Rh7BG280000

Long-chain-alcohol oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0015043
Physical Location & Seq
Forward (+)
26066592 .. 26067008
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG280000.1

Sequence Viewer

Length: 417 bp
ATGGATCAAATGTACCTATCAGAAGGTTTGGTTGCAACTGATGATATGGGGGTTTTACTACTTGCTGGCTCCACTGTTGGTGGAGGCTCTACAATCAACTGGTCAGCCTCAATTCGAACACCTCAGCATGTAATTAGCGAATGGTGCAATCACCATCGGCTAGAACTGTTCGACAGTCAACTATATCAAGAAGCCATGGATATTGTCTGCCAACGAATGGGAGTTCAATCTGACATACATGAAGAAGGATTCAACAATGCTGTTTTGAGAAGAGGGTGCCAAGAATTGGGGTATCCTCACTATCCTGTACATAATGTTCCTCGAAACGCAGGACCAGATCACTATTGTGGTTGGTGCTGCCTCGCTGCAAGGATGGAAGCAAAAAGGGTACATCAGAGACATGGCTGGTGGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008152 GO:0016491 GO:0044464 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GMC_oxred_C GMC_oxred_N

Protein Analysis

138

Amino Acids

15.65

Weight (kDa)

5.93

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GMC_oxred_N PF00732 1 - 129 3.8e-35 GMC oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015043)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19380 AT4G19380
malus_domestica MD16G1286200.v1.1
prunus_persica Prupe.5G013900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0215241
rosa_laevigata RLG00000002680
rosa_multiflora Rmu_co8143572.1_g000001 Rmu_co8276433.1_g000001
rosa_roxburghii Rroxscaffold_3G00244400
rosa_rugosa Rorug07G0151400
rosa_samantha Rh7AG288100 Rh7BG280000 Rh7BG280100 Rh7CG307900 Rh7DG291600
rosa_wichuraiana Rw7G024610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 276
AccB7I CCANNNNNTGG 2 cut(s) 217, 286
AclWI GGATC 1 cut(s) 12
AfaI GTAC 3 cut(s) 14, 309, 390
AfiI CCNNNNNNNGG 2 cut(s) 217, 286
AgsI TTSAA 2 cut(s) 227, 253
AleI CACNNNNGTG 1 cut(s) 345
Alw26I GTCTC 1 cut(s) 391
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 2 cut(s) 357, 365
AspS9I GGNCC 1 cut(s) 332
AsuHPI GGTGA 1 cut(s) 143
AsuII TTCGAA 1 cut(s) 115
AvaII GGWCC 1 cut(s) 332
BanI GGYRCC 1 cut(s) 276
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 344, 352
BccI CCATC 2 cut(s) 162, 367
BciVI GTATCC 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 391
BfaI CTAG 1 cut(s) 161
BfuI GTATCC 1 cut(s) 303
BisI GCNGC 2 cut(s) 358, 366
BlsI GCNGC 2 cut(s) 359, 367
Bme18I GGWCC 1 cut(s) 332
BmgT120I GGNCC 1 cut(s) 332
BmiI GGNNCC 2 cut(s) 70, 278
Bpu10I CCTNAGC 1 cut(s) 123
Bpu14I TTCGAA 1 cut(s) 115
BsaJI CCNNGG 1 cut(s) 195
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 286
Bse1I ACTGG 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 1 cut(s) 378
BseLI CCNNNNNNNGG 2 cut(s) 217, 286
BseMII CTCAG 1 cut(s) 137
BseNI ACTGG 1 cut(s) 104
BseXI GCAGC 2 cut(s) 344, 352
BshNI GGYRCC 1 cut(s) 276
BslI CCNNNNNNNGG 2 cut(s) 217, 286
BsmAI GTCTC 1 cut(s) 391
Bsp119I TTCGAA 1 cut(s) 115
Bsp1407I TGTACA 1 cut(s) 307
Bsp143I GATC 2 cut(s) 4, 337
Bsp19I CCATGG 1 cut(s) 195
BspCNI CTCAG 1 cut(s) 136
BspLI GGNNCC 2 cut(s) 70, 278
BspPI GGATC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 115
BspT107I GGYRCC 1 cut(s) 276
BsrGI TGTACA 1 cut(s) 307
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 2 cut(s) 4, 337
BssT1I CCWWGG 1 cut(s) 195
Bst4CI ACNGT 3 cut(s) 76, 168, 176
Bst6I CTCTTC 1 cut(s) 265
BstAUI TGTACA 1 cut(s) 307
BstBI TTCGAA 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 67
BstDEI CTNAG 2 cut(s) 123, 414
BstDSI CCRYGG 1 cut(s) 195
BstF5I GGATG 1 cut(s) 378
BstKTI GATC 2 cut(s) 7, 340
BstMAI GTCTC 1 cut(s) 391
BstMBI GATC 2 cut(s) 4, 337
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstNSI RCATGY 1 cut(s) 131
BstV1I GCAGC 2 cut(s) 344, 352
BsuI GTATCC 1 cut(s) 303
BtgI CCRYGG 1 cut(s) 195
BtsCI GGATG 1 cut(s) 378
BtsIMutI CAGTG 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 332
Csp6I GTAC 3 cut(s) 13, 308, 389
CviAII CATG 4 cut(s) 128, 196, 239, 401
CviJI RGCY 6 cut(s) 69, 87, 107, 160, 194, 405
CviKI_1 RGCY 6 cut(s) 69, 87, 107, 160, 194, 405
CviQI GTAC 3 cut(s) 13, 308, 389
DdeI CTNAG 2 cut(s) 123, 414
DpnI GATC 2 cut(s) 6, 339
DpnII GATC 2 cut(s) 4, 337
Eam1104I CTCTTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 4 cut(s) 131, 199, 242, 404
FaiI YATR 8 cut(s) 47, 129, 184, 197, 236, 240, 312, 402
FatI CATG 4 cut(s) 127, 195, 238, 400
Fnu4HI GCNGC 2 cut(s) 358, 366
FokI GGATG 1 cut(s) 385
Fsp4HI GCNGC 2 cut(s) 358, 366
FspBI CTAG 1 cut(s) 161
GluI GCNGC 2 cut(s) 358, 366
Hin1II CATG 4 cut(s) 131, 199, 242, 404
HincII GTYRAC 1 cut(s) 179
HindII GTYRAC 1 cut(s) 179
HinfI GANTC 1 cut(s) 249
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 2 cut(s) 179, 411
Hpy188I TCNGA 3 cut(s) 22, 232, 396
Hpy188III TCNNGA 1 cut(s) 188
Hpy8I GTNNAC 2 cut(s) 179, 411
HpyAV CCTTC 2 cut(s) 17, 239
HpyCH4III ACNGT 3 cut(s) 76, 168, 176
HpyCH4V TGCA 3 cut(s) 35, 147, 368
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpyF3I CTNAG 2 cut(s) 123, 414
Hsp92II CATG 4 cut(s) 131, 199, 242, 404
Kzo9I GATC 2 cut(s) 4, 337
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 6 cut(s) 51, 85, 315, 318, 348, 391
Lsp1109I GCAGC 2 cut(s) 344, 352
MaeI CTAG 1 cut(s) 161
MalI GATC 2 cut(s) 6, 339
MboI GATC 2 cut(s) 4, 337
MboII GAAGA 2 cut(s) 254, 282
MluCI AATT 3 cut(s) 111, 132, 284
MnlI CCTC 7 cut(s) 77, 118, 132, 266, 306, 330, 371
MslI CAYNNNNRTG 1 cut(s) 345
MwoI GCNNNNNNNGC 1 cut(s) 144
NcoI CCATGG 1 cut(s) 195
NdeII GATC 2 cut(s) 4, 337
NlaIII CATG 4 cut(s) 131, 199, 242, 404
NlaIV GGNNCC 2 cut(s) 70, 278
NspI RCATGY 1 cut(s) 131
NspV TTCGAA 1 cut(s) 115
OliI CACNNNNGTG 1 cut(s) 345
PfeI GAWTC 1 cut(s) 249
PflMI CCANNNNNTGG 2 cut(s) 217, 286
PkrI GCNGC 2 cut(s) 359, 367
PspN4I GGNNCC 2 cut(s) 70, 278
PspPI GGNCC 1 cut(s) 332
PsrI GAACNNNNNNTAC 2 cut(s) 300, 332
RsaI GTAC 3 cut(s) 14, 309, 390
RsaNI GTAC 3 cut(s) 13, 308, 389
RseI CAYNNNNRTG 1 cut(s) 345
SatI GCNGC 2 cut(s) 358, 366
Sau3AI GATC 2 cut(s) 4, 337
Sau96I GGNCC 1 cut(s) 332
SetI ASST 3 cut(s) 18, 28, 124
SfuI TTCGAA 1 cut(s) 115
SinI GGWCC 1 cut(s) 332
SmiMI CAYNNNNRTG 1 cut(s) 345
Sse9I AATT 3 cut(s) 111, 132, 284
SspMI CTAG 1 cut(s) 161
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 3 cut(s) 76, 168, 176
TaqI TCGA 3 cut(s) 115, 171, 322
TasI AATT 3 cut(s) 111, 132, 284
TatI WGTACW 1 cut(s) 307
TfiI GAWTC 1 cut(s) 249
TscAI CASTG 1 cut(s) 79
TseI GCWGC 2 cut(s) 357, 365
TspDTI ATGAA 1 cut(s) 255
TspRI CASTG 1 cut(s) 79
Van91I CCANNNNNTGG 2 cut(s) 217, 286
VpaK11BI GGWCC 1 cut(s) 332
XceI RCATGY 1 cut(s) 131
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.