Rh7BG280100

Long-chain-alcohol oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0015043
Physical Location & Seq
Forward (+)
26067266 .. 26067829
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG280100.1

Sequence Viewer

Length: 564 bp
ATGGCATGGGGCTATTTTAATAATCCAGATTCACCTAATCTCTCTGAGAAAAAGAGCTACGAAGGAGGGATAATGACAGCAATGTCTACTGTCACTGCAGATTTTGACAGGTCTGGCTATGGAGCGTTGATACAAACACCTGCATTGCACCCTGGTATGTTCTCAATTGTAATGCCATGGATTTCAGGCAAAGATATAAAGCACCGAATGAGCAGGTTCTCTAAAACTGCCCATATATTTGCATTGGCAAGAGATAAAGGATCGGGGACAGTACTGACAAATGCACCAAACTCAGTCAGATATCAAATGGAACTCGTTGACGAAAACAATCTAAACAGGGGACTTGAGAAGTCATTGAGGATTTTGGCGGCAGCGGGAGCTGAAGAAATTGGAACCCATCATTTCAGAGGGAAGAGTTTAAATGTGAAGAAGGCAAGTTCTGGTGAGTTTGAGCAGTTTGTGAAAGAGGAGAGTTCGAGGCCATTAAGAGACATTGCATCTAGCATCTGCTCTGCCCATCAGATGGGAAGTTGCAGAATGGGAGTCAAAGCAAAGGGTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008152 GO:0016491 GO:0044464 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GMC_oxred_C GMC_oxred_N

Protein Analysis

187

Amino Acids

20.51

Weight (kDa)

9.54

Isoelectric Point (pI)

31.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015043)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19380 AT4G19380
malus_domestica MD16G1286200.v1.1
prunus_persica Prupe.5G013900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0215241
rosa_laevigata RLG00000002680
rosa_multiflora Rmu_co8143572.1_g000001 Rmu_co8276433.1_g000001
rosa_roxburghii Rroxscaffold_3G00244400
rosa_rugosa Rorug07G0151400
rosa_samantha Rh7AG288100 Rh7BG280000 Rh7BG280100 Rh7CG307900 Rh7DG291600
rosa_wichuraiana Rw7G024610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 148
AasI GACNNNNNNGTC 1 cut(s) 82
Acc36I ACCTGC 2 cut(s) 148, 204
AccB7I CCANNNNNTGG 1 cut(s) 523
AccI GTMKAC 1 cut(s) 86
AciI CCGC 2 cut(s) 368, 374
AclWI GGATC 1 cut(s) 268
AcuI CTGAAG 1 cut(s) 402
AfaI GTAC 1 cut(s) 273
AfiI CCNNNNNNNGG 1 cut(s) 523
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 2 cut(s) 57, 380
AluI AGCT 2 cut(s) 57, 380
Alw26I GTCTC 1 cut(s) 483
AlwI GGATC 1 cut(s) 268
AoxI GGCC 1 cut(s) 479
ApeKI GCWGC 1 cut(s) 371
AsuHPI GGTGA 2 cut(s) 24, 455
BbvI GCAGC 1 cut(s) 383
BccI CCATC 3 cut(s) 405, 517, 525
BciT130I CCWGG 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 483
BfaI CTAG 1 cut(s) 501
BfmI CTRYAG 1 cut(s) 96
BfuAI ACCTGC 2 cut(s) 148, 204
BisI GCNGC 2 cut(s) 369, 372
BlsI GCNGC 2 cut(s) 370, 373
BmcAI AGTACT 1 cut(s) 273
Bme1390I CCNGG 1 cut(s) 153
BmiI GGNNCC 1 cut(s) 394
BmrFI CCNGG 1 cut(s) 153
BmsI GCATC 2 cut(s) 506, 513
BpuEI CTTGAG 1 cut(s) 365
BsaJI CCNNGG 2 cut(s) 151, 176
Bsc4I CCNNNNNNNGG 1 cut(s) 523
Bse3DI GCAATG 3 cut(s) 87, 143, 492
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 2 cut(s) 151, 176
BseLI CCNNNNNNNGG 1 cut(s) 523
BseMI GCAATG 3 cut(s) 87, 143, 492
BseMII CTCAG 2 cut(s) 36, 306
BseRI GAGGAG 1 cut(s) 482
BseXI GCAGC 1 cut(s) 383
BshFI GGCC 1 cut(s) 481
BslFI GGGAC 2 cut(s) 280, 354
BslI CCNNNNNNNGG 1 cut(s) 523
BsmAI GTCTC 1 cut(s) 483
BsmFI GGGAC 2 cut(s) 280, 354
BsnI GGCC 1 cut(s) 481
Bsp143I GATC 1 cut(s) 260
Bsp19I CCATGG 1 cut(s) 176
BspACI CCGC 2 cut(s) 368, 374
BspANI GGCC 1 cut(s) 481
BspCNI CTCAG 2 cut(s) 37, 305
BspLI GGNNCC 1 cut(s) 394
BspMAI CTGCAG 1 cut(s) 100
BspMI ACCTGC 2 cut(s) 148, 204
BspPI GGATC 1 cut(s) 268
BsrDI GCAATG 3 cut(s) 87, 143, 492
BssECI CCNNGG 2 cut(s) 151, 176
BssMI GATC 1 cut(s) 260
BssT1I CCWWGG 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 2 cut(s) 91, 271
Bst6I CTCTTC 1 cut(s) 407
BstDEI CTNAG 2 cut(s) 45, 292
BstDSI CCRYGG 1 cut(s) 176
BstKTI GATC 1 cut(s) 263
BstMAI GTCTC 1 cut(s) 483
BstMBI GATC 1 cut(s) 260
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 151
BstSFI CTRYAG 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 383
BsuRI GGCC 1 cut(s) 481
BtgI CCRYGG 1 cut(s) 176
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 93
BveI ACCTGC 2 cut(s) 148, 204
Csp6I GTAC 1 cut(s) 272
CviAII CATG 2 cut(s) 6, 177
CviJI RGCY 5 cut(s) 12, 57, 117, 380, 481
CviKI_1 RGCY 5 cut(s) 12, 57, 117, 380, 481
CviQI GTAC 1 cut(s) 272
DdeI CTNAG 2 cut(s) 45, 292
DpnI GATC 1 cut(s) 262
DpnII GATC 1 cut(s) 260
DraI TTTAAA 1 cut(s) 420
DrdI GACNNNNNNGTC 1 cut(s) 82
DseDI GACNNNNNNGTC 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
Eco130I CCWWGG 1 cut(s) 176
Eco32I GATATC 1 cut(s) 302
Eco57I CTGAAG 1 cut(s) 402
EcoRII CCWGG 1 cut(s) 151
EcoRV GATATC 1 cut(s) 302
EcoT14I CCWWGG 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 176
FaeI CATG 2 cut(s) 9, 180
FaiI YATR 7 cut(s) 7, 120, 158, 178, 197, 234, 236
FaqI GGGAC 2 cut(s) 280, 354
FatI CATG 2 cut(s) 5, 176
FauI CCCGC 1 cut(s) 367
FblI GTMKAC 1 cut(s) 86
Fnu4HI GCNGC 2 cut(s) 369, 372
Fsp4HI GCNGC 2 cut(s) 369, 372
FspBI CTAG 1 cut(s) 501
GluI GCNGC 2 cut(s) 369, 372
HaeIII GGCC 1 cut(s) 481
Hin1II CATG 2 cut(s) 9, 180
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HinfI GANTC 2 cut(s) 29, 543
HphI GGTGA 2 cut(s) 24, 455
Hpy166II GTNNAC 2 cut(s) 87, 319
Hpy188I TCNGA 4 cut(s) 46, 299, 407, 522
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 2 cut(s) 87, 319
HpyAV CCTTC 2 cut(s) 56, 424
HpyCH4III ACNGT 2 cut(s) 91, 271
HpyCH4V TGCA 7 cut(s) 98, 143, 148, 242, 284, 497, 534
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 2 cut(s) 45, 292
Hsp92II CATG 2 cut(s) 9, 180
Kzo9I GATC 1 cut(s) 260
LmnI GCTCC 2 cut(s) 122, 377
Lsp1109I GCAGC 1 cut(s) 383
LweI GCATC 2 cut(s) 506, 513
MaeI CTAG 1 cut(s) 501
MaeIII GTNAC 1 cut(s) 91
MalI GATC 1 cut(s) 262
MboI GATC 1 cut(s) 260
MboII GAAGA 3 cut(s) 395, 424, 439
MfeI CAATTG 1 cut(s) 165
MluCI AATT 2 cut(s) 165, 387
MlyI GAGTC 1 cut(s) 552
MnlI CCTC 5 cut(s) 59, 351, 401, 460, 471
MseI TTAA 3 cut(s) 18, 419, 485
MspA1I CMGCKG 1 cut(s) 374
MspR9I CCNGG 1 cut(s) 153
MunI CAATTG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 377
NcoI CCATGG 1 cut(s) 176
NdeII GATC 1 cut(s) 260
NlaIII CATG 2 cut(s) 9, 180
NlaIV GGNNCC 1 cut(s) 394
NmuCI GTSAC 1 cut(s) 91
PaqCI CACCTGC 1 cut(s) 148
PfeI GAWTC 1 cut(s) 29
PflMI CCANNNNNTGG 1 cut(s) 523
PkrI GCNGC 2 cut(s) 370, 373
PleI GAGTC 1 cut(s) 551
PpsI GAGTC 1 cut(s) 551
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 394
PstI CTGCAG 1 cut(s) 100
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
SaqAI TTAA 3 cut(s) 18, 419, 485
SatI GCNGC 2 cut(s) 369, 372
Sau3AI GATC 1 cut(s) 260
ScaI AGTACT 1 cut(s) 273
SchI GAGTC 1 cut(s) 552
ScrFI CCNGG 1 cut(s) 153
SetI ASST 7 cut(s) 37, 59, 113, 142, 218, 382, 563
SfaNI GCATC 2 cut(s) 506, 513
SfcI CTRYAG 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 2 cut(s) 165, 387
SsiI CCGC 2 cut(s) 368, 374
SspMI CTAG 1 cut(s) 501
StyD4I CCNGG 1 cut(s) 151
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 2 cut(s) 91, 271
TaqI TCGA 1 cut(s) 476
TasI AATT 2 cut(s) 165, 387
TatI WGTACW 1 cut(s) 271
TauI GCSGC 1 cut(s) 371
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 3 cut(s) 18, 419, 485
Tru9I TTAA 3 cut(s) 18, 419, 485
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 1 cut(s) 371
Tsp45I GTSAC 1 cut(s) 91
TspRI CASTG 1 cut(s) 100
Van91I CCANNNNNTGG 1 cut(s) 523
XmiI GTMKAC 1 cut(s) 86
XspI CTAG 1 cut(s) 501
ZrmI AGTACT 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.