C2H2-type zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G26610 |
| fragaria_vesca | FvH4_4g30350 |
| malus_domestica | MD13G1064600.v1.1 MD16G1063100.v1.1 |
| prunus_persica | Prupe.1G283600_v2.0.a1 |
| pyrus_communis | pycom13g05700 pycom16g05530 |
| rosa_chinensis | RchiOBHm_Chr4g0438641 |
| rosa_laevigata | RLG00000006345 |
| rosa_multiflora | Rmu_co8449659.1_g000001 Rmu_sc0006646.1_g000008 |
| rosa_roxburghii | Rroxscaffold_5G00379630 |
| rosa_rugosa | Rorug04G0312100 |
| rosa_samantha | Rh4AG362500 Rh4BG373900 Rh4CG387800 Rh4DG368600 |
| rosa_wichuraiana | Rw0G007120 Rw0G016670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1307 |
| AclWI | GGATC | 3 cut(s) | 509, 949, 1026 |
| AcsI | RAATTY | 6 cut(s) | 32, 652, 914, 935, 947, 1405 |
| AcuI | CTGAAG | 4 cut(s) | 165, 240, 654, 1569 |
| AfaI | GTAC | 2 cut(s) | 521, 1533 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1355, 1561 |
| AgsI | TTSAA | 9 cut(s) | 106, 355, 416, 652, 805, 875, 1145, 1416, 1453 |
| AhlI | ACTAGT | 2 cut(s) | 431, 448 |
| Alw26I | GTCTC | 6 cut(s) | 470, 627, 689, 746, 786, 1315 |
| AlwI | GGATC | 3 cut(s) | 509, 949, 1026 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 218 |
| Ama87I | CYCGRG | 1 cut(s) | 624 |
| AoxI | GGCC | 2 cut(s) | 289, 1468 |
| ApeKI | GCWGC | 2 cut(s) | 307, 1170 |
| ApoI | RAATTY | 6 cut(s) | 32, 652, 914, 935, 947, 1405 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1202 |
| AspS9I | GGNCC | 3 cut(s) | 96, 290, 1494 |
| AsuHPI | GGTGA | 2 cut(s) | 168, 923 |
| AvaI | CYCGRG | 1 cut(s) | 624 |
| AvaII | GGWCC | 2 cut(s) | 96, 1494 |
| BaeGI | GKGCMC | 1 cut(s) | 1442 |
| BanII | GRGCYC | 1 cut(s) | 1222 |
| BbsI | GAAGAC | 2 cut(s) | 660, 1205 |
| BbvI | GCAGC | 2 cut(s) | 319, 1182 |
| BccI | CCATC | 1 cut(s) | 887 |
| BclI | TGATCA | 1 cut(s) | 1048 |
| BcoDI | GTCTC | 6 cut(s) | 470, 627, 689, 746, 786, 1315 |
| BcuI | ACTAGT | 2 cut(s) | 431, 448 |
| BfaI | CTAG | 4 cut(s) | 159, 432, 449, 692 |
| BfmI | CTRYAG | 1 cut(s) | 1150 |
| BisI | GCNGC | 2 cut(s) | 308, 1171 |
| BlpI | GCTNAGC | 1 cut(s) | 732 |
| BlsI | GCNGC | 2 cut(s) | 309, 1172 |
| Bme18I | GGWCC | 2 cut(s) | 96, 1494 |
| BmeT110I | CYCGRG | 1 cut(s) | 624 |
| BmgT120I | GGNCC | 3 cut(s) | 96, 290, 1494 |
| BmiI | GGNNCC | 3 cut(s) | 62, 98, 1496 |
| BpiI | GAAGAC | 2 cut(s) | 660, 1205 |
| BpmI | CTGGAG | 1 cut(s) | 143 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 732 |
| BsaBI | GATNNNNATC | 2 cut(s) | 18, 961 |
| BsaI | GGTCTC | 1 cut(s) | 746 |
| BsaJI | CCNNGG | 3 cut(s) | 78, 488, 1605 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 469, 499 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1355, 1561 |
| Bse8I | GATNNNNATC | 2 cut(s) | 18, 961 |
| BseDI | CCNNGG | 3 cut(s) | 78, 488, 1605 |
| BseGI | GGATG | 1 cut(s) | 1042 |
| BseJI | GATNNNNATC | 2 cut(s) | 18, 961 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1355, 1561 |
| BseMII | CTCAG | 8 cut(s) | 262, 438, 485, 654, 723, 801, 1257, 1320 |
| BseRI | GAGGAG | 2 cut(s) | 827, 1077 |
| BseSI | GKGCMC | 1 cut(s) | 1442 |
| BseXI | GCAGC | 2 cut(s) | 319, 1182 |
| BshFI | GGCC | 2 cut(s) | 291, 1470 |
| BsiHKCI | CYCGRG | 1 cut(s) | 624 |
| BslFI | GGGAC | 2 cut(s) | 1443, 1480 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1355, 1561 |
| BsmAI | GTCTC | 6 cut(s) | 470, 627, 689, 746, 786, 1315 |
| BsmFI | GGGAC | 2 cut(s) | 1443, 1480 |
| BsmI | GAATGC | 1 cut(s) | 232 |
| BsnI | GGCC | 2 cut(s) | 291, 1470 |
| Bso31I | GGTCTC | 1 cut(s) | 746 |
| BsoBI | CYCGRG | 1 cut(s) | 624 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1222, 1442 |
| Bsp143I | GATC | 7 cut(s) | 13, 501, 816, 941, 1018, 1048, 1585 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 732 |
| Bsp19I | CCATGG | 1 cut(s) | 1605 |
| BspANI | GGCC | 2 cut(s) | 291, 1470 |
| BspCNI | CTCAG | 8 cut(s) | 261, 437, 486, 655, 724, 802, 1258, 1321 |
| BspHI | TCATGA | 2 cut(s) | 1558, 1638 |
| BspLI | GGNNCC | 3 cut(s) | 62, 98, 1496 |
| BspMAI | CTGCAG | 1 cut(s) | 1154 |
| BspPI | GGATC | 3 cut(s) | 509, 949, 1026 |
| BspTNI | GGTCTC | 1 cut(s) | 746 |
| BssECI | CCNNGG | 3 cut(s) | 78, 488, 1605 |
| BssMI | GATC | 7 cut(s) | 13, 501, 816, 941, 1018, 1048, 1585 |
| BssT1I | CCWWGG | 3 cut(s) | 78, 488, 1605 |
| Bst4CI | ACNGT | 2 cut(s) | 823, 1528 |
| Bst6I | CTCTTC | 2 cut(s) | 547, 776 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 48 |
| BstC8I | GCNNGC | 1 cut(s) | 1240 |
| BstDEI | CTNAG | 8 cut(s) | 248, 424, 494, 663, 732, 810, 1266, 1329 |
| BstDSI | CCRYGG | 1 cut(s) | 1605 |
| BstF5I | GGATG | 1 cut(s) | 1042 |
| BstKTI | GATC | 7 cut(s) | 16, 504, 819, 944, 1021, 1051, 1588 |
| BstMAI | GTCTC | 6 cut(s) | 470, 627, 689, 746, 786, 1315 |
| BstMBI | GATC | 7 cut(s) | 13, 501, 816, 941, 1018, 1048, 1585 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 48, 589, 1345, 1446 |
| BstSFI | CTRYAG | 1 cut(s) | 1150 |
| BstSLI | GKGCMC | 1 cut(s) | 1442 |
| BstV1I | GCAGC | 2 cut(s) | 319, 1182 |
| BstV2I | GAAGAC | 2 cut(s) | 660, 1205 |
| BstX2I | RGATCY | 2 cut(s) | 501, 941 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1505 |
| BstYI | RGATCY | 2 cut(s) | 501, 941 |
| BsuRI | GGCC | 2 cut(s) | 291, 1470 |
| BtgI | CCRYGG | 1 cut(s) | 1605 |
| BtsCI | GGATG | 1 cut(s) | 1042 |
| BtsI | GCAGTG | 3 cut(s) | 1360, 1399, 1572 |
| BtsIMutI | CAGTG | 5 cut(s) | 819, 1302, 1360, 1399, 1572 |
| Cac8I | GCNNGC | 1 cut(s) | 1240 |
| CaiI | CAGNNNCTG | 1 cut(s) | 218 |
| CciI | TCATGA | 2 cut(s) | 1558, 1638 |
| Cfr13I | GGNCC | 3 cut(s) | 96, 290, 1494 |
| Csp6I | GTAC | 2 cut(s) | 520, 1532 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 313, 348 |
| CviAII | CATG | 8 cut(s) | 778, 857, 1273, 1433, 1559, 1606, 1639, 1644 |
| CviQI | GTAC | 2 cut(s) | 520, 1532 |
| DdeI | CTNAG | 8 cut(s) | 248, 424, 494, 663, 732, 810, 1266, 1329 |
| DpnI | GATC | 7 cut(s) | 15, 503, 818, 943, 1020, 1050, 1587 |
| DpnII | GATC | 7 cut(s) | 13, 501, 816, 941, 1018, 1048, 1585 |
| DraI | TTTAAA | 1 cut(s) | 1074 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1307 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1307 |
| Eam1104I | CTCTTC | 2 cut(s) | 547, 776 |
| EarI | CTCTTC | 2 cut(s) | 547, 776 |
| Eco130I | CCWWGG | 3 cut(s) | 78, 488, 1605 |
| Eco24I | GRGCYC | 1 cut(s) | 1222 |
| Eco31I | GGTCTC | 1 cut(s) | 746 |
| Eco47I | GGWCC | 2 cut(s) | 96, 1494 |
| Eco57I | CTGAAG | 4 cut(s) | 165, 240, 654, 1569 |
| Eco88I | CYCGRG | 1 cut(s) | 624 |
| EcoO109I | RGGNCCY | 3 cut(s) | 96, 290, 1494 |
| EcoRI | GAATTC | 1 cut(s) | 652 |
| EcoT14I | CCWWGG | 3 cut(s) | 78, 488, 1605 |
| EcoT22I | ATGCAT | 1 cut(s) | 1084 |
| EcoT38I | GRGCYC | 1 cut(s) | 1222 |
| ErhI | CCWWGG | 3 cut(s) | 78, 488, 1605 |
| FaeI | CATG | 8 cut(s) | 781, 860, 1276, 1436, 1562, 1609, 1642, 1647 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1187, 1219 |
| FaqI | GGGAC | 2 cut(s) | 1443, 1480 |
| FatI | CATG | 8 cut(s) | 777, 856, 1272, 1432, 1558, 1605, 1638, 1643 |
| FauNDI | CATATG | 2 cut(s) | 372, 996 |
| FbaI | TGATCA | 1 cut(s) | 1048 |
| Fnu4HI | GCNGC | 2 cut(s) | 308, 1171 |
| FokI | GGATG | 1 cut(s) | 1029 |
| FriOI | GRGCYC | 1 cut(s) | 1222 |
| Fsp4HI | GCNGC | 2 cut(s) | 308, 1171 |
| FspBI | CTAG | 4 cut(s) | 159, 432, 449, 692 |
| GluI | GCNGC | 2 cut(s) | 308, 1171 |
| GsuI | CTGGAG | 1 cut(s) | 143 |
| HaeIII | GGCC | 2 cut(s) | 291, 1470 |
| Hin1II | CATG | 8 cut(s) | 781, 860, 1276, 1436, 1562, 1609, 1642, 1647 |
| HindIII | AAGCTT | 3 cut(s) | 410, 1337, 1473 |
| HphI | GGTGA | 2 cut(s) | 168, 923 |
| Hpy166II | GTNNAC | 1 cut(s) | 538 |
| Hpy188III | TCNNGA | 8 cut(s) | 94, 122, 530, 626, 692, 1046, 1559, 1639 |
| Hpy8I | GTNNAC | 1 cut(s) | 538 |
| HpyAV | CCTTC | 9 cut(s) | 189, 349, 385, 492, 862, 978, 1009, 1213, 1604 |
| HpyCH4III | ACNGT | 2 cut(s) | 823, 1528 |
| HpyCH4IV | ACGT | 1 cut(s) | 1380 |
| HpyCH4V | TGCA | 9 cut(s) | 42, 51, 307, 324, 1057, 1082, 1152, 1353, 1397 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 48, 589, 1345, 1446 |
| HpyF3I | CTNAG | 8 cut(s) | 248, 424, 494, 663, 732, 810, 1266, 1329 |
| HpySE526I | ACGT | 1 cut(s) | 1380 |
| Hsp92II | CATG | 8 cut(s) | 781, 860, 1276, 1436, 1562, 1609, 1642, 1647 |
| Ksp22I | TGATCA | 1 cut(s) | 1048 |
| Kzo9I | GATC | 7 cut(s) | 13, 501, 816, 941, 1018, 1048, 1585 |
| LmnI | GCTCC | 2 cut(s) | 490, 1606 |
| Lsp1109I | GCAGC | 2 cut(s) | 319, 1182 |
| MaeI | CTAG | 4 cut(s) | 159, 432, 449, 692 |
| MaeII | ACGT | 1 cut(s) | 1380 |
| MaeIII | GTNAC | 5 cut(s) | 86, 239, 380, 635, 1484 |
| MalI | GATC | 7 cut(s) | 15, 503, 818, 943, 1020, 1050, 1587 |
| MboI | GATC | 7 cut(s) | 13, 501, 816, 941, 1018, 1048, 1585 |
| MfeI | CAATTG | 2 cut(s) | 745, 1368 |
| MflI | RGATCY | 2 cut(s) | 501, 941 |
| MhlI | GDGCHC | 2 cut(s) | 1222, 1442 |
| MlyI | GAGTC | 2 cut(s) | 674, 1277 |
| MmeI | TCCRAC | 2 cut(s) | 1346, 1486 |
| Mph1103I | ATGCAT | 1 cut(s) | 1084 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1202 |
| MseI | TTAA | 6 cut(s) | 405, 975, 980, 1073, 1085, 1590 |
| MunI | CAATTG | 2 cut(s) | 745, 1368 |
| Mva1269I | GAATGC | 1 cut(s) | 232 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 48, 589, 1345, 1446 |
| NcoI | CCATGG | 1 cut(s) | 1605 |
| NdeI | CATATG | 2 cut(s) | 372, 996 |
| NdeII | GATC | 7 cut(s) | 13, 501, 816, 941, 1018, 1048, 1585 |
| NlaIII | CATG | 8 cut(s) | 781, 860, 1276, 1436, 1562, 1609, 1642, 1647 |
| NlaIV | GGNNCC | 3 cut(s) | 62, 98, 1496 |
| NmuCI | GTSAC | 4 cut(s) | 86, 380, 635, 1484 |
| NsiI | ATGCAT | 1 cut(s) | 1084 |
| PagI | TCATGA | 2 cut(s) | 1558, 1638 |
| PctI | GAATGC | 1 cut(s) | 232 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1202 |
| PfeI | GAWTC | 9 cut(s) | 19, 209, 256, 284, 526, 629, 839, 875, 962 |
| PkrI | GCNGC | 2 cut(s) | 309, 1172 |
| PleI | GAGTC | 2 cut(s) | 673, 1276 |
| PpsI | GAGTC | 2 cut(s) | 673, 1276 |
| PpuMI | RGGWCCY | 2 cut(s) | 96, 1494 |
| Psp5II | RGGWCCY | 2 cut(s) | 96, 1494 |
| PspN4I | GGNNCC | 3 cut(s) | 62, 98, 1496 |
| PspPI | GGNCC | 3 cut(s) | 96, 290, 1494 |
| PspPPI | RGGWCCY | 2 cut(s) | 96, 1494 |
| PstI | CTGCAG | 1 cut(s) | 1154 |
| PstNI | CAGNNNCTG | 1 cut(s) | 218 |
| PsuI | RGATCY | 2 cut(s) | 501, 941 |
| RsaI | GTAC | 2 cut(s) | 521, 1533 |
| RsaNI | GTAC | 2 cut(s) | 520, 1532 |
| SaqAI | TTAA | 6 cut(s) | 405, 975, 980, 1073, 1085, 1590 |
| SatI | GCNGC | 2 cut(s) | 308, 1171 |
| Sau3AI | GATC | 7 cut(s) | 13, 501, 816, 941, 1018, 1048, 1585 |
| Sau96I | GGNCC | 3 cut(s) | 96, 290, 1494 |
| SchI | GAGTC | 2 cut(s) | 674, 1277 |
| SduI | GDGCHC | 2 cut(s) | 1222, 1442 |
| SfcI | CTRYAG | 1 cut(s) | 1150 |
| SinI | GGWCC | 2 cut(s) | 96, 1494 |
| SpeI | ACTAGT | 2 cut(s) | 431, 448 |
| SspMI | CTAG | 4 cut(s) | 159, 432, 449, 692 |
| StyI | CCWWGG | 3 cut(s) | 78, 488, 1605 |
| TaaI | ACNGT | 2 cut(s) | 823, 1528 |
| TaiI | ACGT | 1 cut(s) | 1383 |
| TaqI | TCGA | 3 cut(s) | 579, 755, 1162 |
| TfiI | GAWTC | 9 cut(s) | 19, 209, 256, 284, 526, 629, 839, 875, 962 |
| Tru1I | TTAA | 6 cut(s) | 405, 975, 980, 1073, 1085, 1590 |
| Tru9I | TTAA | 6 cut(s) | 405, 975, 980, 1073, 1085, 1590 |
| TscAI | CASTG | 5 cut(s) | 826, 1309, 1360, 1399, 1579 |
| TseFI | GTSAC | 4 cut(s) | 86, 380, 635, 1484 |
| TseI | GCWGC | 2 cut(s) | 307, 1170 |
| Tsp45I | GTSAC | 4 cut(s) | 86, 380, 635, 1484 |
| TspRI | CASTG | 5 cut(s) | 826, 1309, 1360, 1399, 1579 |
| VpaK11BI | GGWCC | 2 cut(s) | 96, 1494 |
| XapI | RAATTY | 6 cut(s) | 32, 652, 914, 935, 947, 1405 |
| XbaI | TCTAGA | 1 cut(s) | 691 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1478 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1202 |
| XspI | CTAG | 4 cut(s) | 159, 432, 449, 692 |
| Zsp2I | ATGCAT | 1 cut(s) | 1084 |