Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0013705

Physical Location & Seq

Genomic Coordinates Reverse (-)

2202302 .. 2204699

Gene Structure 2398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1030400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCTGTCTCTGTCTGGGCAGTGTCCTCCATTTCCAGATTTCCAGTACCAAAAGCTTTCCAAGTTCATGAGAACAAGAAGCCCATCTGGAGAATCCGATGTAAGAAAGAGGGAGCAGAGGAAATGGCAACGGGAAAGAATTACTATGAATTGCTCGGTGTTTCGGTTGATTCAAATCCGAAGAAAATCAGACAAGCTTATAGGAAATTGCAGAAGAAATATCACCCAGATGTTGCAGGCCAAGAGGGGCACGAGTATACGCTAAAGTTGAATGAAGCGTACAAAGTTCTGATGAGAGAGAATCTGAGGAAGGAATACGATGCATCCATTGGTAAAGTCAGAGTAGCTGGATTCAGAGCAGGAAACACACCATCGTCAAGCTTAGGTTCTTCATGGAACGGACCTTTCAGACCCCAAGCTCTCTTTGTTGACGAAAATGCCTGCATAGGTTGCAGAGAATGTGTGCACCATGCAAGTAGCACCTTCATGTTTGATGATGCTCTCGGATGTGCTAGGGTTAAAGTTCAATATGGCGACGATGAACAAAAGATTGAGGTATCAGTAGATTCGTGCCCTGTGAACTGCATTCATTGGGTGGAGAAGGAAGAGCTGCCGGTGCTTGAGTTCCTGATTCAGCCTCAGCCGACGGAAGGGTATGGCATATTCGGAGGAGGGTGGGAAAGACCTGCAAATGTTTTCATGGCTGCTAAATCCTACAATAAACAACAACAAAGATGGCAGGAGGAAGCCGAAAATGAAAACAATCCAAGAAAATCGCGTGCGACTGCTGAAGAAGAAACCCCTGCACAAGCCAAGGCTCGGGAGGACGCGAGTAGGAAGATAAACATGGAAGGGTTCTCAAGATTCTGGCAATGGCAAAACAAGCCTTTCTGGGGCAAAAAGGGGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ Fer4_13 Fer4_15

Protein Analysis

304

Amino Acids

34.62

Weight (kDa)

8.7

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	47 - 107	3.6e-16	DnaJ domain
Fer4_15	PF13459	142 - 198	3.5e-07	4Fe-4S single cluster domain
Fer4_13	PF13370	143 - 198	3.5e-11	4Fe-4S single cluster domain of Ferredoxin I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013705)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g51170
malus_domestica	MD17G1030400.v1.1
prunus_persica	Prupe.3G207200_v2.0.a1 Prupe.3G289400_v2.0.a1 Prupe.3G289400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0172761
rosa_laevigata	RLG00000022131
rosa_multiflora	Rmu_sc0010744.1_g000004
rosa_roxburghii	Rroxscaffold_2G00079460 Rroxscaffold_2G00079550
rosa_rugosa	Rorug02G0561300 Rorug02G0561400 Rorug02G0562900
rosa_samantha	Rh2AG638600 Rh2BG652100 Rh2CG618400 Rh2DG666200
rosa_wichuraiana	Rw2G052750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	694
AccI	GTMKAC	1 cut(s)	257
AccII	CGCG	2 cut(s)	778, 830
AcuI	CTGAAG	1 cut(s)	810
AfaI	GTAC	2 cut(s)	48, 281
AfiI	CCNNNNNNNGG	3 cut(s)	650, 819, 893
AgsI	TTSAA	3 cut(s)	174, 271, 527
AluBI	AGCT	6 cut(s)	56, 197, 347, 381, 419, 610
AluI	AGCT	6 cut(s)	56, 197, 347, 381, 419, 610
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	1 cut(s)	13
Alw44I	GTGCAC	1 cut(s)	464
Ama87I	CYCGRG	1 cut(s)	819
AoxI	GGCC	1 cut(s)	238
ApaLI	GTGCAC	1 cut(s)	464
ApeKI	GCWGC	2 cut(s)	610, 704
AspS9I	GGNCC	1 cut(s)	401
AsuHPI	GGTGA	1 cut(s)	215
AvaI	CYCGRG	1 cut(s)	819
AvaII	GGWCC	1 cut(s)	401
BaeGI	GKGCMC	3 cut(s)	252, 468, 575
BauI	CACGAG	1 cut(s)	251
Bbv12I	GWGCWC	1 cut(s)	468
BbvCI	CCTCAGC	1 cut(s)	639
BbvI	GCAGC	2 cut(s)	597, 691
BccI	CCATC	3 cut(s)	92, 379, 729
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	1 cut(s)	513
BfuAI	ACCTGC	1 cut(s)	694
BisI	GCNGC	2 cut(s)	611, 705
BlsI	GCNGC	2 cut(s)	612, 706
Bme18I	GGWCC	1 cut(s)	401
BmeT110I	CYCGRG	1 cut(s)	819
BmgT120I	GGNCC	1 cut(s)	401
BmsI	GCATC	3 cut(s)	310, 332, 487
BpmI	CTGGAG	1 cut(s)	109
Bpu10I	CCTNAGC	2 cut(s)	382, 639
BpuEI	CTTGAG	2 cut(s)	641, 844
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	813
Bsc4I	CCNNNNNNNGG	3 cut(s)	650, 819, 893
Bse118I	RCCGGY	1 cut(s)	613
Bse1I	ACTGG	1 cut(s)	44
Bse3DI	GCAATG	1 cut(s)	878
Bse8I	GATNNNNATC	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	813
BseGI	GGATG	2 cut(s)	323, 512
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	3 cut(s)	650, 819, 893
BseMI	GCAATG	1 cut(s)	878
BseMII	CTCAG	2 cut(s)	296, 653
BseNI	ACTGG	1 cut(s)	44
BseRI	GAGGAG	1 cut(s)	684
BseSI	GKGCMC	3 cut(s)	252, 468, 575
BseXI	GCAGC	2 cut(s)	597, 691
BsgI	GTGCAG	1 cut(s)	789
Bsh1236I	CGCG	2 cut(s)	778, 830
BshFI	GGCC	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	468
BsiHKCI	CYCGRG	1 cut(s)	819
BsiSI	CCGG	1 cut(s)	614
BslI	CCNNNNNNNGG	3 cut(s)	650, 819, 893
BsmAI	GTCTC	1 cut(s)	13
BsmI	GAATGC	1 cut(s)	585
BsnI	GGCC	1 cut(s)	240
BsoBI	CYCGRG	1 cut(s)	819
Bsp1286I	GDGCHC	3 cut(s)	252, 468, 575
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	2 cut(s)	297, 652
BspFNI	CGCG	2 cut(s)	778, 830
BspHI	TCATGA	1 cut(s)	67
BspMI	ACCTGC	1 cut(s)	694
BspQI	GCTCTTC	1 cut(s)	600
BsrDI	GCAATG	1 cut(s)	878
BsrFI	RCCGGY	1 cut(s)	613
BsrI	ACTGG	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	613
BssECI	CCNNGG	1 cut(s)	813
BssNAI	GTATAC	1 cut(s)	258
BssSI	CACGAG	1 cut(s)	251
BssT1I	CCWWGG	1 cut(s)	813
Bst1107I	GTATAC	1 cut(s)	258
Bst2BI	CACGAG	1 cut(s)	251
Bst6I	CTCTTC	1 cut(s)	600
BstAPI	GCANNNNNTGC	1 cut(s)	450
BstC8I	GCNNGC	3 cut(s)	238, 442, 780
BstDEI	CTNAG	3 cut(s)	305, 382, 639
BstF5I	GGATG	2 cut(s)	323, 512
BstFNI	CGCG	2 cut(s)	778, 830
BstMAI	GTCTC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	3 cut(s)	450, 616, 883
BstSLI	GKGCMC	3 cut(s)	252, 468, 575
BstUI	CGCG	2 cut(s)	778, 830
BstV1I	GCAGC	2 cut(s)	597, 691
BstZ17I	GTATAC	1 cut(s)	258
BsuRI	GGCC	1 cut(s)	240
BtsCI	GGATG	2 cut(s)	323, 512
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	27
BveI	ACCTGC	1 cut(s)	694
Cac8I	GCNNGC	3 cut(s)	238, 442, 780
CciI	TCATGA	1 cut(s)	67
Cfr10I	RCCGGY	1 cut(s)	613
Cfr13I	GGNCC	1 cut(s)	401
CseI	GACGC	1 cut(s)	836
Csp6I	GTAC	2 cut(s)	47, 280
CviAII	CATG	6 cut(s)	68, 393, 470, 487, 700, 847
CviQI	GTAC	2 cut(s)	47, 280
DdeI	CTNAG	3 cut(s)	305, 382, 639
Eam1104I	CTCTTC	1 cut(s)	600
EarI	CTCTTC	1 cut(s)	600
Eco130I	CCWWGG	1 cut(s)	813
Eco47I	GGWCC	1 cut(s)	401
Eco57I	CTGAAG	1 cut(s)	810
Eco88I	CYCGRG	1 cut(s)	819
EcoT14I	CCWWGG	1 cut(s)	813
EcoT22I	ATGCAT	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	813
FaeI	CATG	6 cut(s)	71, 396, 473, 490, 703, 850
FatI	CATG	6 cut(s)	67, 392, 469, 486, 699, 846
FblI	GTMKAC	1 cut(s)	257
Fnu4HI	GCNGC	2 cut(s)	611, 705
FokI	GGATG	2 cut(s)	310, 519
Fsp4HI	GCNGC	2 cut(s)	611, 705
FspBI	CTAG	1 cut(s)	513
GluI	GCNGC	2 cut(s)	611, 705
GsuI	CTGGAG	1 cut(s)	109
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	1 cut(s)	614
HgaI	GACGC	1 cut(s)	836
Hin1II	CATG	6 cut(s)	71, 396, 473, 490, 703, 850
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HindIII	AAGCTT	3 cut(s)	54, 195, 379
HinfI	GANTC	7 cut(s)	93, 170, 301, 351, 566, 631, 864
HpaII	CCGG	1 cut(s)	614
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	4 cut(s)	258, 430, 466, 580
Hpy188III	TCNNGA	6 cut(s)	36, 68, 88, 628, 821, 861
Hpy8I	GTNNAC	4 cut(s)	258, 430, 466, 580
Hpy99I	CGWCG	2 cut(s)	539, 649
HpyAV	CCTTC	5 cut(s)	304, 493, 595, 644, 845
HpyF10VI	GCNNNNNNNGC	3 cut(s)	450, 616, 883
HpyF3I	CTNAG	3 cut(s)	305, 382, 639
Hsp92II	CATG	6 cut(s)	71, 396, 473, 490, 703, 850
LguI	GCTCTTC	1 cut(s)	600
LmnI	GCTCC	1 cut(s)	113
Lsp1109I	GCAGC	2 cut(s)	597, 691
LweI	GCATC	3 cut(s)	310, 332, 487
MaeI	CTAG	1 cut(s)	513
MboII	GAAGA	7 cut(s)	193, 226, 381, 617, 803, 806, 850
MhlI	GDGCHC	3 cut(s)	252, 468, 575
MluCI	AATT	3 cut(s)	139, 149, 206
Mph1103I	ATGCAT	1 cut(s)	325
MseI	TTAA	1 cut(s)	519
MslI	CAYNNNNRTG	2 cut(s)	228, 485
MspI	CCGG	1 cut(s)	614
Mva1269I	GAATGC	1 cut(s)	585
MvnI	CGCG	2 cut(s)	778, 830
MwoI	GCNNNNNNNGC	3 cut(s)	450, 616, 883
NlaIII	CATG	6 cut(s)	71, 396, 473, 490, 703, 850
NsiI	ATGCAT	1 cut(s)	325
PagI	TCATGA	1 cut(s)	67
PciSI	GCTCTTC	1 cut(s)	600
PctI	GAATGC	1 cut(s)	585
PfeI	GAWTC	7 cut(s)	93, 170, 301, 351, 566, 631, 864
PkrI	GCNGC	2 cut(s)	612, 706
PspPI	GGNCC	1 cut(s)	401
RsaI	GTAC	2 cut(s)	48, 281
RsaNI	GTAC	2 cut(s)	47, 280
RseI	CAYNNNNRTG	2 cut(s)	228, 485
SapI	GCTCTTC	1 cut(s)	600
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	2 cut(s)	611, 705
Sau96I	GGNCC	1 cut(s)	401
SduI	GDGCHC	3 cut(s)	252, 468, 575
SfaNI	GCATC	3 cut(s)	310, 332, 487
SinI	GGWCC	1 cut(s)	401
SmiMI	CAYNNNNRTG	2 cut(s)	228, 485
SmlI	CTYRAG	2 cut(s)	620, 859
SmoI	CTYRAG	2 cut(s)	620, 859
Sse9I	AATT	3 cut(s)	139, 149, 206
SspMI	CTAG	1 cut(s)	513
StyI	CCWWGG	1 cut(s)	813
TasI	AATT	3 cut(s)	139, 149, 206
TfiI	GAWTC	7 cut(s)	93, 170, 301, 351, 566, 631, 864
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	1 cut(s)	27
TseI	GCWGC	2 cut(s)	610, 704
TspDTI	ATGAA	9 cut(s)	56, 162, 288, 381, 475, 555, 578, 688, 771
TspGWI	ACGGA	2 cut(s)	414, 662
TspRI	CASTG	1 cut(s)	27
VneI	GTGCAC	1 cut(s)	464
VpaK11BI	GGWCC	1 cut(s)	401
XmiI	GTMKAC	1 cut(s)	257
XspI	CTAG	1 cut(s)	513
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.