pycom13g05700

C2H2-type zinc finger

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
3751191 .. 3752891
1701 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g05700.1

Sequence Viewer

Length: 1701 bp
ATGAAAAAAAATCCAACCATGGAAGAAGAAGATCGGATCGATCAGAACCAGAAAAATAAATTTGTCTGCAGGTTTTGCAGCAAAAGATTCCGTTGTGGGAAGTCATTGGGCGGTCACATAAGAACCCATCTGAAGATTCTGAACAAAAAGCCAGTTATTGAAAAAGAAGAAGAGGAAGAAGACGATGAAATTATAGCCAAAGCTGCTGCTAGGATTGTAAAGTTTTCACCTTTTGATGGTGGGAATTCTGGGTACTCTCTCAGAGAAAATCCCAAGAAAACATGGAGGTTTTCGGATGCGGGCCCCACTTTCCAATTGCAGCAGGAGAAAGTGTGCAAAGAATGCGGCAAAGGGTTTCAGTCACTGAAAGCTCTGTGTGGTCACATGGCTTGTCACTCGGAGAAGGAGAAGCTGATGAACAAGTTTGAAGAAATCTCAGAGTTCAGTGAGAAACAGAAGCTGCTTGATGTAATGGACAGTCAGTCGGATACTGAGACATCGGCTCCTCCGAGGCAGAGAAGGATTTCCAAAAGATTGAAGCAGCAGAATCTGGATGTTTACTCTTCTGTGGCAAATGGTGGTTCTTCGTCTGGTGGTTCCGGAATTGAGCAAGAACAGCAAGAGGTTGCTCTTAGTTTGATGATGCTGTCACGCGATTCGGGTGGTAAAGGGGGTTTGAATTCGTTTGCTGAATCTTCAGACAACAACTCTGTGATTTTGGAGGCCAAATCTTCGTCTATCGATACGAGGATTAATACTAAGGAAGGTCTGTACTGTACCTATAAAGTGAGTGATGTTATGGGGATGAAGAGAGTTAGAGAGAAAAAGTTAAAGTCTGAGGAGATTGAGGTTTCTGACAATTCTGATTCTGGGTATTTTAGACATGAGCAACCTAAGAAAGTTGATTCGGATGTTTCGGTTGATGGGTTTTTTAGGAATGGTGAATTTCACAAGGGTAGAGCAGAATTTGGATCCAGAATTGTGGGATATGAGTCCTATGATGTGAAAATAAGGAAGGGTTTTCGTGTCGAATCTGAATTAGGGAAGGATGTGTCAAATGCAGAAGCTCGTAGTCCTGATCAAGTGCATAGAGATAGAGGGACTATGAAGTATACACTGAGAAAGACAACCAAGAATGCAACTTTTCACAGACCAATTGTTGATGATTCTTCCAATGTCGAACCCTGCAGAAATGCGCGAAAGAGCGGAAAATACGAGTGCTTGACATGTAACAAAACGTTCCATTCTCATAGGGCTCTTGGGGGGCACAGAGCAAGTCACACCAAGACCAATGCCTACTCTGAGTCCATGTATGAGAGTGGGGAAAACAGCATAGACACTGATCCCTCCCCTGTTCCAACACCCGAAAGCAGCAAGCTTGCTGATCAGCATTGCAGTGGGAAAAAACCAATGAATGATCAGGACTTCAGTGGCAGTGCAAAGAGAAGTTCAGGGACCAAGAAAAGCAAGGGGCATGAGTGTCCATTCTGCTTCAAGGTTTTCAAGTCAGGCCAAGCTTTGGGAGGTCACAAAAGGTCACATTTTGTTGGAGGATGTGAAGTCAAAACTGTGGTACTTGGGCAGCAAGAACCTGATCAACCCCCTCCTCATGAGGCTGAAATCACAGCACTATTTGATCTCAATCTTCCAGCTCCAATGGAGGATGAAGCAAATGACCATTTTGGGTACATGGCATGGTAG

Protein Analysis

567

Amino Acids

63.35

Weight (kDa)

8.44

Isoelectric Point (pI)

54.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 111 - 134 9.6e-07 C2H2-type zinc finger
zf-C2H2_6 PF13912 405 - 429 4.2e-06 C2H2-type zinc finger
zf-C2H2_6 PF13912 492 - 514 3.9e-08 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012139)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 60
AccB7I CCANNNNNTGG 1 cut(s) 1519
AccBSI CCGCTC 1 cut(s) 1206
AccI GTMKAC 1 cut(s) 1112
AccII CGCG 2 cut(s) 654, 1198
AccIII TCCGGA 1 cut(s) 599
AciI CCGC 4 cut(s) 111, 299, 345, 1206
AclI AACGTT 1 cut(s) 1238
AclWI GGATC 4 cut(s) 44, 966, 979, 1337
AcsI RAATTY 5 cut(s) 59, 244, 679, 944, 965
AcuI CTGAAG 3 cut(s) 152, 681, 1411
AfaI GTAC 5 cut(s) 254, 773, 778, 1575, 1688
AfiI CCNNNNNNNGG 2 cut(s) 236, 1519
AflIII ACRYGT 1 cut(s) 1226
AgsI TTSAA 6 cut(s) 161, 428, 538, 679, 1495, 1504
AhdI GACNNNNNGTC 1 cut(s) 481
AluBI AGCT 8 cut(s) 203, 371, 412, 460, 1067, 1378, 1517, 1652
AluI AGCT 8 cut(s) 203, 371, 412, 460, 1067, 1378, 1517, 1652
Alw26I GTCTC 1 cut(s) 488
AlwI GGATC 4 cut(s) 44, 966, 979, 1337
AlwNI CAGNNNCTG 3 cut(s) 364, 460, 550
Aor13HI TCCGGA 1 cut(s) 599
AoxI GGCC 3 cut(s) 301, 723, 1510
ApaI GGGCCC 1 cut(s) 305
ApeKI GCWGC 8 cut(s) 78, 203, 206, 319, 460, 541, 1371, 1582
ApoI RAATTY 5 cut(s) 59, 244, 679, 944, 965
AseI ATTAAT 1 cut(s) 753
Asp700I GAANNNNTTC 1 cut(s) 523
AspLEI GCGC 1 cut(s) 1198
AspS9I GGNCC 3 cut(s) 301, 302, 1455
AsuHPI GGTGA 2 cut(s) 219, 953
AvaII GGWCC 1 cut(s) 1455
BaeGI GKGCMC 2 cut(s) 305, 1269
BamHI GGATCC 1 cut(s) 971
BanII GRGCYC 2 cut(s) 305, 1258
BbsI GAAGAC 1 cut(s) 186
BbvI GCAGC 8 cut(s) 90, 190, 193, 331, 447, 553, 1383, 1594
BccI CCATC 3 cut(s) 135, 230, 917
BciVI GTATCC 1 cut(s) 481
BclI TGATCA 4 cut(s) 1078, 1384, 1417, 1594
BcoDI GTCTC 1 cut(s) 488
BfaI CTAG 1 cut(s) 210
BfmI CTRYAG 2 cut(s) 67, 1186
BfuAI ACCTGC 1 cut(s) 60
BfuI GTATCC 1 cut(s) 481
BisI GCNGC 9 cut(s) 79, 204, 207, 320, 346, 461, 542, 1372, 1583
BlsI GCNGC 9 cut(s) 80, 205, 208, 321, 347, 462, 543, 1373, 1584
Bme18I GGWCC 1 cut(s) 1455
BmeRI GACNNNNNGTC 1 cut(s) 481
BmgT120I GGNCC 3 cut(s) 301, 302, 1455
BmiI GGNNCC 6 cut(s) 303, 304, 504, 598, 973, 1456
BmsI GCATC 2 cut(s) 286, 633
BpiI GAAGAC 1 cut(s) 186
Bsa29I ATCGAT 2 cut(s) 39, 741
BsaBI GATNNNNATC 1 cut(s) 1641
BsaJI CCNNGG 2 cut(s) 18, 509
BsaWI WCCGGW 1 cut(s) 599
BsaXI ACNNNNNCTCC 4 cut(s) 317, 347, 487, 517
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 1519
Bse1I ACTGG 1 cut(s) 152
Bse3DI GCAATG 1 cut(s) 1390
Bse8I GATNNNNATC 1 cut(s) 1641
BseAI TCCGGA 1 cut(s) 599
BseCI ATCGAT 2 cut(s) 39, 741
BseDI CCNNGG 2 cut(s) 18, 509
BseGI GGATG 7 cut(s) 301, 559, 810, 916, 1054, 1559, 1669
BseJI GATNNNNATC 1 cut(s) 1641
BseLI CCNNNNNNNGG 2 cut(s) 236, 1519
BseMI GCAATG 1 cut(s) 1390
BseMII CTCAG 6 cut(s) 274, 450, 483, 828, 1109, 1293
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 3 cut(s) 495, 854, 1596
BseSI GKGCMC 2 cut(s) 305, 1269
BseXI GCAGC 8 cut(s) 90, 190, 193, 331, 447, 553, 1383, 1594
Bsh1236I CGCG 2 cut(s) 654, 1198
BshFI GGCC 3 cut(s) 303, 725, 1512
BshVI ATCGAT 2 cut(s) 39, 741
BsiSI CCGG 1 cut(s) 600
BslFI GGGAC 2 cut(s) 1114, 1468
BslI CCNNNNNNNGG 2 cut(s) 236, 1519
BsmAI GTCTC 1 cut(s) 488
BsmFI GGGAC 2 cut(s) 1114, 1468
BsmI GAATGC 2 cut(s) 347, 1141
BsnI GGCC 3 cut(s) 303, 725, 1512
Bsp120I GGGCCC 1 cut(s) 301
Bsp1286I GDGCHC 3 cut(s) 305, 1258, 1269
Bsp13I TCCGGA 1 cut(s) 599
Bsp19I CCATGG 1 cut(s) 18
BspACI CCGC 4 cut(s) 111, 299, 345, 1206
BspANI GGCC 3 cut(s) 303, 725, 1512
BspCNI CTCAG 6 cut(s) 273, 449, 484, 829, 1110, 1294
BspDI ATCGAT 2 cut(s) 39, 741
BspEI TCCGGA 1 cut(s) 599
BspFNI CGCG 2 cut(s) 654, 1198
BspHI TCATGA 1 cut(s) 1609
BspLI GGNNCC 6 cut(s) 303, 304, 504, 598, 973, 1456
BspMAI CTGCAG 2 cut(s) 71, 1190
BspMI ACCTGC 1 cut(s) 60
BspPI GGATC 4 cut(s) 44, 966, 979, 1337
BsrBI CCGCTC 1 cut(s) 1206
BsrDI GCAATG 1 cut(s) 1390
BsrI ACTGG 1 cut(s) 152
BssECI CCNNGG 2 cut(s) 18, 509
BssNAI GTATAC 1 cut(s) 1113
BssT1I CCWWGG 1 cut(s) 18
Bst1107I GTATAC 1 cut(s) 1113
Bst4CI ACNGT 3 cut(s) 479, 776, 1570
Bst6I CTCTTC 3 cut(s) 165, 568, 803
BstAPI GCANNNNNTGC 2 cut(s) 75, 342
BstC8I GCNNGC 3 cut(s) 301, 1376, 1380
BstDEI CTNAG 9 cut(s) 260, 436, 492, 632, 759, 837, 894, 1118, 1302
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 7 cut(s) 301, 559, 810, 916, 1054, 1559, 1669
BstFNI CGCG 2 cut(s) 654, 1198
BstHHI GCGC 1 cut(s) 1198
BstMAI GTCTC 1 cut(s) 488
BstMWI GCNNNNNNNGC 4 cut(s) 75, 203, 342, 616
BstNSI RCATGY 1 cut(s) 1230
BstSFI CTRYAG 2 cut(s) 67, 1186
BstSLI GKGCMC 2 cut(s) 305, 1269
BstUI CGCG 2 cut(s) 654, 1198
BstV1I GCAGC 8 cut(s) 90, 190, 193, 331, 447, 553, 1383, 1594
BstV2I GAAGAC 1 cut(s) 186
BstX2I RGATCY 1 cut(s) 971
BstXI CCANNNNNNTGG 1 cut(s) 982
BstYI RGATCY 1 cut(s) 971
BstZ17I GTATAC 1 cut(s) 1113
Bsu15I ATCGAT 2 cut(s) 39, 741
BsuI GTATCC 1 cut(s) 481
BsuRI GGCC 3 cut(s) 303, 725, 1512
BsuTUI ATCGAT 2 cut(s) 39, 741
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 7 cut(s) 301, 559, 810, 916, 1054, 1559, 1669
BtsI GCAGTG 2 cut(s) 1402, 1441
BtsIMutI CAGTG 7 cut(s) 362, 451, 1115, 1338, 1402, 1435, 1441
BveI ACCTGC 1 cut(s) 60
Cac8I GCNNGC 3 cut(s) 301, 1376, 1380
CaiI CAGNNNCTG 3 cut(s) 364, 460, 550
CciI TCATGA 1 cut(s) 1609
CfoI GCGC 1 cut(s) 1198
Cfr13I GGNCC 3 cut(s) 301, 302, 1455
ClaI ATCGAT 2 cut(s) 39, 741
Csp6I GTAC 5 cut(s) 253, 772, 777, 1574, 1687
CviQI GTAC 5 cut(s) 253, 772, 777, 1574, 1687
DdeI CTNAG 9 cut(s) 260, 436, 492, 632, 759, 837, 894, 1118, 1302
DriI GACNNNNNGTC 1 cut(s) 481
Eam1104I CTCTTC 3 cut(s) 165, 568, 803
Eam1105I GACNNNNNGTC 1 cut(s) 481
EarI CTCTTC 3 cut(s) 165, 568, 803
Eco130I CCWWGG 1 cut(s) 18
Eco24I GRGCYC 2 cut(s) 305, 1258
Eco47I GGWCC 1 cut(s) 1455
Eco57I CTGAAG 3 cut(s) 152, 681, 1411
EcoO109I RGGNCCY 1 cut(s) 302
EcoRI GAATTC 2 cut(s) 244, 679
EcoT14I CCWWGG 1 cut(s) 18
EcoT38I GRGCYC 2 cut(s) 305, 1258
ErhI CCWWGG 1 cut(s) 18
FaqI GGGAC 2 cut(s) 1114, 1468
FauI CCCGC 1 cut(s) 292
FbaI TGATCA 4 cut(s) 1078, 1384, 1417, 1594
FblI GTMKAC 1 cut(s) 1112
Fnu4HI GCNGC 9 cut(s) 79, 204, 207, 320, 346, 461, 542, 1372, 1583
FokI GGATG 7 cut(s) 308, 566, 817, 923, 1061, 1566, 1676
FriOI GRGCYC 2 cut(s) 305, 1258
Fsp4HI GCNGC 9 cut(s) 79, 204, 207, 320, 346, 461, 542, 1372, 1583
FspBI CTAG 1 cut(s) 210
GlaI GCGC 1 cut(s) 1197
GluI GCNGC 9 cut(s) 79, 204, 207, 320, 346, 461, 542, 1372, 1583
HaeIII GGCC 3 cut(s) 303, 725, 1512
HapII CCGG 1 cut(s) 600
HhaI GCGC 1 cut(s) 1198
Hin6I GCGC 1 cut(s) 1196
HinP1I GCGC 1 cut(s) 1196
HindIII AAGCTT 2 cut(s) 1376, 1515
HpaII CCGG 1 cut(s) 600
HphI GGTGA 2 cut(s) 219, 953
Hpy166II GTNNAC 2 cut(s) 559, 1113
Hpy188III TCNNGA 6 cut(s) 551, 600, 975, 1076, 1421, 1610
Hpy8I GTNNAC 2 cut(s) 559, 1113
HpyAV CCTTC 5 cut(s) 397, 513, 758, 1009, 1039
HpyCH4III ACNGT 3 cut(s) 479, 776, 1570
HpyCH4IV ACGT 1 cut(s) 1238
HpyF10VI GCNNNNNNNGC 4 cut(s) 75, 203, 342, 616
HpyF3I CTNAG 9 cut(s) 260, 436, 492, 632, 759, 837, 894, 1118, 1302
HpySE526I ACGT 1 cut(s) 1238
HspAI GCGC 1 cut(s) 1196
Kpn2I TCCGGA 1 cut(s) 599
Ksp22I TGATCA 4 cut(s) 1078, 1384, 1417, 1594
LmnI GCTCC 2 cut(s) 508, 1657
Lsp1109I GCAGC 8 cut(s) 90, 190, 193, 331, 447, 553, 1383, 1594
LweI GCATC 2 cut(s) 286, 633
MaeI CTAG 1 cut(s) 210
MaeII ACGT 1 cut(s) 1238
MaeIII GTNAC 9 cut(s) 113, 360, 380, 392, 648, 1229, 1277, 1526, 1536
MbiI CCGCTC 1 cut(s) 1206
MfeI CAATTG 2 cut(s) 314, 1155
MflI RGATCY 1 cut(s) 971
MhlI GDGCHC 3 cut(s) 305, 1258, 1269
MlyI GAGTC 2 cut(s) 1001, 1313
MmeI TCCRAC 4 cut(s) 38, 465, 1382, 1528
MroI TCCGGA 1 cut(s) 599
MroXI GAANNNNTTC 1 cut(s) 523
MseI TTAA 2 cut(s) 753, 830
MslI CAYNNNNRTG 1 cut(s) 1395
MspI CCGG 1 cut(s) 600
MunI CAATTG 2 cut(s) 314, 1155
Mva1269I GAATGC 2 cut(s) 347, 1141
MvnI CGCG 2 cut(s) 654, 1198
MwoI GCNNNNNNNGC 4 cut(s) 75, 203, 342, 616
NcoI CCATGG 1 cut(s) 18
NlaIV GGNNCC 6 cut(s) 303, 304, 504, 598, 973, 1456
NmuCI GTSAC 8 cut(s) 113, 360, 380, 392, 648, 1277, 1526, 1536
NspI RCATGY 1 cut(s) 1230
PagI TCATGA 1 cut(s) 1609
PciI ACATGT 1 cut(s) 1226
PcsI WCGNNNNNNNCGW 1 cut(s) 506
PctI GAATGC 2 cut(s) 347, 1141
PdmI GAANNNNTTC 1 cut(s) 523
PfeI GAWTC 9 cut(s) 87, 136, 547, 656, 692, 866, 905, 1031, 1166
PflMI CCANNNNNTGG 1 cut(s) 1519
PkrI GCNGC 9 cut(s) 80, 205, 208, 321, 347, 462, 543, 1373, 1584
PleI GAGTC 2 cut(s) 1000, 1312
PpsI GAGTC 2 cut(s) 1000, 1312
PscI ACATGT 1 cut(s) 1226
PshBI ATTAAT 1 cut(s) 753
Psp1406I AACGTT 1 cut(s) 1238
PspN4I GGNNCC 6 cut(s) 303, 304, 504, 598, 973, 1456
PspOMI GGGCCC 1 cut(s) 301
PspPI GGNCC 3 cut(s) 301, 302, 1455
PstI CTGCAG 2 cut(s) 71, 1190
PstNI CAGNNNCTG 3 cut(s) 364, 460, 550
PsuI RGATCY 1 cut(s) 971
RsaI GTAC 5 cut(s) 254, 773, 778, 1575, 1688
RsaNI GTAC 5 cut(s) 253, 772, 777, 1574, 1687
RseI CAYNNNNRTG 1 cut(s) 1395
SaqAI TTAA 2 cut(s) 753, 830
SatI GCNGC 9 cut(s) 79, 204, 207, 320, 346, 461, 542, 1372, 1583
Sau96I GGNCC 3 cut(s) 301, 302, 1455
SchI GAGTC 2 cut(s) 1001, 1313
SduI GDGCHC 3 cut(s) 305, 1258, 1269
SfaNI GCATC 2 cut(s) 286, 633
SfcI CTRYAG 2 cut(s) 67, 1186
SinI GGWCC 1 cut(s) 1455
SmiMI CAYNNNNRTG 1 cut(s) 1395
SsiI CCGC 4 cut(s) 111, 299, 345, 1206
SspMI CTAG 1 cut(s) 210
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 3 cut(s) 479, 776, 1570
TaiI ACGT 1 cut(s) 1241
TaqI TCGA 4 cut(s) 39, 741, 1029, 1179
TatI WGTACW 1 cut(s) 771
TauI GCSGC 1 cut(s) 348
TfiI GAWTC 9 cut(s) 87, 136, 547, 656, 692, 866, 905, 1031, 1166
Tru1I TTAA 2 cut(s) 753, 830
Tru9I TTAA 2 cut(s) 753, 830
TscAI CASTG 7 cut(s) 369, 451, 1122, 1345, 1402, 1435, 1441
TseFI GTSAC 8 cut(s) 113, 360, 380, 392, 648, 1277, 1526, 1536
TseI GCWGC 8 cut(s) 78, 203, 206, 319, 460, 541, 1371, 1582
Tsp45I GTSAC 8 cut(s) 113, 360, 380, 392, 648, 1277, 1526, 1536
TspDTI ATGAA 7 cut(s) 17, 201, 431, 821, 1121, 1427, 1680
TspGWI ACGGA 1 cut(s) 80
TspRI CASTG 7 cut(s) 369, 451, 1122, 1345, 1402, 1435, 1441
Van91I CCANNNNNTGG 1 cut(s) 1519
VpaK11BI GGWCC 1 cut(s) 1455
VspI ATTAAT 1 cut(s) 753
XapI RAATTY 5 cut(s) 59, 244, 679, 944, 965
XceI RCATGY 1 cut(s) 1230
XmiI GTMKAC 1 cut(s) 1112
XmnI GAANNNNTTC 1 cut(s) 523
XspI CTAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.