Rh4AG362500

C2H2-type zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0012139
Physical Location & Seq
Forward (+)
67127869 .. 67130348
2480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG362500.1

Sequence Viewer

Length: 1650 bp
ATGGAAGAGGATCAGAACCAGCACAAGAAATTCGTGTGCAAGTTTTGCAACAGGAGATTCCAATGTGGGAAGTCACTTGGTGGTCACATCAGGACCCATTTGAACAAGAAACCAACTCGGGAAAAAGAACAGGAGATGGAAGAAGACGAGTTTGCTAGAGTTACTAGGACTGCAAAGCTTTTGTCTTTGGATTCCGGGCCGGAAGGGCAATCCGGTTATCGTCTCAGGGAGAATCCCAAGAAGACTTGGAGGTTTGCCGATCACAAAGTCCCGAGTTTTCAATTCCAGCAGGAGAAAGTGTGCAAGGAATGTGGGAAAGGTTTTCCATCGCTGAAAGCTTTGTGTGGTCACATGGCTTGTCACTCGGACAAGGAGAGAAAGCTTGAAGAGTTTTCGGAGACTAGTGAGAAGCAGAAGCTGGTGATGGATAGTCAGTCTGATACTGAGACCTCTTCAGCTCCAACAAAGCAGAGAAGGGTGCTGAAGAGAATGAGGGAGAACAATTTTGAAGTTCATCATGGTGGTTGTTCATCTGGTTCTGGAGTTGAGCAAGAACAGCAGGAAGTGGCTATTAGTTTGATGATGTTGTCTCGTGATTCGGGTTATAAAGGGGGTCTGAATTCGTTTGGTGAGTCTTCGGATAACAACTCGGTGATTCTAGAGGGCAAGTCATCTTCTATTGATATGAGAATTAGTACTAAGAGAGGTCTGAGTTATGCTGCTAAAGTGAATGATGTTATGGACTTGAAGAGAGCAAGAGAGAAAAAGTTGAACTATGAGGAGGTTACTGTTTCTGACAATTCTGATTCTGGGTACTATATACATGAACCCAAGAAGGTTGAATCAGATGTTTCTGTAGATGGGTTTGTGAGGAATGGTGAGTTTAAGAAGTATAGAGCTGAATTCGGATCCGGGTTTGGGCGCTATGAGTCCTATGATGTTAAATCAAGAAGGGCGTTTAGCAGCAAGTCTGAAATGGTGAAGAAATTGCCACGAGAAGAAGCTTATGAACAAGGAGATAGGGGTTCTTTAAAGTATGCCTTGAGAAAATCCACCAAGAATGGCTTTCACAGACCATTTACTAGCGGCTCTTCCAGTGTAGAAGCCTACAAGAATGTTAGAAAGAGCAGCAAATATGAGTGCTTGACTTGTAACAAGACCTTCCATTCTCATAGAGCTCTTGGGGGTCACAGAGCAAGTCATACAAAGAGCAATGGCTACTCCGAGTCTATGTATGAAAGTGGAGAAAACAGCGTAGACAGTGATGAGTCTCCTATTCCAACACCTGAGAGTCAGCTTGTTGAGCACAATAAGCCTTACAAAGGCAAAACCCCAATTAACCAGGACTTGGGTGCAAAGAGAAATTCAGGGTCTAAGAGAAGCAAGGGGCATGAGTGCCCATTCTGCTTCAAGGTTTTCAAGTCGGGCCAAGCTTTAGGTGGTCACAAAAGGTCCCATTTTGTTGGAGGCTGTGAAGTCAAAACTGTGGTACTTGGACAAGAGCACCAGCATCCGGAAGAAGAAGAAGAAGAAGAACATGAACTTGAAGTCCCTGAAAATGAGGCTGAAATCCCTACTCTATTTGATCTTAACCTTCCTGCTCCTATGGAGGAAGAAGCAAATGGGAATTTTGAGTACATGTCATGGTAG

Protein Analysis

549

Amino Acids

62.24

Weight (kDa)

7.87

Isoelectric Point (pI)

53.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 100 - 123 1.7e-07 C2H2-type zinc finger
zf-C2H2_6 PF13912 379 - 403 3.9e-06 C2H2-type zinc finger
zf-C2H2_6 PF13912 464 - 486 3.7e-08 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26610
fragaria_vesca FvH4_4g30350
malus_domestica MD13G1064600.v1.1 MD16G1063100.v1.1
prunus_persica Prupe.1G283600_v2.0.a1
pyrus_communis pycom13g05700 pycom16g05530
rosa_chinensis RchiOBHm_Chr4g0438641
rosa_laevigata RLG00000006345
rosa_multiflora Rmu_co8449659.1_g000001 Rmu_sc0006646.1_g000008
rosa_roxburghii Rroxscaffold_5G00379630
rosa_rugosa Rorug04G0312100
rosa_samantha Rh4AG362500 Rh4BG373900 Rh4CG387800 Rh4DG368600
rosa_wichuraiana Rw0G007120 Rw0G016670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 606
AccB7I CCANNNNNTGG 1 cut(s) 1348
AccI GTMKAC 1 cut(s) 1257
AccIII TCCGGA 1 cut(s) 1513
AciI CCGC 1 cut(s) 1086
AclWI GGATC 3 cut(s) 18, 903, 916
AcsI RAATTY 5 cut(s) 29, 619, 902, 1363, 1627
AcuI CTGAAG 2 cut(s) 438, 503
AdeI CACNNNGTG 1 cut(s) 80
AfaI GTAC 4 cut(s) 697, 815, 1491, 1637
AfiI CCNNNNNNNGG 4 cut(s) 918, 1322, 1348, 1513
AflIII ACRYGT 1 cut(s) 1638
AhlI ACTAGT 1 cut(s) 401
AjnI CCWGG 1 cut(s) 1341
AloI GAACNNNNNNTCC 2 cut(s) 1533, 1565
Alw21I GWGCWC 3 cut(s) 1180, 1308, 1506
Alw26I GTCTC 5 cut(s) 227, 392, 440, 594, 1275
AlwI GGATC 3 cut(s) 18, 903, 916
AlwNI CAGNNNCTG 1 cut(s) 418
Ama87I CYCGRG 2 cut(s) 117, 271
Aor13HI TCCGGA 1 cut(s) 1513
AoxI GGCC 2 cut(s) 197, 1426
ApeKI GCWGC 3 cut(s) 719, 963, 1128
ApoI RAATTY 5 cut(s) 29, 619, 902, 1363, 1627
ArsI GACNNNNNNTTYG 2 cut(s) 167, 199
AspLEI GCGC 1 cut(s) 924
AspS9I GGNCC 4 cut(s) 93, 197, 1426, 1452
AsuC2I CCSGG 2 cut(s) 196, 913
AsuHPI GGTGA 5 cut(s) 433, 641, 664, 890, 991
AvaI CYCGRG 2 cut(s) 117, 271
AvaII GGWCC 2 cut(s) 93, 1452
BaeGI GKGCMC 1 cut(s) 1400
BamHI GGATCC 1 cut(s) 908
BanII GRGCYC 1 cut(s) 1180
BauI CACGAG 2 cut(s) 591, 993
BbsI GAAGAC 3 cut(s) 150, 248, 627
Bbv12I GWGCWC 3 cut(s) 1180, 1308, 1506
BbvI GCAGC 3 cut(s) 706, 975, 1140
BccI CCATC 4 cut(s) 130, 334, 418, 854
BciT130I CCWGG 1 cut(s) 1343
BcnI CCSGG 2 cut(s) 196, 913
BcoDI GTCTC 5 cut(s) 227, 392, 440, 594, 1275
BcuI ACTAGT 1 cut(s) 401
BfaI CTAG 5 cut(s) 156, 165, 402, 659, 1083
BfmI CTRYAG 1 cut(s) 855
BfoI RGCGCY 1 cut(s) 925
BglI GCCNNNNNGGC 1 cut(s) 205
BisI GCNGC 4 cut(s) 720, 964, 1087, 1129
BlsI GCNGC 4 cut(s) 721, 965, 1088, 1130
BmcAI AGTACT 1 cut(s) 697
Bme1390I CCNGG 3 cut(s) 196, 913, 1343
Bme18I GGWCC 2 cut(s) 93, 1452
BmeT110I CYCGRG 2 cut(s) 117, 271
BmgT120I GGNCC 4 cut(s) 93, 197, 1426, 1452
BmiI GGNNCC 3 cut(s) 95, 910, 1454
BmrFI CCNGG 3 cut(s) 196, 913, 1343
BmsI GCATC 1 cut(s) 1519
BpiI GAAGAC 3 cut(s) 150, 248, 627
BpmI CTGGAG 1 cut(s) 561
BpuEI CTTGAG 1 cut(s) 1063
BpuMI CCSGG 2 cut(s) 196, 913
BsaI GGTCTC 1 cut(s) 440
BsaWI WCCGGW 2 cut(s) 212, 1513
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 4 cut(s) 918, 1322, 1348, 1513
Bse1I ACTGG 1 cut(s) 1095
Bse3DI GCAATG 1 cut(s) 1219
BseAI TCCGGA 1 cut(s) 1513
BseBI CCWGG 1 cut(s) 1343
BseGI GGATG 1 cut(s) 1510
BseLI CCNNNNNNNGG 4 cut(s) 918, 1322, 1348, 1513
BseMI GCAATG 1 cut(s) 1219
BseMII CTCAG 4 cut(s) 238, 435, 701, 1278
BseNI ACTGG 1 cut(s) 1095
BseRI GAGGAG 1 cut(s) 794
BseSI GKGCMC 1 cut(s) 1400
BseXI GCAGC 3 cut(s) 706, 975, 1140
BshFI GGCC 2 cut(s) 199, 1428
BsiHKAI GWGCWC 3 cut(s) 1180, 1308, 1506
BsiHKCI CYCGRG 2 cut(s) 117, 271
BsiSI CCGG 5 cut(s) 195, 200, 213, 912, 1514
BslFI GGGAC 3 cut(s) 254, 1438, 1535
BslI CCNNNNNNNGG 4 cut(s) 918, 1322, 1348, 1513
BsmAI GTCTC 5 cut(s) 227, 392, 440, 594, 1275
BsmBI CGTCTC 1 cut(s) 227
BsmFI GGGAC 3 cut(s) 254, 1438, 1535
BsnI GGCC 2 cut(s) 199, 1428
Bso31I GGTCTC 1 cut(s) 440
BsoBI CYCGRG 2 cut(s) 117, 271
Bsp1286I GDGCHC 4 cut(s) 1180, 1308, 1400, 1506
Bsp13I TCCGGA 1 cut(s) 1513
Bsp143I GATC 4 cut(s) 10, 259, 908, 1585
BspACI CCGC 1 cut(s) 1086
BspANI GGCC 2 cut(s) 199, 1428
BspCNI CTCAG 4 cut(s) 237, 436, 702, 1279
BspEI TCCGGA 1 cut(s) 1513
BspLI GGNNCC 3 cut(s) 95, 910, 1454
BspPI GGATC 3 cut(s) 18, 903, 916
BspQI GCTCTTC 1 cut(s) 1096
BspTNI GGTCTC 1 cut(s) 440
BsrDI GCAATG 1 cut(s) 1219
BsrI ACTGG 1 cut(s) 1095
BssMI GATC 4 cut(s) 10, 259, 908, 1585
BssSI CACGAG 2 cut(s) 591, 993
Bst2BI CACGAG 2 cut(s) 591, 993
Bst2UI CCWGG 1 cut(s) 1343
Bst4CI ACNGT 3 cut(s) 790, 1262, 1486
Bst6I CTCTTC 5 cut(s) 381, 457, 479, 743, 1096
BstAPI GCANNNNNTGC 1 cut(s) 45
BstDEI CTNAG 6 cut(s) 224, 444, 699, 710, 1287, 1374
BstENI CCTNNNNNAGG 1 cut(s) 1320
BstF5I GGATG 1 cut(s) 1510
BstH2I RGCGCY 1 cut(s) 925
BstHHI GCGC 1 cut(s) 924
BstKTI GATC 4 cut(s) 13, 262, 911, 1588
BstMAI GTCTC 5 cut(s) 227, 392, 440, 594, 1275
BstMBI GATC 4 cut(s) 10, 259, 908, 1585
BstMWI GCNNNNNNNGC 6 cut(s) 45, 205, 556, 1303, 1312, 1404
BstNI CCWGG 1 cut(s) 1343
BstNSI RCATGY 1 cut(s) 1642
BstSCI CCNGG 3 cut(s) 194, 911, 1341
BstSFI CTRYAG 1 cut(s) 855
BstSLI GKGCMC 1 cut(s) 1400
BstV1I GCAGC 3 cut(s) 706, 975, 1140
BstV2I GAAGAC 3 cut(s) 150, 248, 627
BstX2I RGATCY 1 cut(s) 908
BstXI CCANNNNNNTGG 1 cut(s) 1463
BstYI RGATCY 1 cut(s) 908
BsuRI GGCC 2 cut(s) 199, 1428
BtgZI GCGATG 1 cut(s) 312
BtsCI GGATG 1 cut(s) 1510
BtsIMutI CAGTG 2 cut(s) 1102, 1267
CaiI CAGNNNCTG 1 cut(s) 418
CfoI GCGC 1 cut(s) 924
Cfr13I GGNCC 4 cut(s) 93, 197, 1426, 1452
Csp6I GTAC 4 cut(s) 696, 814, 1490, 1636
CspCI CAANNNNNGTGG 2 cut(s) 292, 327
CviAII CATG 7 cut(s) 352, 518, 824, 1391, 1538, 1639, 1644
CviQI GTAC 4 cut(s) 696, 814, 1490, 1636
DdeI CTNAG 6 cut(s) 224, 444, 699, 710, 1287, 1374
DpnI GATC 4 cut(s) 12, 261, 910, 1587
DpnII GATC 4 cut(s) 10, 259, 908, 1585
DraI TTTAAA 1 cut(s) 1032
DraIII CACNNNGTG 1 cut(s) 80
Eam1104I CTCTTC 5 cut(s) 381, 457, 479, 743, 1096
EarI CTCTTC 5 cut(s) 381, 457, 479, 743, 1096
Ecl136II GAGCTC 1 cut(s) 1178
Eco24I GRGCYC 1 cut(s) 1180
Eco31I GGTCTC 1 cut(s) 440
Eco47I GGWCC 2 cut(s) 93, 1452
Eco53kI GAGCTC 1 cut(s) 1178
Eco57I CTGAAG 2 cut(s) 438, 503
Eco88I CYCGRG 2 cut(s) 117, 271
EcoICRI GAGCTC 1 cut(s) 1178
EcoNI CCTNNNNNAGG 1 cut(s) 1320
EcoO109I RGGNCCY 2 cut(s) 93, 1452
EcoRI GAATTC 2 cut(s) 619, 902
EcoRII CCWGG 1 cut(s) 1341
EcoT38I GRGCYC 1 cut(s) 1180
Esp3I CGTCTC 1 cut(s) 227
FaeI CATG 7 cut(s) 355, 521, 827, 1394, 1541, 1642, 1647
FalI AAGNNNNNCTT 4 cut(s) 1025, 1057, 1049, 1081
FaqI GGGAC 3 cut(s) 254, 1438, 1535
FatI CATG 7 cut(s) 351, 517, 823, 1390, 1537, 1638, 1643
FblI GTMKAC 1 cut(s) 1257
Fnu4HI GCNGC 4 cut(s) 720, 964, 1087, 1129
FokI GGATG 1 cut(s) 1497
FriOI GRGCYC 1 cut(s) 1180
Fsp4HI GCNGC 4 cut(s) 720, 964, 1087, 1129
FspBI CTAG 5 cut(s) 156, 165, 402, 659, 1083
GlaI GCGC 1 cut(s) 923
GluI GCNGC 4 cut(s) 720, 964, 1087, 1129
GsuI CTGGAG 1 cut(s) 561
HaeII RGCGCY 1 cut(s) 925
HaeIII GGCC 2 cut(s) 199, 1428
HapII CCGG 5 cut(s) 195, 200, 213, 912, 1514
HhaI GCGC 1 cut(s) 924
Hin1II CATG 7 cut(s) 355, 521, 827, 1394, 1541, 1642, 1647
Hin6I GCGC 1 cut(s) 922
HinP1I GCGC 1 cut(s) 922
HindIII AAGCTT 5 cut(s) 176, 336, 380, 1002, 1431
HpaII CCGG 5 cut(s) 195, 200, 213, 912, 1514
HphI GGTGA 5 cut(s) 433, 641, 664, 890, 991
Hpy166II GTNNAC 1 cut(s) 1258
Hpy188III TCNNGA 8 cut(s) 91, 119, 271, 540, 593, 659, 948, 1514
Hpy8I GTNNAC 1 cut(s) 1258
HpyAV CCTTC 6 cut(s) 197, 468, 829, 945, 1171, 1604
HpyCH4III ACNGT 3 cut(s) 790, 1262, 1486
HpyCH4V TGCA 5 cut(s) 39, 48, 173, 303, 1355
HpyF10VI GCNNNNNNNGC 6 cut(s) 45, 205, 556, 1303, 1312, 1404
HpyF3I CTNAG 6 cut(s) 224, 444, 699, 710, 1287, 1374
Hsp92II CATG 7 cut(s) 355, 521, 827, 1394, 1541, 1642, 1647
HspAI GCGC 1 cut(s) 922
Kpn2I TCCGGA 1 cut(s) 1513
Kzo9I GATC 4 cut(s) 10, 259, 908, 1585
LguI GCTCTTC 1 cut(s) 1096
LmnI GCTCC 2 cut(s) 463, 1606
Lsp1109I GCAGC 3 cut(s) 706, 975, 1140
LweI GCATC 1 cut(s) 1519
MaeI CTAG 5 cut(s) 156, 165, 402, 659, 1083
MaeIII GTNAC 9 cut(s) 72, 83, 160, 347, 359, 784, 1151, 1187, 1442
MalI GATC 4 cut(s) 12, 261, 910, 1587
MboI GATC 4 cut(s) 10, 259, 908, 1585
MflI RGATCY 1 cut(s) 908
MhlI GDGCHC 4 cut(s) 1180, 1308, 1400, 1506
MlyI GAGTC 5 cut(s) 641, 938, 1235, 1277, 1300
MmeI TCCRAC 3 cut(s) 485, 1304, 1444
MroI TCCGGA 1 cut(s) 1513
MseI TTAA 5 cut(s) 885, 942, 1031, 1338, 1590
MslI CAYNNNNRTG 1 cut(s) 519
MspI CCGG 5 cut(s) 195, 200, 213, 912, 1514
MspR9I CCNGG 3 cut(s) 196, 913, 1343
MvaI CCWGG 1 cut(s) 1343
MwoI GCNNNNNNNGC 6 cut(s) 45, 205, 556, 1303, 1312, 1404
NciI CCSGG 2 cut(s) 196, 913
NdeII GATC 4 cut(s) 10, 259, 908, 1585
NlaIII CATG 7 cut(s) 355, 521, 827, 1394, 1541, 1642, 1647
NlaIV GGNNCC 3 cut(s) 95, 910, 1454
NmuCI GTSAC 6 cut(s) 72, 83, 347, 359, 1187, 1442
NspI RCATGY 1 cut(s) 1642
PciI ACATGT 1 cut(s) 1638
PciSI GCTCTTC 1 cut(s) 1096
PfeI GAWTC 7 cut(s) 57, 191, 232, 596, 655, 806, 842
PflMI CCANNNNNTGG 1 cut(s) 1348
PkrI GCNGC 4 cut(s) 721, 965, 1088, 1130
PleI GAGTC 5 cut(s) 640, 937, 1234, 1276, 1299
PpsI GAGTC 5 cut(s) 640, 937, 1234, 1276, 1299
PpuMI RGGWCCY 2 cut(s) 93, 1452
PscI ACATGT 1 cut(s) 1638
PsiI TTATAA 1 cut(s) 606
Psp124BI GAGCTC 1 cut(s) 1180
Psp5II RGGWCCY 2 cut(s) 93, 1452
Psp6I CCWGG 1 cut(s) 1341
PspGI CCWGG 1 cut(s) 1341
PspN4I GGNNCC 3 cut(s) 95, 910, 1454
PspPI GGNCC 4 cut(s) 93, 197, 1426, 1452
PspPPI RGGWCCY 2 cut(s) 93, 1452
PstNI CAGNNNCTG 1 cut(s) 418
PsuI RGATCY 1 cut(s) 908
RsaI GTAC 4 cut(s) 697, 815, 1491, 1637
RsaNI GTAC 4 cut(s) 696, 814, 1490, 1636
RseI CAYNNNNRTG 1 cut(s) 519
SacI GAGCTC 1 cut(s) 1180
SapI GCTCTTC 1 cut(s) 1096
SaqAI TTAA 5 cut(s) 885, 942, 1031, 1338, 1590
SatI GCNGC 4 cut(s) 720, 964, 1087, 1129
Sau3AI GATC 4 cut(s) 10, 259, 908, 1585
Sau96I GGNCC 4 cut(s) 93, 197, 1426, 1452
ScaI AGTACT 1 cut(s) 697
SchI GAGTC 5 cut(s) 641, 938, 1235, 1277, 1300
ScrFI CCNGG 3 cut(s) 196, 913, 1343
SduI GDGCHC 4 cut(s) 1180, 1308, 1400, 1506
SfaNI GCATC 1 cut(s) 1519
SfcI CTRYAG 1 cut(s) 855
SinI GGWCC 2 cut(s) 93, 1452
SmiMI CAYNNNNRTG 1 cut(s) 519
SmlI CTYRAG 1 cut(s) 1042
SmoI CTYRAG 1 cut(s) 1042
SpeI ACTAGT 1 cut(s) 401
SsiI CCGC 1 cut(s) 1086
SspMI CTAG 5 cut(s) 156, 165, 402, 659, 1083
SstI GAGCTC 1 cut(s) 1180
StyD4I CCNGG 3 cut(s) 194, 911, 1341
TaaI ACNGT 3 cut(s) 790, 1262, 1486
TatI WGTACW 2 cut(s) 695, 1635
TauI GCSGC 1 cut(s) 1089
TfiI GAWTC 7 cut(s) 57, 191, 232, 596, 655, 806, 842
Tru1I TTAA 5 cut(s) 885, 942, 1031, 1338, 1590
Tru9I TTAA 5 cut(s) 885, 942, 1031, 1338, 1590
TscAI CASTG 2 cut(s) 1102, 1267
TseFI GTSAC 6 cut(s) 72, 83, 347, 359, 1187, 1442
TseI GCWGC 3 cut(s) 719, 963, 1128
Tsp45I GTSAC 6 cut(s) 72, 83, 347, 359, 1187, 1442
TspDTI ATGAA 6 cut(s) 503, 519, 840, 1023, 1251, 1554
TspRI CASTG 2 cut(s) 1102, 1267
Van91I CCANNNNNTGG 1 cut(s) 1348
VpaK11BI GGWCC 2 cut(s) 93, 1452
XagI CCTNNNNNAGG 1 cut(s) 1320
XapI RAATTY 5 cut(s) 29, 619, 902, 1363, 1627
XbaI TCTAGA 1 cut(s) 658
XceI RCATGY 1 cut(s) 1642
XcmI CCANNNNNNNNNTGG 1 cut(s) 1436
XmiI GTMKAC 1 cut(s) 1257
XspI CTAG 5 cut(s) 156, 165, 402, 659, 1083
ZrmI AGTACT 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.