C2H2-type zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G26610 |
| fragaria_vesca | FvH4_4g30350 |
| malus_domestica | MD13G1064600.v1.1 MD16G1063100.v1.1 |
| prunus_persica | Prupe.1G283600_v2.0.a1 |
| pyrus_communis | pycom13g05700 pycom16g05530 |
| rosa_chinensis | RchiOBHm_Chr4g0438641 |
| rosa_laevigata | RLG00000006345 |
| rosa_multiflora | Rmu_co8449659.1_g000001 Rmu_sc0006646.1_g000008 |
| rosa_roxburghii | Rroxscaffold_5G00379630 |
| rosa_rugosa | Rorug04G0312100 |
| rosa_samantha | Rh4AG362500 Rh4BG373900 Rh4CG387800 Rh4DG368600 |
| rosa_wichuraiana | Rw0G007120 Rw0G016670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 60 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1519 |
| AccBSI | CCGCTC | 1 cut(s) | 1206 |
| AccI | GTMKAC | 1 cut(s) | 1112 |
| AccII | CGCG | 2 cut(s) | 654, 1198 |
| AccIII | TCCGGA | 1 cut(s) | 599 |
| AciI | CCGC | 4 cut(s) | 111, 299, 345, 1206 |
| AclI | AACGTT | 1 cut(s) | 1238 |
| AclWI | GGATC | 4 cut(s) | 44, 966, 979, 1337 |
| AcsI | RAATTY | 5 cut(s) | 59, 244, 679, 944, 965 |
| AcuI | CTGAAG | 3 cut(s) | 152, 681, 1411 |
| AfaI | GTAC | 5 cut(s) | 254, 773, 778, 1575, 1688 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 236, 1519 |
| AflIII | ACRYGT | 1 cut(s) | 1226 |
| AgsI | TTSAA | 6 cut(s) | 161, 428, 538, 679, 1495, 1504 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 481 |
| AluBI | AGCT | 8 cut(s) | 203, 371, 412, 460, 1067, 1378, 1517, 1652 |
| AluI | AGCT | 8 cut(s) | 203, 371, 412, 460, 1067, 1378, 1517, 1652 |
| Alw26I | GTCTC | 1 cut(s) | 488 |
| AlwI | GGATC | 4 cut(s) | 44, 966, 979, 1337 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 364, 460, 550 |
| Aor13HI | TCCGGA | 1 cut(s) | 599 |
| AoxI | GGCC | 3 cut(s) | 301, 723, 1510 |
| ApaI | GGGCCC | 1 cut(s) | 305 |
| ApeKI | GCWGC | 8 cut(s) | 78, 203, 206, 319, 460, 541, 1371, 1582 |
| ApoI | RAATTY | 5 cut(s) | 59, 244, 679, 944, 965 |
| AseI | ATTAAT | 1 cut(s) | 753 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 523 |
| AspLEI | GCGC | 1 cut(s) | 1198 |
| AspS9I | GGNCC | 3 cut(s) | 301, 302, 1455 |
| AsuHPI | GGTGA | 2 cut(s) | 219, 953 |
| AvaII | GGWCC | 1 cut(s) | 1455 |
| BaeGI | GKGCMC | 2 cut(s) | 305, 1269 |
| BamHI | GGATCC | 1 cut(s) | 971 |
| BanII | GRGCYC | 2 cut(s) | 305, 1258 |
| BbsI | GAAGAC | 1 cut(s) | 186 |
| BbvI | GCAGC | 8 cut(s) | 90, 190, 193, 331, 447, 553, 1383, 1594 |
| BccI | CCATC | 3 cut(s) | 135, 230, 917 |
| BciVI | GTATCC | 1 cut(s) | 481 |
| BclI | TGATCA | 4 cut(s) | 1078, 1384, 1417, 1594 |
| BcoDI | GTCTC | 1 cut(s) | 488 |
| BfaI | CTAG | 1 cut(s) | 210 |
| BfmI | CTRYAG | 2 cut(s) | 67, 1186 |
| BfuAI | ACCTGC | 1 cut(s) | 60 |
| BfuI | GTATCC | 1 cut(s) | 481 |
| BisI | GCNGC | 9 cut(s) | 79, 204, 207, 320, 346, 461, 542, 1372, 1583 |
| BlsI | GCNGC | 9 cut(s) | 80, 205, 208, 321, 347, 462, 543, 1373, 1584 |
| Bme18I | GGWCC | 1 cut(s) | 1455 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 481 |
| BmgT120I | GGNCC | 3 cut(s) | 301, 302, 1455 |
| BmiI | GGNNCC | 6 cut(s) | 303, 304, 504, 598, 973, 1456 |
| BmsI | GCATC | 2 cut(s) | 286, 633 |
| BpiI | GAAGAC | 1 cut(s) | 186 |
| Bsa29I | ATCGAT | 2 cut(s) | 39, 741 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1641 |
| BsaJI | CCNNGG | 2 cut(s) | 18, 509 |
| BsaWI | WCCGGW | 1 cut(s) | 599 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 317, 347, 487, 517 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 236, 1519 |
| Bse1I | ACTGG | 1 cut(s) | 152 |
| Bse3DI | GCAATG | 1 cut(s) | 1390 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1641 |
| BseAI | TCCGGA | 1 cut(s) | 599 |
| BseCI | ATCGAT | 2 cut(s) | 39, 741 |
| BseDI | CCNNGG | 2 cut(s) | 18, 509 |
| BseGI | GGATG | 7 cut(s) | 301, 559, 810, 916, 1054, 1559, 1669 |
| BseJI | GATNNNNATC | 1 cut(s) | 1641 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 236, 1519 |
| BseMI | GCAATG | 1 cut(s) | 1390 |
| BseMII | CTCAG | 6 cut(s) | 274, 450, 483, 828, 1109, 1293 |
| BseNI | ACTGG | 1 cut(s) | 152 |
| BseRI | GAGGAG | 3 cut(s) | 495, 854, 1596 |
| BseSI | GKGCMC | 2 cut(s) | 305, 1269 |
| BseXI | GCAGC | 8 cut(s) | 90, 190, 193, 331, 447, 553, 1383, 1594 |
| Bsh1236I | CGCG | 2 cut(s) | 654, 1198 |
| BshFI | GGCC | 3 cut(s) | 303, 725, 1512 |
| BshVI | ATCGAT | 2 cut(s) | 39, 741 |
| BsiSI | CCGG | 1 cut(s) | 600 |
| BslFI | GGGAC | 2 cut(s) | 1114, 1468 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 236, 1519 |
| BsmAI | GTCTC | 1 cut(s) | 488 |
| BsmFI | GGGAC | 2 cut(s) | 1114, 1468 |
| BsmI | GAATGC | 2 cut(s) | 347, 1141 |
| BsnI | GGCC | 3 cut(s) | 303, 725, 1512 |
| Bsp120I | GGGCCC | 1 cut(s) | 301 |
| Bsp1286I | GDGCHC | 3 cut(s) | 305, 1258, 1269 |
| Bsp13I | TCCGGA | 1 cut(s) | 599 |
| Bsp19I | CCATGG | 1 cut(s) | 18 |
| BspACI | CCGC | 4 cut(s) | 111, 299, 345, 1206 |
| BspANI | GGCC | 3 cut(s) | 303, 725, 1512 |
| BspCNI | CTCAG | 6 cut(s) | 273, 449, 484, 829, 1110, 1294 |
| BspDI | ATCGAT | 2 cut(s) | 39, 741 |
| BspEI | TCCGGA | 1 cut(s) | 599 |
| BspFNI | CGCG | 2 cut(s) | 654, 1198 |
| BspHI | TCATGA | 1 cut(s) | 1609 |
| BspLI | GGNNCC | 6 cut(s) | 303, 304, 504, 598, 973, 1456 |
| BspMAI | CTGCAG | 2 cut(s) | 71, 1190 |
| BspMI | ACCTGC | 1 cut(s) | 60 |
| BspPI | GGATC | 4 cut(s) | 44, 966, 979, 1337 |
| BsrBI | CCGCTC | 1 cut(s) | 1206 |
| BsrDI | GCAATG | 1 cut(s) | 1390 |
| BsrI | ACTGG | 1 cut(s) | 152 |
| BssECI | CCNNGG | 2 cut(s) | 18, 509 |
| BssNAI | GTATAC | 1 cut(s) | 1113 |
| BssT1I | CCWWGG | 1 cut(s) | 18 |
| Bst1107I | GTATAC | 1 cut(s) | 1113 |
| Bst4CI | ACNGT | 3 cut(s) | 479, 776, 1570 |
| Bst6I | CTCTTC | 3 cut(s) | 165, 568, 803 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 75, 342 |
| BstC8I | GCNNGC | 3 cut(s) | 301, 1376, 1380 |
| BstDEI | CTNAG | 9 cut(s) | 260, 436, 492, 632, 759, 837, 894, 1118, 1302 |
| BstDSI | CCRYGG | 1 cut(s) | 18 |
| BstF5I | GGATG | 7 cut(s) | 301, 559, 810, 916, 1054, 1559, 1669 |
| BstFNI | CGCG | 2 cut(s) | 654, 1198 |
| BstHHI | GCGC | 1 cut(s) | 1198 |
| BstMAI | GTCTC | 1 cut(s) | 488 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 75, 203, 342, 616 |
| BstNSI | RCATGY | 1 cut(s) | 1230 |
| BstSFI | CTRYAG | 2 cut(s) | 67, 1186 |
| BstSLI | GKGCMC | 2 cut(s) | 305, 1269 |
| BstUI | CGCG | 2 cut(s) | 654, 1198 |
| BstV1I | GCAGC | 8 cut(s) | 90, 190, 193, 331, 447, 553, 1383, 1594 |
| BstV2I | GAAGAC | 1 cut(s) | 186 |
| BstX2I | RGATCY | 1 cut(s) | 971 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 982 |
| BstYI | RGATCY | 1 cut(s) | 971 |
| BstZ17I | GTATAC | 1 cut(s) | 1113 |
| Bsu15I | ATCGAT | 2 cut(s) | 39, 741 |
| BsuI | GTATCC | 1 cut(s) | 481 |
| BsuRI | GGCC | 3 cut(s) | 303, 725, 1512 |
| BsuTUI | ATCGAT | 2 cut(s) | 39, 741 |
| BtgI | CCRYGG | 1 cut(s) | 18 |
| BtsCI | GGATG | 7 cut(s) | 301, 559, 810, 916, 1054, 1559, 1669 |
| BtsI | GCAGTG | 2 cut(s) | 1402, 1441 |
| BtsIMutI | CAGTG | 7 cut(s) | 362, 451, 1115, 1338, 1402, 1435, 1441 |
| BveI | ACCTGC | 1 cut(s) | 60 |
| Cac8I | GCNNGC | 3 cut(s) | 301, 1376, 1380 |
| CaiI | CAGNNNCTG | 3 cut(s) | 364, 460, 550 |
| CciI | TCATGA | 1 cut(s) | 1609 |
| CfoI | GCGC | 1 cut(s) | 1198 |
| Cfr13I | GGNCC | 3 cut(s) | 301, 302, 1455 |
| ClaI | ATCGAT | 2 cut(s) | 39, 741 |
| Csp6I | GTAC | 5 cut(s) | 253, 772, 777, 1574, 1687 |
| CviQI | GTAC | 5 cut(s) | 253, 772, 777, 1574, 1687 |
| DdeI | CTNAG | 9 cut(s) | 260, 436, 492, 632, 759, 837, 894, 1118, 1302 |
| DriI | GACNNNNNGTC | 1 cut(s) | 481 |
| Eam1104I | CTCTTC | 3 cut(s) | 165, 568, 803 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 481 |
| EarI | CTCTTC | 3 cut(s) | 165, 568, 803 |
| Eco130I | CCWWGG | 1 cut(s) | 18 |
| Eco24I | GRGCYC | 2 cut(s) | 305, 1258 |
| Eco47I | GGWCC | 1 cut(s) | 1455 |
| Eco57I | CTGAAG | 3 cut(s) | 152, 681, 1411 |
| EcoO109I | RGGNCCY | 1 cut(s) | 302 |
| EcoRI | GAATTC | 2 cut(s) | 244, 679 |
| EcoT14I | CCWWGG | 1 cut(s) | 18 |
| EcoT38I | GRGCYC | 2 cut(s) | 305, 1258 |
| ErhI | CCWWGG | 1 cut(s) | 18 |
| FaqI | GGGAC | 2 cut(s) | 1114, 1468 |
| FauI | CCCGC | 1 cut(s) | 292 |
| FbaI | TGATCA | 4 cut(s) | 1078, 1384, 1417, 1594 |
| FblI | GTMKAC | 1 cut(s) | 1112 |
| Fnu4HI | GCNGC | 9 cut(s) | 79, 204, 207, 320, 346, 461, 542, 1372, 1583 |
| FokI | GGATG | 7 cut(s) | 308, 566, 817, 923, 1061, 1566, 1676 |
| FriOI | GRGCYC | 2 cut(s) | 305, 1258 |
| Fsp4HI | GCNGC | 9 cut(s) | 79, 204, 207, 320, 346, 461, 542, 1372, 1583 |
| FspBI | CTAG | 1 cut(s) | 210 |
| GlaI | GCGC | 1 cut(s) | 1197 |
| GluI | GCNGC | 9 cut(s) | 79, 204, 207, 320, 346, 461, 542, 1372, 1583 |
| HaeIII | GGCC | 3 cut(s) | 303, 725, 1512 |
| HapII | CCGG | 1 cut(s) | 600 |
| HhaI | GCGC | 1 cut(s) | 1198 |
| Hin6I | GCGC | 1 cut(s) | 1196 |
| HinP1I | GCGC | 1 cut(s) | 1196 |
| HindIII | AAGCTT | 2 cut(s) | 1376, 1515 |
| HpaII | CCGG | 1 cut(s) | 600 |
| HphI | GGTGA | 2 cut(s) | 219, 953 |
| Hpy166II | GTNNAC | 2 cut(s) | 559, 1113 |
| Hpy188III | TCNNGA | 6 cut(s) | 551, 600, 975, 1076, 1421, 1610 |
| Hpy8I | GTNNAC | 2 cut(s) | 559, 1113 |
| HpyAV | CCTTC | 5 cut(s) | 397, 513, 758, 1009, 1039 |
| HpyCH4III | ACNGT | 3 cut(s) | 479, 776, 1570 |
| HpyCH4IV | ACGT | 1 cut(s) | 1238 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 75, 203, 342, 616 |
| HpyF3I | CTNAG | 9 cut(s) | 260, 436, 492, 632, 759, 837, 894, 1118, 1302 |
| HpySE526I | ACGT | 1 cut(s) | 1238 |
| HspAI | GCGC | 1 cut(s) | 1196 |
| Kpn2I | TCCGGA | 1 cut(s) | 599 |
| Ksp22I | TGATCA | 4 cut(s) | 1078, 1384, 1417, 1594 |
| LmnI | GCTCC | 2 cut(s) | 508, 1657 |
| Lsp1109I | GCAGC | 8 cut(s) | 90, 190, 193, 331, 447, 553, 1383, 1594 |
| LweI | GCATC | 2 cut(s) | 286, 633 |
| MaeI | CTAG | 1 cut(s) | 210 |
| MaeII | ACGT | 1 cut(s) | 1238 |
| MaeIII | GTNAC | 9 cut(s) | 113, 360, 380, 392, 648, 1229, 1277, 1526, 1536 |
| MbiI | CCGCTC | 1 cut(s) | 1206 |
| MfeI | CAATTG | 2 cut(s) | 314, 1155 |
| MflI | RGATCY | 1 cut(s) | 971 |
| MhlI | GDGCHC | 3 cut(s) | 305, 1258, 1269 |
| MlyI | GAGTC | 2 cut(s) | 1001, 1313 |
| MmeI | TCCRAC | 4 cut(s) | 38, 465, 1382, 1528 |
| MroI | TCCGGA | 1 cut(s) | 599 |
| MroXI | GAANNNNTTC | 1 cut(s) | 523 |
| MseI | TTAA | 2 cut(s) | 753, 830 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1395 |
| MspI | CCGG | 1 cut(s) | 600 |
| MunI | CAATTG | 2 cut(s) | 314, 1155 |
| Mva1269I | GAATGC | 2 cut(s) | 347, 1141 |
| MvnI | CGCG | 2 cut(s) | 654, 1198 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 75, 203, 342, 616 |
| NcoI | CCATGG | 1 cut(s) | 18 |
| NlaIV | GGNNCC | 6 cut(s) | 303, 304, 504, 598, 973, 1456 |
| NmuCI | GTSAC | 8 cut(s) | 113, 360, 380, 392, 648, 1277, 1526, 1536 |
| NspI | RCATGY | 1 cut(s) | 1230 |
| PagI | TCATGA | 1 cut(s) | 1609 |
| PciI | ACATGT | 1 cut(s) | 1226 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 506 |
| PctI | GAATGC | 2 cut(s) | 347, 1141 |
| PdmI | GAANNNNTTC | 1 cut(s) | 523 |
| PfeI | GAWTC | 9 cut(s) | 87, 136, 547, 656, 692, 866, 905, 1031, 1166 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1519 |
| PkrI | GCNGC | 9 cut(s) | 80, 205, 208, 321, 347, 462, 543, 1373, 1584 |
| PleI | GAGTC | 2 cut(s) | 1000, 1312 |
| PpsI | GAGTC | 2 cut(s) | 1000, 1312 |
| PscI | ACATGT | 1 cut(s) | 1226 |
| PshBI | ATTAAT | 1 cut(s) | 753 |
| Psp1406I | AACGTT | 1 cut(s) | 1238 |
| PspN4I | GGNNCC | 6 cut(s) | 303, 304, 504, 598, 973, 1456 |
| PspOMI | GGGCCC | 1 cut(s) | 301 |
| PspPI | GGNCC | 3 cut(s) | 301, 302, 1455 |
| PstI | CTGCAG | 2 cut(s) | 71, 1190 |
| PstNI | CAGNNNCTG | 3 cut(s) | 364, 460, 550 |
| PsuI | RGATCY | 1 cut(s) | 971 |
| RsaI | GTAC | 5 cut(s) | 254, 773, 778, 1575, 1688 |
| RsaNI | GTAC | 5 cut(s) | 253, 772, 777, 1574, 1687 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1395 |
| SaqAI | TTAA | 2 cut(s) | 753, 830 |
| SatI | GCNGC | 9 cut(s) | 79, 204, 207, 320, 346, 461, 542, 1372, 1583 |
| Sau96I | GGNCC | 3 cut(s) | 301, 302, 1455 |
| SchI | GAGTC | 2 cut(s) | 1001, 1313 |
| SduI | GDGCHC | 3 cut(s) | 305, 1258, 1269 |
| SfaNI | GCATC | 2 cut(s) | 286, 633 |
| SfcI | CTRYAG | 2 cut(s) | 67, 1186 |
| SinI | GGWCC | 1 cut(s) | 1455 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1395 |
| SsiI | CCGC | 4 cut(s) | 111, 299, 345, 1206 |
| SspMI | CTAG | 1 cut(s) | 210 |
| StyI | CCWWGG | 1 cut(s) | 18 |
| TaaI | ACNGT | 3 cut(s) | 479, 776, 1570 |
| TaiI | ACGT | 1 cut(s) | 1241 |
| TaqI | TCGA | 4 cut(s) | 39, 741, 1029, 1179 |
| TatI | WGTACW | 1 cut(s) | 771 |
| TauI | GCSGC | 1 cut(s) | 348 |
| TfiI | GAWTC | 9 cut(s) | 87, 136, 547, 656, 692, 866, 905, 1031, 1166 |
| Tru1I | TTAA | 2 cut(s) | 753, 830 |
| Tru9I | TTAA | 2 cut(s) | 753, 830 |
| TscAI | CASTG | 7 cut(s) | 369, 451, 1122, 1345, 1402, 1435, 1441 |
| TseFI | GTSAC | 8 cut(s) | 113, 360, 380, 392, 648, 1277, 1526, 1536 |
| TseI | GCWGC | 8 cut(s) | 78, 203, 206, 319, 460, 541, 1371, 1582 |
| Tsp45I | GTSAC | 8 cut(s) | 113, 360, 380, 392, 648, 1277, 1526, 1536 |
| TspDTI | ATGAA | 7 cut(s) | 17, 201, 431, 821, 1121, 1427, 1680 |
| TspGWI | ACGGA | 1 cut(s) | 80 |
| TspRI | CASTG | 7 cut(s) | 369, 451, 1122, 1345, 1402, 1435, 1441 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1519 |
| VpaK11BI | GGWCC | 1 cut(s) | 1455 |
| VspI | ATTAAT | 1 cut(s) | 753 |
| XapI | RAATTY | 5 cut(s) | 59, 244, 679, 944, 965 |
| XceI | RCATGY | 1 cut(s) | 1230 |
| XmiI | GTMKAC | 1 cut(s) | 1112 |
| XmnI | GAANNNNTTC | 1 cut(s) | 523 |
| XspI | CTAG | 1 cut(s) | 210 |