C2H2-type zinc finger
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G26610 |
| fragaria_vesca | FvH4_4g30350 |
| malus_domestica | MD13G1064600.v1.1 MD16G1063100.v1.1 |
| prunus_persica | Prupe.1G283600_v2.0.a1 |
| pyrus_communis | pycom13g05700 pycom16g05530 |
| rosa_chinensis | RchiOBHm_Chr4g0438641 |
| rosa_laevigata | RLG00000006345 |
| rosa_multiflora | Rmu_co8449659.1_g000001 Rmu_sc0006646.1_g000008 |
| rosa_roxburghii | Rroxscaffold_5G00379630 |
| rosa_rugosa | Rorug04G0312100 |
| rosa_samantha | Rh4AG362500 Rh4BG373900 Rh4CG387800 Rh4DG368600 |
| rosa_wichuraiana | Rw0G007120 Rw0G016670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 12 |
| AciI | CCGC | 1 cut(s) | 10 |
| AcsI | RAATTY | 2 cut(s) | 4, 61 |
| AfaI | GTAC | 1 cut(s) | 70 |
| AluBI | AGCT | 1 cut(s) | 84 |
| AluI | AGCT | 1 cut(s) | 84 |
| Alw26I | GTCTC | 1 cut(s) | 129 |
| ApoI | RAATTY | 2 cut(s) | 4, 61 |
| BbsI | GAAGAC | 1 cut(s) | 140 |
| BcoDI | GTCTC | 1 cut(s) | 129 |
| BmsI | GCATC | 1 cut(s) | 40 |
| BpiI | GAAGAC | 1 cut(s) | 140 |
| BsaI | GGTCTC | 1 cut(s) | 129 |
| BslFI | GGGAC | 1 cut(s) | 110 |
| BsmAI | GTCTC | 1 cut(s) | 129 |
| BsmFI | GGGAC | 1 cut(s) | 110 |
| Bso31I | GGTCTC | 1 cut(s) | 129 |
| BspACI | CCGC | 1 cut(s) | 10 |
| BspTNI | GGTCTC | 1 cut(s) | 129 |
| BsrBI | CCGCTC | 1 cut(s) | 12 |
| BstMAI | GTCTC | 1 cut(s) | 129 |
| BstV2I | GAAGAC | 1 cut(s) | 140 |
| Csp6I | GTAC | 1 cut(s) | 69 |
| CviJI | RGCY | 1 cut(s) | 84 |
| CviKI_1 | RGCY | 1 cut(s) | 84 |
| CviQI | GTAC | 1 cut(s) | 69 |
| Eco31I | GGTCTC | 1 cut(s) | 129 |
| EcoT22I | ATGCAT | 1 cut(s) | 55 |
| FaiI | YATR | 2 cut(s) | 23, 116 |
| FaqI | GGGAC | 1 cut(s) | 110 |
| HindIII | AAGCTT | 1 cut(s) | 82 |
| Hpy188I | TCNGA | 1 cut(s) | 153 |
| Hpy188III | TCNNGA | 1 cut(s) | 29 |
| HpyAV | CCTTC | 1 cut(s) | 26 |
| HpyCH4V | TGCA | 2 cut(s) | 53, 122 |
| LmnI | GCTCC | 1 cut(s) | 109 |
| LweI | GCATC | 1 cut(s) | 40 |
| MaeIII | GTNAC | 1 cut(s) | 128 |
| MbiI | CCGCTC | 1 cut(s) | 12 |
| MboII | GAAGA | 1 cut(s) | 140 |
| MluCI | AATT | 3 cut(s) | 4, 61, 73 |
| Mph1103I | ATGCAT | 1 cut(s) | 55 |
| NsiI | ATGCAT | 1 cut(s) | 55 |
| RsaI | GTAC | 1 cut(s) | 70 |
| RsaNI | GTAC | 1 cut(s) | 69 |
| SetI | ASST | 2 cut(s) | 37, 86 |
| SfaNI | GCATC | 1 cut(s) | 40 |
| SgeI | CNNG | 6 cut(s) | 41, 53, 93, 97, 131, 154 |
| Sse9I | AATT | 3 cut(s) | 4, 61, 73 |
| SsiI | CCGC | 1 cut(s) | 10 |
| TaqI | TCGA | 1 cut(s) | 28 |
| TasI | AATT | 3 cut(s) | 4, 61, 73 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 1 cut(s) | 149 |
| XapI | RAATTY | 2 cut(s) | 4, 61 |
| Zsp2I | ATGCAT | 1 cut(s) | 55 |