1522 |
| AccBSI | CCGCTC | 1 cut(s) | 1206 |
| AccII | CGCG | 1 cut(s) | 654 |
| AccIII | TCCGGA | 1 cut(s) | 599 |
| AciI | CCGC | 5 cut(s) | 299, 345, 1206, 1368, 1527 |
| AclI | AACGTT | 1 cut(s) | 1241 |
| AclWI | GGATC | 3 cut(s) | 966, 979, 1340 |
| AcsI | RAATTY | 4 cut(s) | 59, 679, 944, 965 |
| AcuI | CTGAAG | 3 cut(s) | 152, 681, 1414 |
| AfaI | GTAC | 2 cut(s) | 757, 1578 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 236, 1400, 1522 |
| AflIII | ACRYGT | 1 cut(s) | 1229 |
| AgsI | TTSAA | 9 cut(s) | 161, 428, 538, 679, 832, 1031, 1108, 1498, 1688 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 481 |
| AleI | CACNNNNGTG | 1 cut(s) | 710 |
| AluBI | AGCT | 9 cut(s) | 155, 371, 412, 424, 460, 1160, 1381, 1520, 1655 |
| AluI | AGCT | 9 cut(s) | 155, 371, 412, 424, 460, 1160, 1381, 1520, 1655 |
| Alw26I | GTCTC | 1 cut(s) | 488 |
| AlwI | GGATC | 3 cut(s) | 966, 979, 1340 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 364, 460, 550 |
| Aor13HI | TCCGGA | 1 cut(s) | 599 |
| AoxI | GGCC | 1 cut(s) | 1513 |
| ApeKI | GCWGC | 9 cut(s) | 78, 203, 319, 460, 541, 616, 1374, 1390, 1585 |
| ApoI | RAATTY | 4 cut(s) | 59, 679, 944, 965 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 719, 751 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 827 |
| AspLEI | GCGC | 1 cut(s) | 1270 |
| AspS9I | GGNCC | 2 cut(s) | 301, 1458 |
| AsuC2I | CCSGG | 1 cut(s) | 871 |
| AsuHPI | GGTGA | 2 cut(s) | 219, 953 |
| AvaII | GGWCC | 2 cut(s) | 301, 1458 |
| BamHI | GGATCC | 1 cut(s) | 971 |
| BanII | GRGCYC | 1 cut(s) | 1261 |
| BbsI | GAAGAC | 1 cut(s) | 687 |
| BbvI | GCAGC | 9 cut(s) | 90, 190, 331, 447, 553, 628, 1386, 1402, 1597 |
| BccI | CCATC | 5 cut(s) | 135, 230, 838, 917, 1319 |
| BciVI | GTATCC | 1 cut(s) | 481 |
| BclI | TGATCA | 3 cut(s) | 1078, 1420, 1597 |
| BcnI | CCSGG | 1 cut(s) | 871 |
| BcoDI | GTCTC | 1 cut(s) | 488 |
| BfaI | CTAG | 1 cut(s) | 210 |
| BfmI | CTRYAG | 1 cut(s) | 1186 |
| BfuI | GTATCC | 1 cut(s) | 481 |
| BlpI | GCTNAGC | 1 cut(s) | 1386 |
| BmcAI | AGTACT | 1 cut(s) | 757 |
| Bme1390I | CCNGG | 1 cut(s) | 871 |
| Bme18I | GGWCC | 2 cut(s) | 301, 1458 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 481 |
| BmgT120I | GGNCC | 2 cut(s) | 301, 1458 |
| BmiI | GGNNCC | 6 cut(s) | 89, 303, 504, 598, 973, 1459 |
| BmrFI | CCNGG | 1 cut(s) | 871 |
| BmsI | GCATC | 2 cut(s) | 286, 633 |
| BpiI | GAAGAC | 1 cut(s) | 687 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1386 |
| BpuMI | CCSGG | 1 cut(s) | 871 |
| Bsa29I | ATCGAT | 1 cut(s) | 741 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1644 |
| BsaJI | CCNNGG | 2 cut(s) | 18, 509 |
| BsaWI | WCCGGW | 1 cut(s) | 599 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 317, 347, 487, 517 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 236, 1400, 1522 |
| Bse1I | ACTGG | 1 cut(s) | 313 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1644 |
| BseAI | TCCGGA | 1 cut(s) | 599 |
| BseCI | ATCGAT | 1 cut(s) | 741 |
| BseDI | CCNNGG | 2 cut(s) | 18, 509 |
| BseGI | GGATG | 7 cut(s) | 301, 559, 810, 1054, 1423, 1562, 1672 |
| BseJI | GATNNNNATC | 1 cut(s) | 1644 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 236, 1400, 1522 |
| BseMII | CTCAG | 5 cut(s) | 274, 483, 681, 1296, 1377 |
| BseNI | ACTGG | 1 cut(s) | 313 |
| BseRI | GAGGAG | 3 cut(s) | 495, 854, 1599 |
| BseXI | GCAGC | 9 cut(s) | 90, 190, 331, 447, 553, 628, 1386, 1402, 1597 |
| Bsh1236I | CGCG | 1 cut(s) | 654 |
| BshFI | GGCC | 1 cut(s) | 1515 |
| BshVI | ATCGAT | 1 cut(s) | 741 |
| BsiSI | CCGG | 2 cut(s) | 600, 870 |
| BslFI | GGGAC | 1 cut(s) | 1470 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 236, 1400, 1522 |
| BsmAI | GTCTC | 1 cut(s) | 488 |
| BsmFI | GGGAC | 1 cut(s) | 1470 |
| BsmI | GAATGC | 1 cut(s) | 244 |
| BsnI | GGCC | 1 cut(s) | 1515 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1261 |
| Bsp13I | TCCGGA | 1 cut(s) | 599 |
| Bsp143I | GATC | 8 cut(s) | 31, 971, 1066, 1078, 1345, 1420, 1597, 1639 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1386 |
| Bsp19I | CCATGG | 1 cut(s) | 18 |
| BspACI | CCGC | 5 cut(s) | 299, 345, 1206, 1368, 1527 |
| BspANI | GGCC | 1 cut(s) | 1515 |
| BspCNI | CTCAG | 5 cut(s) | 273, 484, 682, 1297, 1378 |
| BspDI | ATCGAT | 1 cut(s) | 741 |
| BspEI | TCCGGA | 1 cut(s) | 599 |
| BspFNI | CGCG | 1 cut(s) | 654 |
| BspHI | TCATGA | 1 cut(s) | 1612 |
| BspLI | GGNNCC | 6 cut(s) | 89, 303, 504, 598, 973, 1459 |
| BspMAI | CTGCAG | 1 cut(s) | 1190 |
| BspPI | GGATC | 3 cut(s) | 966, 979, 1340 |
| BsrBI | CCGCTC | 1 cut(s) | 1206 |
| BsrI | ACTGG | 1 cut(s) | 313 |
| BssECI | CCNNGG | 2 cut(s) | 18, 509 |
| BssMI | GATC | 8 cut(s) | 31, 971, 1066, 1078, 1345, 1420, 1597, 1639 |
| BssT1I | CCWWGG | 1 cut(s) | 18 |
| Bst4CI | ACNGT | 4 cut(s) | 479, 776, 836, 1573 |
| Bst6I | CTCTTC | 2 cut(s) | 165, 803 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 75, 460 |
| BstC8I | GCNNGC | 3 cut(s) | 1372, 1379, 1383 |
| BstDEI | CTNAG | 8 cut(s) | 260, 436, 492, 690, 759, 894, 1305, 1386 |
| BstDSI | CCRYGG | 1 cut(s) | 18 |
| BstF5I | GGATG | 7 cut(s) | 301, 559, 810, 1054, 1423, 1562, 1672 |
| BstFNI | CGCG | 1 cut(s) | 654 |
| BstHHI | GCGC | 1 cut(s) | 1270 |
| BstKTI | GATC | 8 cut(s) | 34, 974, 1069, 1081, 1348, 1423, 1600, 1642 |
| BstMAI | GTCTC | 1 cut(s) | 488 |
| BstMBI | GATC | 8 cut(s) | 31, 971, 1066, 1078, 1345, 1420, 1597, 1639 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 75, 203, 460, 616, 1265, 1274, 1387 |
| BstNSI | RCATGY | 1 cut(s) | 1233 |
| BstSCI | CCNGG | 1 cut(s) | 869 |
| BstSFI | CTRYAG | 1 cut(s) | 1186 |
| BstUI | CGCG | 1 cut(s) | 654 |
| BstV1I | GCAGC | 9 cut(s) | 90, 190, 331, 447, 553, 628, 1386, 1402, 1597 |
| BstV2I | GAAGAC | 1 cut(s) | 687 |
| BstX2I | RGATCY | 1 cut(s) | 971 |
| BstYI | RGATCY | 1 cut(s) | 971 |
| Bsu15I | ATCGAT | 1 cut(s) | 741 |
| BsuI | GTATCC | 1 cut(s) | 481 |
| BsuRI | GGCC | 1 cut(s) | 1515 |
| BsuTUI | ATCGAT | 1 cut(s) | 741 |
| BtgI | CCRYGG | 1 cut(s) | 18 |
| BtsCI | GGATG | 7 cut(s) | 301, 559, 810, 1054, 1423, 1562, 1672 |
| BtsI | GCAGTG | 3 cut(s) | 1293, 1405, 1444 |
| BtsIMutI | CAGTG | 5 cut(s) | 362, 1293, 1405, 1438, 1444 |
| Cac8I | GCNNGC | 3 cut(s) | 1372, 1379, 1383 |
| CaiI | CAGNNNCTG | 3 cut(s) | 364, 460, 550 |
| CciI | TCATGA | 1 cut(s) | 1612 |
| CfoI | GCGC | 1 cut(s) | 1270 |
| Cfr13I | GGNCC | 2 cut(s) | 301, 1458 |
| ClaI | ATCGAT | 1 cut(s) | 741 |
| Csp6I | GTAC | 2 cut(s) | 756, 1577 |
| CviQI | GTAC | 2 cut(s) | 756, 1577 |
| DdeI | CTNAG | 8 cut(s) | 260, 436, 492, 690, 759, 894, 1305, 1386 |
| DpnI | GATC | 8 cut(s) | 33, 973, 1068, 1080, 1347, 1422, 1599, 1641 |
| DpnII | GATC | 8 cut(s) | 31, 971, 1066, 1078, 1345, 1420, 1597, 1639 |
| DriI | GACNNNNNGTC | 1 cut(s) | 481 |
| Eam1104I | CTCTTC | 2 cut(s) | 165, 803 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 481 |
| EarI | CTCTTC | 2 cut(s) | 165, 803 |
| Eco130I | CCWWGG | 1 cut(s) | 18 |
| Eco24I | GRGCYC | 1 cut(s) | 1261 |
| Eco32I | GATATC | 1 cut(s) | 525 |
| Eco47I | GGWCC | 2 cut(s) | 301, 1458 |
| Eco57I | CTGAAG | 3 cut(s) | 152, 681, 1414 |
| EcoRI | GAATTC | 1 cut(s) | 679 |
| EcoRV | GATATC | 1 cut(s) | 525 |
| EcoT14I | CCWWGG | 1 cut(s) | 18 |
| EcoT22I | ATGCAT | 1 cut(s) | 1117 |
| EcoT38I | GRGCYC | 1 cut(s) | 1261 |
| ErhI | CCWWGG | 1 cut(s) | 18 |
| FaqI | GGGAC | 1 cut(s) | 1470 |
| FauI | CCCGC | 1 cut(s) | 1375 |
| FbaI | TGATCA | 3 cut(s) | 1078, 1420, 1597 |
| FokI | GGATG | 7 cut(s) | 308, 566, 817, 1061, 1430, 1569, 1679 |
| FriOI | GRGCYC | 1 cut(s) | 1261 |
| FspBI | CTAG | 1 cut(s) | 210 |
| GlaI | GCGC | 1 cut(s) | 1269 |
| HaeIII | GGCC | 1 cut(s) | 1515 |
| HapII | CCGG | 2 cut(s) | 600, 870 |
| HhaI | GCGC | 1 cut(s) | 1270 |
| Hin6I | GCGC | 1 cut(s) | 1268 |
| HinP1I | GCGC | 1 cut(s) | 1268 |
| HincII | GTYRAC | 1 cut(s) | 1227 |
| HindII | GTYRAC | 1 cut(s) | 1227 |
| HindIII | AAGCTT | 3 cut(s) | 422, 1379, 1518 |
| HpaII | CCGG | 2 cut(s) | 600, 870 |
| HphI | GGTGA | 2 cut(s) | 219, 953 |
| Hpy166II | GTNNAC | 2 cut(s) | 559, 1227 |
| Hpy188III | TCNNGA | 6 cut(s) | 551, 600, 975, 1076, 1424, 1613 |
| Hpy8I | GTNNAC | 2 cut(s) | 559, 1227 |
| HpyAV | CCTTC | 6 cut(s) | 322, 397, 513, 1009, 1092, 1498 |
| HpyCH4III | ACNGT | 4 cut(s) | 479, 776, 836, 1573 |
| HpyCH4IV | ACGT | 1 cut(s) | 1241 |
| HpyCH4V | TGCA | 9 cut(s) | 69, 78, 319, 1061, 1087, 1115, 1188, 1398, 1442 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 75, 203, 460, 616, 1265, 1274, 1387 |
| HpyF3I | CTNAG | 8 cut(s) | 260, 436, 492, 690, 759, 894, 1305, 1386 |
| HpySE526I | ACGT | 1 cut(s) | 1241 |
| HspAI | GCGC | 1 cut(s) | 1268 |
| Kpn2I | TCCGGA | 1 cut(s) | 599 |
| Ksp22I | TGATCA | 3 cut(s) | 1078, 1420, 1597 |
| Kzo9I | GATC | 8 cut(s) | 31, 971, 1066, 1078, 1345, 1420, 1597, 1639 |
| LmnI | GCTCC | 2 cut(s) | 508, 1660 |
| Lsp1109I | GCAGC | 9 cut(s) | 90, 190, 331, 447, 553, 628, 1386, 1402, 1597 |
| LweI | GCATC | 2 cut(s) | 286, 633 |
| MaeI | CTAG | 1 cut(s) | 210 |
| MaeII | ACGT | 1 cut(s) | 1241 |
| MaeIII | GTNAC | 9 cut(s) | 113, 360, 380, 392, 648, 1232, 1280, 1529, 1539 |
| MalI | GATC | 8 cut(s) | 33, 973, 1068, 1080, 1347, 1422, 1599, 1641 |
| MbiI | CCGCTC | 1 cut(s) | 1206 |
| MboI | GATC | 8 cut(s) | 31, 971, 1066, 1078, 1345, 1420, 1597, 1639 |
| MflI | RGATCY | 1 cut(s) | 971 |
| MhlI | GDGCHC | 1 cut(s) | 1261 |
| MlyI | GAGTC | 3 cut(s) | 701, 1001, 1316 |
| MmeI | TCCRAC | 2 cut(s) | 38, 465 |
| Mph1103I | ATGCAT | 1 cut(s) | 1117 |
| MroI | TCCGGA | 1 cut(s) | 599 |
| MroXI | GAANNNNTTC | 1 cut(s) | 827 |
| MseI | TTAA | 1 cut(s) | 1010 |
| MslI | CAYNNNNRTG | 1 cut(s) | 710 |
| MspI | CCGG | 2 cut(s) | 600, 870 |
| MspR9I | CCNGG | 1 cut(s) | 871 |
| Mva1269I | GAATGC | 1 cut(s) | 244 |
| MvnI | CGCG | 1 cut(s) | 654 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 75, 203, 460, 616, 1265, 1274, 1387 |
| NciI | CCSGG | 1 cut(s) | 871 |
| NcoI | CCATGG | 1 cut(s) | 18 |
| NdeII | GATC | 8 cut(s) | 31, 971, 1066, 1078, 1345, 1420, 1597, 1639 |
| NlaIV | GGNNCC | 6 cut(s) | 89, 303, 504, 598, 973, 1459 |
| NmuCI | GTSAC | 8 cut(s) | 113, 360, 380, 392, 648, 1280, 1529, 1539 |
| NsiI | ATGCAT | 1 cut(s) | 1117 |
| NspI | RCATGY | 1 cut(s) | 1233 |
| OliI | CACNNNNGTG | 1 cut(s) | 710 |
| PagI | TCATGA | 1 cut(s) | 1612 |
| PciI | ACATGT | 1 cut(s) | 1229 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 506 |
| PctI | GAATGC | 1 cut(s) | 244 |
| PdmI | GAANNNNTTC | 1 cut(s) | 827 |
| PfeI | GAWTC | 9 cut(s) | 136, 547, 603, 656, 866, 905, 978, 1031, 1166 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1522 |
| PleI | GAGTC | 3 cut(s) | 700, 1000, 1315 |
| PpsI | GAGTC | 3 cut(s) | 700, 1000, 1315 |
| PscI | ACATGT | 1 cut(s) | 1229 |
| Psp1406I | AACGTT | 1 cut(s) | 1241 |
| PspN4I | GGNNCC | 6 cut(s) | 89, 303, 504, 598, 973, 1459 |
| PspPI | GGNCC | 2 cut(s) | 301, 1458 |
| PstI | CTGCAG | 1 cut(s) | 1190 |
| PstNI | CAGNNNCTG | 3 cut(s) | 364, 460, 550 |
| PsuI | RGATCY | 1 cut(s) | 971 |
| RsaI | GTAC | 2 cut(s) | 757, 1578 |
| RsaNI | GTAC | 2 cut(s) | 756, 1577 |
| RseI | CAYNNNNRTG | 1 cut(s) | 710 |
| SaqAI | TTAA | 1 cut(s) | 1010 |
| Sau3AI | GATC | 8 cut(s) | 31, 971, 1066, 1078, 1345, 1420, 1597, 1639 |
| Sau96I | GGNCC | 2 cut(s) | 301, 1458 |
| ScaI | AGTACT | 1 cut(s) | 757 |
| SchI | GAGTC | 3 cut(s) | 701, 1001, 1316 |
| ScrFI | CCNGG | 1 cut(s) | 871 |
| SduI | GDGCHC | 1 cut(s) | 1261 |
| SfaNI | GCATC | 2 cut(s) | 286, 633 |
| SfcI | CTRYAG | 1 cut(s) | 1186 |
| SinI | GGWCC | 2 cut(s) | 301, 1458 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 710 |
| SsiI | CCGC | 5 cut(s) | 299, 345, 1206, 1368, 1527 |
| SspMI | CTAG | 1 cut(s) | 210 |
| StyD4I | CCNGG | 1 cut(s) | 869 |
| StyI | CCWWGG | 1 cut(s) | 18 |
| TaaI | ACNGT | 4 cut(s) | 479, 776, 836, 1573 |
| TaiI | ACGT | 1 cut(s) | 1244 |
| TaqI | TCGA | 5 cut(s) | 444, 606, 741, 981, 1179 |
| TatI | WGTACW | 1 cut(s) | 755 |
| TauI | GCSGC | 1 cut(s) | 348 |
| TfiI | GAWTC | 9 cut(s) | 136, 547, 603, 656, 866, 905, 978, 1031, 1166 |
| Tru1I | TTAA | 1 cut(s) | 1010 |
| Tru9I | TTAA | 1 cut(s) | 1010 |
| TscAI | CASTG | 5 cut(s) | 369, 1300, 1405, 1438, 1444 |
| TseFI | GTSAC | 8 cut(s) | 113, 360, 380, 392, 648, 1280, 1529, 1539 |
| TseI | GCWGC | 9 cut(s) | 78, 203, 319, 460, 541, 616, 1374, 1390, 1585 |
| Tsp45I | GTSAC | 8 cut(s) | 113, 360, 380, 392, 648, 1280, 1529, 1539 |
| TspDTI | ATGAA | 7 cut(s) | 17, 201, 431, 785, 821, 900, 1683 |
| TspRI | CASTG | 5 cut(s) | 369, 1300, 1405, 1438, 1444 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1522 |
| VpaK11BI | GGWCC | 2 cut(s) | 301, 1458 |
| XapI | RAATTY | 4 cut(s) | 59, 679, 944, 965 |
| XceI | RCATGY | 1 cut(s) | 1233 |
| XmnI | GAANNNNTTC | 1 cut(s) | 827 |
| XspI | CTAG | 1 cut(s) | 210 |
| ZrmI | AGTACT | 1 cut(s) | 757 |
| Zsp2I | ATGCAT | 1 cut(s) | 1117 |