MD16G1286200.v1.1

Long-chain-alcohol oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0015043
Physical Location & Seq
Reverse (-)
40917193 .. 40918386
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1286200.v1.1.491

Sequence Viewer

Length: 1131 bp
ATGGGAGTTCAATCTGAAATACAAGAAGAAGGGTTCAACAATGCAGTTTTGAGAAAAGGGTGCCAAGAGTTGAGGTATCCAATGGAAAATATTCCTCGAAACTCAACGCCGGGTCATTATTGTGGTTGGTGTTGTCTTGGCTACAAGGATGGAAGGAAAAGAGGTGCCACGGAGACGTGGTTTGTGGATTTGGTGAATTCTGGTAACGGTGCGATTTTTTCTGGATGCGAGGCTGTAAAAGCGTTGCACAAGAGAAATAAAGGAAGAGGACATAGAAACACAGCTACTGGGGTGGCATTCAAATTCGAGCATGAAGGGGGTAGAAATATAGGTTTCGTGGAGTCTAAGGTAACTATTGTTGCTTGTGGAGCTCTCAGCACTCCAAAACTGTTAAAGCGAAGCGAATTGAAGAATGGTAATATAGGGAAAAACTTGCATTTGCATTCGAAGAAAAGCTTCGAAGGAGGGATACTGACAGCAATGTCTACTGTTGTAGCGGATTTCGATGGGTCTGGATATGGAGCTGTGATACAGACGCCAACTTTGCATCCGGGTATGTTATCAATTGTAATTCCTTGGGTTTCAGGCAAAGATACAAAACGGAGAATGAGCATGTTCTCTAGGACTGCCCATGTATTTGCATTGGTAAGAGATAAAGGGTCAGGAACTGTGAATGCACCACCAAACTCAGTCAGTTATGAAATGGAAGCTATTGACGAACATAATCTGAACACAGGGCTAGAGAAGTCGTTGAGGATACTGGCAGCGGCCGGAGCTGAAGAGATTGGAACCCATCATTTTAAAGGGAAAAGCTTAGCTGTGAAGAAGGCAAGTTTGGATGAGTTTGAGAGGTTTGTAAAAGAGGAGAGTTCAAGGTCATTAAGAGACCTTTCCTCGGCCATATGTTTAGCTTATCAGATGGGGAGCTGCAGGATGGGTGTTGACGCGAAGGGGTCCGTGGTGAATCAAATGGGAGAGACATGGGAGGTGGAGAGACTTTTTTTGGCAGATACAAGTGTTTTTCCAACGGCTTTAGGAGTGAATCCAATGGTCACTGTTCAGGCTATTGCTTACTGCACTGCCCAATCTGTTCTTGAAGTACTTAGGAAAAATAAGTTAGATAATACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008152 GO:0016491 GO:0044464 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GMC_oxred_C GMC_oxred_N

Protein Analysis

377

Amino Acids

40.92

Weight (kDa)

9.04

Isoelectric Point (pI)

33.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GMC_oxred_N PF00732 1 - 149 2e-34 GMC oxidoreductase
GMC_oxred_C PF05199 231 - 357 9.1e-19 GMC oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015043)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19380 AT4G19380
malus_domestica MD16G1286200.v1.1
prunus_persica Prupe.5G013900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0215241
rosa_laevigata RLG00000002680
rosa_multiflora Rmu_co8143572.1_g000001 Rmu_co8276433.1_g000001
rosa_roxburghii Rroxscaffold_3G00244400
rosa_rugosa Rorug07G0151400
rosa_samantha Rh7AG288100 Rh7BG280000 Rh7BG280100 Rh7CG307900 Rh7DG291600
rosa_wichuraiana Rw7G024610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 481
AccB1I GGYRCC 2 cut(s) 60, 164
AccI GTMKAC 1 cut(s) 485
AccII CGCG 1 cut(s) 947
AciI CCGC 2 cut(s) 497, 767
AcoI YGGCCR 2 cut(s) 768, 897
AcsI RAATTY 2 cut(s) 196, 302
AcuI CTGAAG 1 cut(s) 798
AcyI GRCGYC 1 cut(s) 536
AfaI GTAC 1 cut(s) 1101
AfiI CCNNNNNNNGG 1 cut(s) 895
AgsI TTSAA 6 cut(s) 11, 37, 301, 409, 873, 1097
AjiI CACGTC 1 cut(s) 177
AjuI GAANNNNNNNTTGG 2 cut(s) 818, 850
Alw21I GWGCWC 1 cut(s) 373
Alw26I GTCTC 4 cut(s) 167, 879, 971, 988
AlwNI CAGNNNCTG 2 cut(s) 287, 668
AoxI GGCC 2 cut(s) 768, 897
ApeKI GCWGC 2 cut(s) 764, 927
ApoI RAATTY 2 cut(s) 196, 302
ArsI GACNNNNNNTTYG 2 cut(s) 526, 558
Asp700I GAANNNNTTC 2 cut(s) 90, 455
AspS9I GGNCC 1 cut(s) 954
AsuC2I CCSGG 2 cut(s) 111, 552
AsuHPI GGTGA 2 cut(s) 205, 973
AsuII TTCGAA 2 cut(s) 446, 459
AvaII GGWCC 1 cut(s) 954
BaeI ACNNNNGTAYC 2 cut(s) 1002, 1035
BanI GGYRCC 2 cut(s) 60, 164
BanII GRGCYC 1 cut(s) 373
BarI GAAGNNNNNNTAC 2 cut(s) 453, 485
Bbv12I GWGCWC 1 cut(s) 373
BbvI GCAGC 2 cut(s) 776, 914
BccI CCATC 5 cut(s) 143, 500, 801, 913, 928
BceAI ACGGC 1 cut(s) 1044
BciVI GTATCC 3 cut(s) 87, 462, 750
BcnI CCSGG 2 cut(s) 111, 552
BcoDI GTCTC 4 cut(s) 167, 879, 971, 988
BfaI CTAG 2 cut(s) 621, 740
BfmI CTRYAG 1 cut(s) 928
BfuI GTATCC 3 cut(s) 87, 462, 750
BisI GCNGC 3 cut(s) 765, 768, 928
BlpI GCTNAGC 1 cut(s) 814
BlsI GCNGC 3 cut(s) 766, 769, 929
BmcAI AGTACT 1 cut(s) 1101
Bme1390I CCNGG 2 cut(s) 111, 552
Bme18I GGWCC 1 cut(s) 954
BmgBI CACGTC 1 cut(s) 177
BmgT120I GGNCC 1 cut(s) 954
BmiI GGNNCC 4 cut(s) 62, 166, 790, 955
BmrFI CCNGG 2 cut(s) 111, 552
BmrI ACTGGG 1 cut(s) 297
BmsI GCATC 2 cut(s) 215, 556
BmuI ACTGGG 1 cut(s) 297
Bpu1102I GCTNAGC 1 cut(s) 814
Bpu14I TTCGAA 2 cut(s) 446, 459
BpuMI CCSGG 2 cut(s) 111, 552
BsaHI GRCGYC 1 cut(s) 536
BsaI GGTCTC 1 cut(s) 879
BsaJI CCNNGG 4 cut(s) 168, 575, 894, 957
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bsc4I CCNNNNNNNGG 1 cut(s) 895
Bse1I ACTGG 2 cut(s) 292, 765
Bse3DI GCAATG 1 cut(s) 486
BseDI CCNNGG 4 cut(s) 168, 575, 894, 957
BseGI GGATG 5 cut(s) 154, 230, 547, 844, 939
BseLI CCNNNNNNNGG 1 cut(s) 895
BseMI GCAATG 1 cut(s) 486
BseMII CTCAG 2 cut(s) 388, 702
BseNI ACTGG 2 cut(s) 292, 765
BseRI GAGGAG 1 cut(s) 878
BseX3I CGGCCG 1 cut(s) 768
BseXI GCAGC 2 cut(s) 776, 914
BsgI GTGCAG 1 cut(s) 1060
Bsh1236I CGCG 1 cut(s) 947
Bsh1285I CGRYCG 1 cut(s) 771
BshFI GGCC 2 cut(s) 770, 899
BshNI GGYRCC 2 cut(s) 60, 164
BsiEI CGRYCG 1 cut(s) 771
BsiHKAI GWGCWC 1 cut(s) 373
BsiSI CCGG 3 cut(s) 110, 551, 771
BslI CCNNNNNNNGG 1 cut(s) 895
BsmAI GTCTC 4 cut(s) 167, 879, 971, 988
BsmBI CGTCTC 1 cut(s) 167
BsmI GAATGC 3 cut(s) 296, 442, 679
BsnI GGCC 2 cut(s) 770, 899
Bso31I GGTCTC 1 cut(s) 879
Bsp119I TTCGAA 2 cut(s) 446, 459
Bsp1286I GDGCHC 1 cut(s) 373
Bsp1720I GCTNAGC 1 cut(s) 814
BspACI CCGC 2 cut(s) 497, 767
BspANI GGCC 2 cut(s) 770, 899
BspCNI CTCAG 2 cut(s) 387, 701
BspFNI CGCG 1 cut(s) 947
BspLI GGNNCC 4 cut(s) 62, 166, 790, 955
BspMAI CTGCAG 1 cut(s) 932
BspT104I TTCGAA 2 cut(s) 446, 459
BspT107I GGYRCC 2 cut(s) 60, 164
BspTNI GGTCTC 1 cut(s) 879
BsrDI GCAATG 1 cut(s) 486
BsrI ACTGG 2 cut(s) 292, 765
BssECI CCNNGG 4 cut(s) 168, 575, 894, 957
BssNI GRCGYC 1 cut(s) 536
BssT1I CCWWGG 1 cut(s) 575
Bst4CI ACNGT 5 cut(s) 209, 390, 490, 670, 1057
Bst6I CTCTTC 2 cut(s) 259, 774
BstACI GRCGYC 1 cut(s) 536
BstBI TTCGAA 2 cut(s) 446, 459
BstDEI CTNAG 5 cut(s) 345, 374, 688, 814, 1103
BstDSI CCRYGG 2 cut(s) 168, 957
BstF5I GGATG 5 cut(s) 154, 230, 547, 844, 939
BstFNI CGCG 1 cut(s) 947
BstMAI GTCTC 4 cut(s) 167, 879, 971, 988
BstMCI CGRYCG 1 cut(s) 771
BstMWI GCNNNNNNNGC 4 cut(s) 239, 368, 544, 773
BstNSI RCATGY 1 cut(s) 616
BstSCI CCNGG 2 cut(s) 109, 550
BstSFI CTRYAG 1 cut(s) 928
BstUI CGCG 1 cut(s) 947
BstV1I GCAGC 2 cut(s) 776, 914
BstZI CGGCCG 1 cut(s) 768
BsuI GTATCC 3 cut(s) 87, 462, 750
BsuRI GGCC 2 cut(s) 770, 899
BtgI CCRYGG 2 cut(s) 168, 957
BtrI CACGTC 1 cut(s) 177
BtsCI GGATG 5 cut(s) 154, 230, 547, 844, 939
BtsI GCAGTG 1 cut(s) 1077
BtsIMutI CAGTG 2 cut(s) 1053, 1077
CaiI CAGNNNCTG 2 cut(s) 287, 668
Cfr13I GGNCC 1 cut(s) 954
CseI GACGC 2 cut(s) 544, 953
Csp6I GTAC 1 cut(s) 1100
CviAII CATG 4 cut(s) 311, 613, 632, 981
CviQI GTAC 1 cut(s) 1100
DdeI CTNAG 5 cut(s) 345, 374, 688, 814, 1103
DraI TTTAAA 1 cut(s) 802
DrdI GACNNNNNNGTC 1 cut(s) 481
DseDI GACNNNNNNGTC 1 cut(s) 481
EaeI YGGCCR 2 cut(s) 768, 897
EagI CGGCCG 1 cut(s) 768
Eam1104I CTCTTC 2 cut(s) 259, 774
EarI CTCTTC 2 cut(s) 259, 774
Ecl136II GAGCTC 1 cut(s) 371
EclXI CGGCCG 1 cut(s) 768
Eco130I CCWWGG 1 cut(s) 575
Eco24I GRGCYC 1 cut(s) 373
Eco31I GGTCTC 1 cut(s) 879
Eco47I GGWCC 1 cut(s) 954
Eco52I CGGCCG 1 cut(s) 768
Eco53kI GAGCTC 1 cut(s) 371
Eco57I CTGAAG 1 cut(s) 798
EcoICRI GAGCTC 1 cut(s) 371
EcoRI GAATTC 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 575
EcoT38I GRGCYC 1 cut(s) 373
ErhI CCWWGG 1 cut(s) 575
Esp3I CGTCTC 1 cut(s) 167
FaeI CATG 4 cut(s) 314, 616, 635, 984
FalI AAGNNNNNCTT 2 cut(s) 440, 472
FatI CATG 4 cut(s) 310, 612, 631, 980
FauNDI CATATG 1 cut(s) 902
FblI GTMKAC 1 cut(s) 485
Fnu4HI GCNGC 3 cut(s) 765, 768, 928
FokI GGATG 5 cut(s) 161, 237, 534, 851, 946
FriOI GRGCYC 1 cut(s) 373
Fsp4HI GCNGC 3 cut(s) 765, 768, 928
FspBI CTAG 2 cut(s) 621, 740
GluI GCNGC 3 cut(s) 765, 768, 928
HaeIII GGCC 2 cut(s) 770, 899
HapII CCGG 3 cut(s) 110, 551, 771
HgaI GACGC 2 cut(s) 544, 953
Hin1I GRCGYC 1 cut(s) 536
Hin1II CATG 4 cut(s) 314, 616, 635, 984
HincII GTYRAC 1 cut(s) 943
HindII GTYRAC 1 cut(s) 943
HindIII AAGCTT 2 cut(s) 454, 811
HinfI GANTC 3 cut(s) 341, 964, 1042
HpaII CCGG 3 cut(s) 110, 551, 771
HphI GGTGA 2 cut(s) 205, 973
Hpy166II GTNNAC 2 cut(s) 486, 943
Hpy188I TCNGA 3 cut(s) 16, 729, 918
Hpy188III TCNNGA 4 cut(s) 222, 513, 663, 1094
Hpy8I GTNNAC 2 cut(s) 486, 943
HpyAV CCTTC 6 cut(s) 23, 147, 308, 455, 820, 943
HpyCH4III ACNGT 5 cut(s) 209, 390, 490, 670, 1057
HpyCH4IV ACGT 1 cut(s) 176
HpyCH4V TGCA 9 cut(s) 44, 247, 436, 442, 547, 641, 677, 930, 1077
HpyF10VI GCNNNNNNNGC 4 cut(s) 239, 368, 544, 773
HpyF3I CTNAG 5 cut(s) 345, 374, 688, 814, 1103
HpySE526I ACGT 1 cut(s) 176
Hsp92I GRCGYC 1 cut(s) 536
Hsp92II CATG 4 cut(s) 314, 616, 635, 984
LmnI GCTCC 4 cut(s) 368, 521, 773, 924
Lsp1109I GCAGC 2 cut(s) 776, 914
LweI GCATC 2 cut(s) 215, 556
MaeI CTAG 2 cut(s) 621, 740
MaeII ACGT 1 cut(s) 176
MaeIII GTNAC 3 cut(s) 203, 349, 1051
MboII GAAGA 6 cut(s) 38, 276, 421, 460, 791, 835
MfeI CAATTG 1 cut(s) 564
MhlI GDGCHC 1 cut(s) 373
MluCI AATT 5 cut(s) 196, 302, 404, 564, 570
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 1 cut(s) 1049
MroXI GAANNNNTTC 2 cut(s) 90, 455
MseI TTAA 3 cut(s) 392, 801, 881
MslI CAYNNNNRTG 1 cut(s) 120
MspA1I CMGCKG 1 cut(s) 767
MspI CCGG 3 cut(s) 110, 551, 771
MspR9I CCNGG 2 cut(s) 111, 552
MunI CAATTG 1 cut(s) 564
Mva1269I GAATGC 3 cut(s) 296, 442, 679
MvnI CGCG 1 cut(s) 947
MwoI GCNNNNNNNGC 4 cut(s) 239, 368, 544, 773
NciI CCSGG 2 cut(s) 111, 552
NdeI CATATG 1 cut(s) 902
NlaIII CATG 4 cut(s) 314, 616, 635, 984
NlaIV GGNNCC 4 cut(s) 62, 166, 790, 955
NmeAIII GCCGAG 1 cut(s) 875
NmuCI GTSAC 1 cut(s) 1051
NspI RCATGY 1 cut(s) 616
NspV TTCGAA 2 cut(s) 446, 459
PctI GAATGC 3 cut(s) 296, 442, 679
PdmI GAANNNNTTC 2 cut(s) 90, 455
PfeI GAWTC 2 cut(s) 964, 1042
PkrI GCNGC 3 cut(s) 766, 769, 929
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
Psp124BI GAGCTC 1 cut(s) 373
PspN4I GGNNCC 4 cut(s) 62, 166, 790, 955
PspPI GGNCC 1 cut(s) 954
PstI CTGCAG 1 cut(s) 932
PstNI CAGNNNCTG 2 cut(s) 287, 668
RsaI GTAC 1 cut(s) 1101
RsaNI GTAC 1 cut(s) 1100
RseI CAYNNNNRTG 1 cut(s) 120
SacI GAGCTC 1 cut(s) 373
SaqAI TTAA 3 cut(s) 392, 801, 881
SatI GCNGC 3 cut(s) 765, 768, 928
Sau96I GGNCC 1 cut(s) 954
ScaI AGTACT 1 cut(s) 1101
SchI GAGTC 1 cut(s) 350
ScrFI CCNGG 2 cut(s) 111, 552
SduI GDGCHC 1 cut(s) 373
SfaNI GCATC 2 cut(s) 215, 556
SfcI CTRYAG 1 cut(s) 928
SfuI TTCGAA 2 cut(s) 446, 459
SinI GGWCC 1 cut(s) 954
SmiMI CAYNNNNRTG 1 cut(s) 120
Sse9I AATT 5 cut(s) 196, 302, 404, 564, 570
SsiI CCGC 2 cut(s) 497, 767
SspI AATATT 1 cut(s) 91
SspMI CTAG 2 cut(s) 621, 740
SstI GAGCTC 1 cut(s) 373
StyD4I CCNGG 2 cut(s) 109, 550
StyI CCWWGG 1 cut(s) 575
TaaI ACNGT 5 cut(s) 209, 390, 490, 670, 1057
TaiI ACGT 1 cut(s) 179
TaqI TCGA 5 cut(s) 97, 306, 446, 459, 504
TasI AATT 5 cut(s) 196, 302, 404, 564, 570
TatI WGTACW 1 cut(s) 1099
TauI GCSGC 1 cut(s) 770
TfiI GAWTC 2 cut(s) 964, 1042
Tru1I TTAA 3 cut(s) 392, 801, 881
Tru9I TTAA 3 cut(s) 392, 801, 881
TscAI CASTG 2 cut(s) 1060, 1084
TseFI GTSAC 1 cut(s) 1051
TseI GCWGC 2 cut(s) 764, 927
Tsp45I GTSAC 1 cut(s) 1051
TspDTI ATGAA 2 cut(s) 327, 714
TspGWI ACGGA 3 cut(s) 185, 616, 946
TspRI CASTG 2 cut(s) 1060, 1084
VpaK11BI GGWCC 1 cut(s) 954
XapI RAATTY 2 cut(s) 196, 302
XceI RCATGY 1 cut(s) 616
XmiI GTMKAC 1 cut(s) 485
XmnI GAANNNNTTC 2 cut(s) 90, 455
XspI CTAG 2 cut(s) 621, 740
ZrmI AGTACT 1 cut(s) 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.