RLG00000006345

C2H2-type zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0012139
Physical Location & Seq
Reverse (-)
6428133 .. 6429653
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006345

Sequence Viewer

Length: 1521 bp
ATGGAAGAAGACGAGTTTGCTAGAGTTACTAGGACTGCAAAGCTTTCGTCTTTGGATTCCGGGCCGGAAGGGCAATCCGGTTATCGTCTTAGGGAGAATCCCAAGAAGACTTGGAGGTTTGCCGATCACAAAGTCCCGAGTTTTCAATTCCAGCAGGAGAAAGTGTGCAAGGAATGTGGGAAAGGTTTTCCATCGCTGAAAGCTTTGTGTGGTCACATGGCTTGTCACTCGGACAAGGAGAGAAAGCTTGAAGAGATTGAAGAGTTTTCGGAGACTAGTGAGAAGCAGAAGCTGGTGATGGATAGTCAGTCTGATACTGAGACCTCATCAGCTCCAACAAAGCAGAGAAGGGTGCTGAAGAGAATGAGGGAGAACAATTTTGAATTTCATGGTGGTTGTTCATCTGGTTCTGGAGTTGAGCAAGAACAGCAGGAAGTGGCTATTAGTTTGATGATGTTGTCTCGTGATTCGGGTTATAAAGGGGGTTTGAATTCGTTTGGTGAGTCTTCGGATAACAACTCGGTGATTTTAGAGGGCAAGTCATCTTCTATTGATATGAGAATTAGTACTCAGAGAGGTCTGAGTTATGCTGCTAAAGTGAATGATGTTATGGACTTGAAGAGAGCAAGAGAGAAAAAGTTGAAGTACGAGGAGGTTACTGTTTCTGACAGTTCTGATTCTGGGTACTATATACATGAACCCAAGAAGGTCGAATCAGATGTTTCTGTAGATGGGTTTGTGAGGAATGGTGAGTTTAAGAAGTATAGAGCTGAATTCGGATCCGGGTTTGGGCGCTATGAGTCCTATGATGTTAAATCAAGAAGGGCGTTTAGCAGCAAGTCTGAAATGGTGAAGGAATTGCCACGAGAAGAAGCTTATGAACAAGCAGATAGGGGTTCTTTAAAGTATGCCTTGAGAAAATCCACCAAGAATGGCTTTCACAGACCATTTACTAGCGGCTCTTCCAGTGTAGAAGTCTACAAGAATGTTAGAAAGAGCAGCAAATATGAGTGCTTGACTTGTAACAAGACCTTCCATTCTCATAGAGCTCTTGGGGGTCACAGAGCAAGTCATACAAAGAGCAATGGCTACTCCGAGTCTATGTATGAAAGTGGAGAAAACAGCATAGACAGTGATGAGTCTCCTATTCCAACACCTGAGAGTAAGCTTGTTGGGGACAATAAGCCTTACAAAGGCAAAACCCCAATTAACCAGGACTTGGGTGCAAAGAGAAATTCAGGGTCTAAGAGAAGCAAGGGGCATGAGTGCCCATTCTGCTTCAAGGTTTTCAAGTCAGGCCAAGCTTTAGGTGGTCACAAAAGGTCCCATTTTGTTGGAGGCTGTGAAGTCAAAACCGTGGTACTTGGACAAGAGCACCAGCATCCGGAAGAAGAAGAAGAAGAAGAACATGAACTTGAAGTCCCTGAAAATGAGGCTGAAATCCCTACTCTATTTGATCTTAACCTTCCAGCTCCTATGGAGGAAGAAGCAAATGGGAATTTTGAGTACATGTCATGGTAG

Protein Analysis

507

Amino Acids

57.02

Weight (kDa)

6.3

Isoelectric Point (pI)

53.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 55 - 78 1.5e-07 C2H2-type zinc finger
zf-C2H2_6 PF13912 336 - 360 3.5e-06 C2H2-type zinc finger
zf-C2H2_6 PF13912 421 - 443 3.4e-08 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26610
fragaria_vesca FvH4_4g30350
malus_domestica MD13G1064600.v1.1 MD16G1063100.v1.1
prunus_persica Prupe.1G283600_v2.0.a1
pyrus_communis pycom13g05700 pycom16g05530
rosa_chinensis RchiOBHm_Chr4g0438641
rosa_laevigata RLG00000006345
rosa_multiflora Rmu_co8449659.1_g000001 Rmu_sc0006646.1_g000008
rosa_roxburghii Rroxscaffold_5G00379630
rosa_rugosa Rorug04G0312100
rosa_samantha Rh4AG362500 Rh4BG373900 Rh4CG387800 Rh4DG368600
rosa_wichuraiana Rw0G007120 Rw0G016670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 477
AccB7I CCANNNNNTGG 1 cut(s) 1219
AccI GTMKAC 1 cut(s) 978
AccIII TCCGGA 1 cut(s) 1384
AciI CCGC 1 cut(s) 957
AclWI GGATC 2 cut(s) 774, 787
AcsI RAATTY 5 cut(s) 383, 490, 773, 1234, 1498
AcuI CTGAAG 1 cut(s) 377
AfaI GTAC 5 cut(s) 568, 647, 686, 1362, 1508
AfiI CCNNNNNNNGG 4 cut(s) 789, 1193, 1219, 1384
AflIII ACRYGT 1 cut(s) 1509
AhlI ACTAGT 1 cut(s) 275
AjnI CCWGG 1 cut(s) 1212
AloI GAACNNNNNNTCC 2 cut(s) 1404, 1436
Alw21I GWGCWC 2 cut(s) 1051, 1377
Alw26I GTCTC 4 cut(s) 266, 314, 465, 1146
AlwI GGATC 2 cut(s) 774, 787
AlwNI CAGNNNCTG 1 cut(s) 292
Ama87I CYCGRG 1 cut(s) 136
Aor13HI TCCGGA 1 cut(s) 1384
AoxI GGCC 2 cut(s) 62, 1297
ApeKI GCWGC 3 cut(s) 590, 834, 999
ApoI RAATTY 5 cut(s) 383, 490, 773, 1234, 1498
ArsI GACNNNNNNTTYG 2 cut(s) 32, 64
AspLEI GCGC 1 cut(s) 795
AspS9I GGNCC 2 cut(s) 62, 1323
AsuC2I CCSGG 2 cut(s) 61, 784
AsuHPI GGTGA 5 cut(s) 307, 512, 535, 761, 862
AvaI CYCGRG 1 cut(s) 136
AvaII GGWCC 1 cut(s) 1323
BaeGI GKGCMC 1 cut(s) 1271
BamHI GGATCC 1 cut(s) 779
BanII GRGCYC 1 cut(s) 1051
BauI CACGAG 2 cut(s) 462, 864
BbsI GAAGAC 3 cut(s) 15, 113, 498
Bbv12I GWGCWC 2 cut(s) 1051, 1377
BbvI GCAGC 3 cut(s) 577, 846, 1011
BccI CCATC 3 cut(s) 199, 292, 725
BcgI CGANNNNNNTGC 2 cut(s) 27, 61
BciT130I CCWGG 1 cut(s) 1214
BcnI CCSGG 2 cut(s) 61, 784
BcoDI GTCTC 4 cut(s) 266, 314, 465, 1146
BcuI ACTAGT 1 cut(s) 275
BfaI CTAG 4 cut(s) 21, 30, 276, 954
BfmI CTRYAG 1 cut(s) 726
BfoI RGCGCY 1 cut(s) 796
BglI GCCNNNNNGGC 1 cut(s) 70
BisI GCNGC 4 cut(s) 591, 835, 958, 1000
BlsI GCNGC 4 cut(s) 592, 836, 959, 1001
BmcAI AGTACT 1 cut(s) 568
Bme1390I CCNGG 3 cut(s) 61, 784, 1214
Bme18I GGWCC 1 cut(s) 1323
BmeT110I CYCGRG 1 cut(s) 136
BmgT120I GGNCC 2 cut(s) 62, 1323
BmiI GGNNCC 2 cut(s) 781, 1325
BmrFI CCNGG 3 cut(s) 61, 784, 1214
BmsI GCATC 1 cut(s) 1390
BpiI GAAGAC 3 cut(s) 15, 113, 498
BpmI CTGGAG 1 cut(s) 432
BpuEI CTTGAG 1 cut(s) 934
BpuMI CCSGG 2 cut(s) 61, 784
BsaI GGTCTC 1 cut(s) 314
BsaJI CCNNGG 1 cut(s) 1356
BsaWI WCCGGW 2 cut(s) 77, 1384
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 4 cut(s) 789, 1193, 1219, 1384
Bse1I ACTGG 1 cut(s) 966
Bse3DI GCAATG 1 cut(s) 1090
BseAI TCCGGA 1 cut(s) 1384
BseBI CCWGG 1 cut(s) 1214
BseDI CCNNGG 1 cut(s) 1356
BseGI GGATG 1 cut(s) 1381
BseLI CCNNNNNNNGG 4 cut(s) 789, 1193, 1219, 1384
BseMI GCAATG 1 cut(s) 1090
BseMII CTCAG 4 cut(s) 309, 572, 584, 1149
BseNI ACTGG 1 cut(s) 966
BseRI GAGGAG 1 cut(s) 665
BseSI GKGCMC 1 cut(s) 1271
BseXI GCAGC 3 cut(s) 577, 846, 1011
BshFI GGCC 2 cut(s) 64, 1299
BsiHKAI GWGCWC 2 cut(s) 1051, 1377
BsiHKCI CYCGRG 1 cut(s) 136
BsiSI CCGG 5 cut(s) 60, 65, 78, 783, 1385
BslFI GGGAC 4 cut(s) 119, 1190, 1309, 1406
BslI CCNNNNNNNGG 4 cut(s) 789, 1193, 1219, 1384
BsmAI GTCTC 4 cut(s) 266, 314, 465, 1146
BsmFI GGGAC 4 cut(s) 119, 1190, 1309, 1406
BsnI GGCC 2 cut(s) 64, 1299
Bso31I GGTCTC 1 cut(s) 314
BsoBI CYCGRG 1 cut(s) 136
Bsp1286I GDGCHC 3 cut(s) 1051, 1271, 1377
Bsp13I TCCGGA 1 cut(s) 1384
Bsp143I GATC 3 cut(s) 124, 779, 1456
BspACI CCGC 1 cut(s) 957
BspANI GGCC 2 cut(s) 64, 1299
BspCNI CTCAG 4 cut(s) 310, 573, 583, 1150
BspEI TCCGGA 1 cut(s) 1384
BspLI GGNNCC 2 cut(s) 781, 1325
BspPI GGATC 2 cut(s) 774, 787
BspQI GCTCTTC 1 cut(s) 967
BspTNI GGTCTC 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 1090
BsrI ACTGG 1 cut(s) 966
BssECI CCNNGG 1 cut(s) 1356
BssMI GATC 3 cut(s) 124, 779, 1456
BssSI CACGAG 2 cut(s) 462, 864
Bst2BI CACGAG 2 cut(s) 462, 864
Bst2UI CCWGG 1 cut(s) 1214
Bst4CI ACNGT 4 cut(s) 661, 671, 1133, 1357
Bst6I CTCTTC 5 cut(s) 246, 255, 353, 614, 967
BstDEI CTNAG 6 cut(s) 89, 318, 570, 581, 1158, 1245
BstDSI CCRYGG 1 cut(s) 1356
BstENI CCTNNNNNAGG 1 cut(s) 1191
BstF5I GGATG 1 cut(s) 1381
BstH2I RGCGCY 1 cut(s) 796
BstHHI GCGC 1 cut(s) 795
BstKTI GATC 3 cut(s) 127, 782, 1459
BstMAI GTCTC 4 cut(s) 266, 314, 465, 1146
BstMBI GATC 3 cut(s) 124, 779, 1456
BstMWI GCNNNNNNNGC 3 cut(s) 70, 427, 1275
BstNI CCWGG 1 cut(s) 1214
BstNSI RCATGY 1 cut(s) 1513
BstSCI CCNGG 3 cut(s) 59, 782, 1212
BstSFI CTRYAG 1 cut(s) 726
BstSLI GKGCMC 1 cut(s) 1271
BstV1I GCAGC 3 cut(s) 577, 846, 1011
BstV2I GAAGAC 3 cut(s) 15, 113, 498
BstX2I RGATCY 1 cut(s) 779
BstXI CCANNNNNNTGG 1 cut(s) 1334
BstYI RGATCY 1 cut(s) 779
BsuRI GGCC 2 cut(s) 64, 1299
BtgI CCRYGG 1 cut(s) 1356
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 1 cut(s) 1381
BtsIMutI CAGTG 2 cut(s) 973, 1138
CaiI CAGNNNCTG 1 cut(s) 292
CfoI GCGC 1 cut(s) 795
Cfr13I GGNCC 2 cut(s) 62, 1323
Csp6I GTAC 5 cut(s) 567, 646, 685, 1361, 1507
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 7 cut(s) 217, 389, 695, 1262, 1409, 1510, 1515
CviQI GTAC 5 cut(s) 567, 646, 685, 1361, 1507
DdeI CTNAG 6 cut(s) 89, 318, 570, 581, 1158, 1245
DpnI GATC 3 cut(s) 126, 781, 1458
DpnII GATC 3 cut(s) 124, 779, 1456
DraI TTTAAA 1 cut(s) 903
Eam1104I CTCTTC 5 cut(s) 246, 255, 353, 614, 967
EarI CTCTTC 5 cut(s) 246, 255, 353, 614, 967
Ecl136II GAGCTC 1 cut(s) 1049
Eco24I GRGCYC 1 cut(s) 1051
Eco31I GGTCTC 1 cut(s) 314
Eco47I GGWCC 1 cut(s) 1323
Eco53kI GAGCTC 1 cut(s) 1049
Eco57I CTGAAG 1 cut(s) 377
Eco88I CYCGRG 1 cut(s) 136
EcoICRI GAGCTC 1 cut(s) 1049
EcoNI CCTNNNNNAGG 1 cut(s) 1191
EcoO109I RGGNCCY 1 cut(s) 1323
EcoRI GAATTC 2 cut(s) 490, 773
EcoRII CCWGG 1 cut(s) 1212
EcoT38I GRGCYC 1 cut(s) 1051
FaeI CATG 7 cut(s) 220, 392, 698, 1265, 1412, 1513, 1518
FalI AAGNNNNNCTT 4 cut(s) 896, 928, 920, 952
FaqI GGGAC 4 cut(s) 119, 1190, 1309, 1406
FatI CATG 7 cut(s) 216, 388, 694, 1261, 1408, 1509, 1514
FblI GTMKAC 1 cut(s) 978
Fnu4HI GCNGC 4 cut(s) 591, 835, 958, 1000
FokI GGATG 1 cut(s) 1368
FriOI GRGCYC 1 cut(s) 1051
Fsp4HI GCNGC 4 cut(s) 591, 835, 958, 1000
FspBI CTAG 4 cut(s) 21, 30, 276, 954
GlaI GCGC 1 cut(s) 794
GluI GCNGC 4 cut(s) 591, 835, 958, 1000
GsuI CTGGAG 1 cut(s) 432
HaeII RGCGCY 1 cut(s) 796
HaeIII GGCC 2 cut(s) 64, 1299
HapII CCGG 5 cut(s) 60, 65, 78, 783, 1385
HhaI GCGC 1 cut(s) 795
Hin1II CATG 7 cut(s) 220, 392, 698, 1265, 1412, 1513, 1518
Hin6I GCGC 1 cut(s) 793
HinP1I GCGC 1 cut(s) 793
HindIII AAGCTT 6 cut(s) 41, 201, 245, 873, 1166, 1302
HinfI GANTC 9 cut(s) 56, 97, 467, 503, 677, 713, 800, 1097, 1139
HpaII CCGG 5 cut(s) 60, 65, 78, 783, 1385
HphI GGTGA 5 cut(s) 307, 512, 535, 761, 862
Hpy166II GTNNAC 1 cut(s) 979
Hpy188III TCNNGA 5 cut(s) 136, 411, 464, 819, 1385
Hpy8I GTNNAC 1 cut(s) 979
HpyAV CCTTC 7 cut(s) 62, 342, 700, 816, 847, 1042, 1475
HpyCH4III ACNGT 4 cut(s) 661, 671, 1133, 1357
HpyCH4V TGCA 3 cut(s) 38, 168, 1226
HpyF10VI GCNNNNNNNGC 3 cut(s) 70, 427, 1275
HpyF3I CTNAG 6 cut(s) 89, 318, 570, 581, 1158, 1245
Hsp92II CATG 7 cut(s) 220, 392, 698, 1265, 1412, 1513, 1518
HspAI GCGC 1 cut(s) 793
Kpn2I TCCGGA 1 cut(s) 1384
Kzo9I GATC 3 cut(s) 124, 779, 1456
LguI GCTCTTC 1 cut(s) 967
LmnI GCTCC 2 cut(s) 337, 1477
Lsp1109I GCAGC 3 cut(s) 577, 846, 1011
LweI GCATC 1 cut(s) 1390
MaeI CTAG 4 cut(s) 21, 30, 276, 954
MaeIII GTNAC 7 cut(s) 25, 212, 224, 655, 1022, 1058, 1313
MalI GATC 3 cut(s) 126, 781, 1458
MboI GATC 3 cut(s) 124, 779, 1456
MflI RGATCY 1 cut(s) 779
MhlI GDGCHC 3 cut(s) 1051, 1271, 1377
MlyI GAGTC 4 cut(s) 512, 809, 1106, 1148
MmeI TCCRAC 3 cut(s) 359, 1175, 1315
MroI TCCGGA 1 cut(s) 1384
MseI TTAA 5 cut(s) 756, 813, 902, 1209, 1461
MspI CCGG 5 cut(s) 60, 65, 78, 783, 1385
MspR9I CCNGG 3 cut(s) 61, 784, 1214
MvaI CCWGG 1 cut(s) 1214
MwoI GCNNNNNNNGC 3 cut(s) 70, 427, 1275
NciI CCSGG 2 cut(s) 61, 784
NdeII GATC 3 cut(s) 124, 779, 1456
NlaIII CATG 7 cut(s) 220, 392, 698, 1265, 1412, 1513, 1518
NlaIV GGNNCC 2 cut(s) 781, 1325
NmuCI GTSAC 4 cut(s) 212, 224, 1058, 1313
NspI RCATGY 1 cut(s) 1513
PciI ACATGT 1 cut(s) 1509
PciSI GCTCTTC 1 cut(s) 967
PfeI GAWTC 5 cut(s) 56, 97, 467, 677, 713
PflMI CCANNNNNTGG 1 cut(s) 1219
PkrI GCNGC 4 cut(s) 592, 836, 959, 1001
PleI GAGTC 4 cut(s) 511, 808, 1105, 1147
PpsI GAGTC 4 cut(s) 511, 808, 1105, 1147
PpuMI RGGWCCY 1 cut(s) 1323
PscI ACATGT 1 cut(s) 1509
PsiI TTATAA 1 cut(s) 477
Psp124BI GAGCTC 1 cut(s) 1051
Psp5II RGGWCCY 1 cut(s) 1323
Psp6I CCWGG 1 cut(s) 1212
PspGI CCWGG 1 cut(s) 1212
PspN4I GGNNCC 2 cut(s) 781, 1325
PspPI GGNCC 2 cut(s) 62, 1323
PspPPI RGGWCCY 1 cut(s) 1323
PstNI CAGNNNCTG 1 cut(s) 292
PsuI RGATCY 1 cut(s) 779
RsaI GTAC 5 cut(s) 568, 647, 686, 1362, 1508
RsaNI GTAC 5 cut(s) 567, 646, 685, 1361, 1507
SacI GAGCTC 1 cut(s) 1051
SapI GCTCTTC 1 cut(s) 967
SaqAI TTAA 5 cut(s) 756, 813, 902, 1209, 1461
SatI GCNGC 4 cut(s) 591, 835, 958, 1000
Sau3AI GATC 3 cut(s) 124, 779, 1456
Sau96I GGNCC 2 cut(s) 62, 1323
ScaI AGTACT 1 cut(s) 568
SchI GAGTC 4 cut(s) 512, 809, 1106, 1148
ScrFI CCNGG 3 cut(s) 61, 784, 1214
SduI GDGCHC 3 cut(s) 1051, 1271, 1377
SfaNI GCATC 1 cut(s) 1390
SfcI CTRYAG 1 cut(s) 726
SinI GGWCC 1 cut(s) 1323
SmlI CTYRAG 1 cut(s) 913
SmoI CTYRAG 1 cut(s) 913
SpeI ACTAGT 1 cut(s) 275
SsiI CCGC 1 cut(s) 957
SspMI CTAG 4 cut(s) 21, 30, 276, 954
SstI GAGCTC 1 cut(s) 1051
StyD4I CCNGG 3 cut(s) 59, 782, 1212
TaaI ACNGT 4 cut(s) 661, 671, 1133, 1357
TaqI TCGA 1 cut(s) 711
TatI WGTACW 2 cut(s) 566, 1506
TauI GCSGC 1 cut(s) 960
TfiI GAWTC 5 cut(s) 56, 97, 467, 677, 713
Tru1I TTAA 5 cut(s) 756, 813, 902, 1209, 1461
Tru9I TTAA 5 cut(s) 756, 813, 902, 1209, 1461
TscAI CASTG 2 cut(s) 973, 1138
TseFI GTSAC 4 cut(s) 212, 224, 1058, 1313
TseI GCWGC 3 cut(s) 590, 834, 999
Tsp45I GTSAC 4 cut(s) 212, 224, 1058, 1313
TspDTI ATGAA 6 cut(s) 377, 390, 711, 894, 1122, 1425
TspRI CASTG 2 cut(s) 973, 1138
Van91I CCANNNNNTGG 1 cut(s) 1219
VpaK11BI GGWCC 1 cut(s) 1323
XagI CCTNNNNNAGG 1 cut(s) 1191
XapI RAATTY 5 cut(s) 383, 490, 773, 1234, 1498
XceI RCATGY 1 cut(s) 1513
XcmI CCANNNNNNNNNTGG 1 cut(s) 1307
XmiI GTMKAC 1 cut(s) 978
XspI CTAG 4 cut(s) 21, 30, 276, 954
ZrmI AGTACT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.