Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8276433.1

Orthogroup ID

OG0015043

Physical Location & Seq

Genomic Coordinates Forward (+)

93 .. 824

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8276433.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atggcatggggctattttaataatccagattcacctaatctctctgagaaaaagagctacgaaggagggataatgacagcaatgtctactgtcactgcagattttgacaagtctggctatggagcgttgatacaaacacctgcattgcaccctggtatgttctcaattgtaatgccatggatttcaggcaaagatataaagcaccgaatgagcaagttctctaaaactgcccatatatttgcattggcaagagataaaggatcgggcacagtactaacaaatgcaccaaactcagtcagctatcaaatggaacccgttgacgaaaacaatctaaacagaggacttgagaagtcattgaggattttggcggcagcgggagctgaagaaattggaacccatcatttcaaagggaagagtttaaacgtgaagaaggcaagttctggtgaatttgagcagtttgtgaaagaggagagttcgaggccattaagagacatttcatctagcatctgctctgcgcatcagatgggaagttgcagaatgggagtcaacgcaaaagggtcggtagtcaaccagatgggagagacgtgggaagttgagggactatttgtagcagactcgagtgttttcccaacggctttgggagtcaatcctatggttactgttcagtgtattgcttactgcactgcgcaatctgttattcaagtgcttcagagaagaaagccggatgtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008152 GO:0016491 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

243

Amino Acids

26.39

Weight (kDa)

8.3

Isoelectric Point (pI)

31.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19380 AT4G19380
malus_domestica	MD16G1286200.v1.1
prunus_persica	Prupe.5G013900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0215241
rosa_laevigata	RLG00000002680
rosa_multiflora	Rmu_co8143572.1_g000001 Rmu_co8276433.1_g000001
rosa_roxburghii	Rroxscaffold_3G00244400
rosa_rugosa	Rorug07G0151400
rosa_samantha	Rh7AG288100 Rh7BG280000 Rh7BG280100 Rh7CG307900 Rh7DG291600
rosa_wichuraiana	Rw7G024610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	148
AasI	GACNNNNNNGTC	1 cut(s)	82
Acc16I	TGCGCA	2 cut(s)	516, 687
Acc36I	ACCTGC	1 cut(s)	148
AccI	GTMKAC	1 cut(s)	86
AciI	CCGC	2 cut(s)	368, 374
AclWI	GGATC	1 cut(s)	268
AcsI	RAATTY	1 cut(s)	446
AcuI	CTGAAG	2 cut(s)	402, 692
AfaI	GTAC	1 cut(s)	273
AgsI	TTSAA	2 cut(s)	406, 701
AjiI	CACGTC	1 cut(s)	585
AjnI	CCWGG	1 cut(s)	151
AluBI	AGCT	3 cut(s)	57, 300, 380
AluI	AGCT	3 cut(s)	57, 300, 380
Alw26I	GTCTC	2 cut(s)	483, 575
AlwI	GGATC	1 cut(s)	268
Ama87I	CYCGRG	1 cut(s)	616
AoxI	GGCC	1 cut(s)	479
ApeKI	GCWGC	1 cut(s)	371
ApoI	RAATTY	1 cut(s)	446
AspLEI	GCGC	2 cut(s)	517, 688
AsuHPI	GGTGA	2 cut(s)	24, 455
AvaI	CYCGRG	1 cut(s)	616
BaeGI	GKGCMC	1 cut(s)	269
BbvI	GCAGC	1 cut(s)	383
BccI	CCATC	3 cut(s)	405, 517, 568
BceAI	ACGGC	1 cut(s)	648
BcgI	CGANNNNNNTGC	2 cut(s)	540, 574
BciT130I	CCWGG	1 cut(s)	153
BcoDI	GTCTC	2 cut(s)	483, 575
BfaI	CTAG	1 cut(s)	501
BfmI	CTRYAG	1 cut(s)	96
BfuAI	ACCTGC	1 cut(s)	148
BisI	GCNGC	2 cut(s)	369, 372
BlsI	GCNGC	2 cut(s)	370, 373
BmcAI	AGTACT	1 cut(s)	273
Bme1390I	CCNGG	1 cut(s)	153
BmeT110I	CYCGRG	1 cut(s)	616
BmgBI	CACGTC	1 cut(s)	585
BmiI	GGNNCC	2 cut(s)	312, 394
BmrFI	CCNGG	1 cut(s)	153
BmsI	GCATC	2 cut(s)	513, 526
BpuEI	CTTGAG	1 cut(s)	365
BsaJI	CCNNGG	2 cut(s)	151, 176
Bse3DI	GCAATG	2 cut(s)	87, 143
BseBI	CCWGG	1 cut(s)	153
BseDI	CCNNGG	2 cut(s)	151, 176
BseGI	GGATG	1 cut(s)	730
BseMI	GCAATG	2 cut(s)	87, 143
BseMII	CTCAG	2 cut(s)	36, 306
BseRI	GAGGAG	1 cut(s)	482
BseSI	GKGCMC	1 cut(s)	269
BseXI	GCAGC	1 cut(s)	383
BsgI	GTGCAG	1 cut(s)	664
BshFI	GGCC	1 cut(s)	481
BsiHKCI	CYCGRG	1 cut(s)	616
BsiSI	CCGG	1 cut(s)	722
BslFI	GGGAC	1 cut(s)	612
BsmAI	GTCTC	2 cut(s)	483, 575
BsmBI	CGTCTC	1 cut(s)	575
BsmFI	GGGAC	1 cut(s)	612
BsnI	GGCC	1 cut(s)	481
BsoBI	CYCGRG	1 cut(s)	616
Bsp1286I	GDGCHC	1 cut(s)	269
Bsp143I	GATC	1 cut(s)	260
Bsp19I	CCATGG	1 cut(s)	176
BspACI	CCGC	2 cut(s)	368, 374
BspANI	GGCC	1 cut(s)	481
BspCNI	CTCAG	2 cut(s)	37, 305
BspLI	GGNNCC	2 cut(s)	312, 394
BspMAI	CTGCAG	1 cut(s)	100
BspMI	ACCTGC	1 cut(s)	148
BspPI	GGATC	1 cut(s)	268
BsrDI	GCAATG	2 cut(s)	87, 143
BssECI	CCNNGG	2 cut(s)	151, 176
BssMI	GATC	1 cut(s)	260
BssT1I	CCWWGG	1 cut(s)	176
Bst2UI	CCWGG	1 cut(s)	153
Bst4CI	ACNGT	3 cut(s)	91, 271, 661
Bst6I	CTCTTC	1 cut(s)	407
BstDEI	CTNAG	2 cut(s)	45, 292
BstDSI	CCRYGG	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	730
BstHHI	GCGC	2 cut(s)	517, 688
BstKTI	GATC	1 cut(s)	263
BstMAI	GTCTC	2 cut(s)	483, 575
BstMBI	GATC	1 cut(s)	260
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstNI	CCWGG	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	151
BstSFI	CTRYAG	1 cut(s)	96
BstSLI	GKGCMC	1 cut(s)	269
BstV1I	GCAGC	1 cut(s)	383
BsuRI	GGCC	1 cut(s)	481
BtgI	CCRYGG	1 cut(s)	176
BtrI	CACGTC	1 cut(s)	585
BtsCI	GGATG	1 cut(s)	730
BtsI	GCAGTG	2 cut(s)	93, 681
BtsIMutI	CAGTG	3 cut(s)	93, 671, 681
BveI	ACCTGC	1 cut(s)	148
CfoI	GCGC	2 cut(s)	517, 688
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	2 cut(s)	6, 177
CviJI	RGCY	8 cut(s)	12, 57, 117, 300, 380, 481, 635, 721
CviKI_1	RGCY	8 cut(s)	12, 57, 117, 300, 380, 481, 635, 721
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	2 cut(s)	45, 292
DpnI	GATC	1 cut(s)	262
DpnII	GATC	1 cut(s)	260
DraI	TTTAAA	1 cut(s)	420
DrdI	GACNNNNNNGTC	1 cut(s)	82
DseDI	GACNNNNNNGTC	1 cut(s)	82
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
Eco130I	CCWWGG	1 cut(s)	176
Eco57I	CTGAAG	2 cut(s)	402, 692
Eco88I	CYCGRG	1 cut(s)	616
EcoRII	CCWGG	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	176
Esp3I	CGTCTC	1 cut(s)	575
FaeI	CATG	2 cut(s)	9, 180
FaiI	YATR	9 cut(s)	7, 120, 158, 178, 197, 234, 236, 653, 730
FaqI	GGGAC	1 cut(s)	612
FatI	CATG	2 cut(s)	5, 176
FauI	CCCGC	1 cut(s)	367
FblI	GTMKAC	1 cut(s)	86
Fnu4HI	GCNGC	2 cut(s)	369, 372
Fsp4HI	GCNGC	2 cut(s)	369, 372
FspBI	CTAG	1 cut(s)	501
FspI	TGCGCA	2 cut(s)	516, 687
GlaI	GCGC	2 cut(s)	516, 687
GluI	GCNGC	2 cut(s)	369, 372
HaeIII	GGCC	1 cut(s)	481
HapII	CCGG	1 cut(s)	722
HhaI	GCGC	2 cut(s)	517, 688
Hin1II	CATG	2 cut(s)	9, 180
Hin6I	GCGC	2 cut(s)	515, 686
HinP1I	GCGC	2 cut(s)	515, 686
HincII	GTYRAC	3 cut(s)	319, 547, 568
HindII	GTYRAC	3 cut(s)	319, 547, 568
HinfI	GANTC	4 cut(s)	29, 543, 614, 642
HpaII	CCGG	1 cut(s)	722
HphI	GGTGA	2 cut(s)	24, 455
Hpy166II	GTNNAC	4 cut(s)	87, 319, 547, 568
Hpy188I	TCNGA	3 cut(s)	46, 522, 711
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	4 cut(s)	87, 319, 547, 568
HpyAV	CCTTC	2 cut(s)	56, 424
HpyCH4III	ACNGT	3 cut(s)	91, 271, 661
HpyCH4IV	ACGT	2 cut(s)	423, 584
HpyCH4V	TGCA	7 cut(s)	98, 143, 148, 242, 284, 534, 681
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpyF3I	CTNAG	2 cut(s)	45, 292
HpySE526I	ACGT	2 cut(s)	423, 584
Hsp92II	CATG	2 cut(s)	9, 180
HspAI	GCGC	2 cut(s)	515, 686
Kzo9I	GATC	1 cut(s)	260
LmnI	GCTCC	2 cut(s)	122, 377
LpnPI	CCDG	8 cut(s)	39, 99, 138, 153, 165, 171, 426, 584
Lsp1109I	GCAGC	1 cut(s)	383
LweI	GCATC	2 cut(s)	513, 526
MaeI	CTAG	1 cut(s)	501
MaeII	ACGT	2 cut(s)	423, 584
MaeIII	GTNAC	2 cut(s)	91, 655
MalI	GATC	1 cut(s)	262
MboI	GATC	1 cut(s)	260
MboII	GAAGA	4 cut(s)	395, 424, 439, 726
MfeI	CAATTG	1 cut(s)	165
MhlI	GDGCHC	1 cut(s)	269
MluCI	AATT	3 cut(s)	165, 387, 446
MlyI	GAGTC	3 cut(s)	552, 608, 651
MnlI	CCTC	6 cut(s)	59, 332, 351, 460, 471, 589
MseI	TTAA	3 cut(s)	18, 419, 485
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	1 cut(s)	722
MspR9I	CCNGG	1 cut(s)	153
MssI	GTTTAAAC	1 cut(s)	420
MunI	CAATTG	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	377
NcoI	CCATGG	1 cut(s)	176
NdeII	GATC	1 cut(s)	260
NlaIII	CATG	2 cut(s)	9, 180
NlaIV	GGNNCC	2 cut(s)	312, 394
NmuCI	GTSAC	1 cut(s)	91
NsbI	TGCGCA	2 cut(s)	516, 687
PaeR7I	CTCGAG	1 cut(s)	616
PaqCI	CACCTGC	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	370, 373
PleI	GAGTC	3 cut(s)	551, 608, 650
PmeI	GTTTAAAC	1 cut(s)	420
PpsI	GAGTC	3 cut(s)	551, 608, 650
Psp6I	CCWGG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	151
PspN4I	GGNNCC	2 cut(s)	312, 394
PspXI	VCTCGAGB	1 cut(s)	616
PstI	CTGCAG	1 cut(s)	100
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
SaqAI	TTAA	3 cut(s)	18, 419, 485
SatI	GCNGC	2 cut(s)	369, 372
Sau3AI	GATC	1 cut(s)	260
ScaI	AGTACT	1 cut(s)	273
SchI	GAGTC	3 cut(s)	552, 608, 651
ScrFI	CCNGG	1 cut(s)	153
SduI	GDGCHC	1 cut(s)	269
SetI	ASST	7 cut(s)	37, 59, 142, 302, 382, 426, 587
SfaNI	GCATC	2 cut(s)	513, 526
SfcI	CTRYAG	1 cut(s)	96
Sfr274I	CTCGAG	1 cut(s)	616
SlaI	CTCGAG	1 cut(s)	616
SmlI	CTYRAG	2 cut(s)	344, 616
SmoI	CTYRAG	2 cut(s)	344, 616
Sse9I	AATT	3 cut(s)	165, 387, 446
SsiI	CCGC	2 cut(s)	368, 374
SspMI	CTAG	1 cut(s)	501
StyD4I	CCNGG	1 cut(s)	151
StyI	CCWWGG	1 cut(s)	176
TaaI	ACNGT	3 cut(s)	91, 271, 661
TaiI	ACGT	2 cut(s)	426, 587
TaqI	TCGA	2 cut(s)	476, 617
TasI	AATT	3 cut(s)	165, 387, 446
TatI	WGTACW	1 cut(s)	271
TauI	GCSGC	1 cut(s)	371
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	3 cut(s)	18, 419, 485
Tru9I	TTAA	3 cut(s)	18, 419, 485
TscAI	CASTG	3 cut(s)	100, 671, 688
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	1 cut(s)	371
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	1 cut(s)	486
TspRI	CASTG	3 cut(s)	100, 671, 688
XapI	RAATTY	1 cut(s)	446
XhoI	CTCGAG	1 cut(s)	616
XmiI	GTMKAC	1 cut(s)	86
XspI	CTAG	1 cut(s)	501
ZrmI	AGTACT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.