Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013705

Physical Location & Seq

Genomic Coordinates Forward (+)

26014405 .. 26016371

Gene Structure 1967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G289400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGTCTGTCTCTGCAGTCTCAATTTCCCAATTTTCACTACCAAAAGCTTTCCAAGTTGAGGACCATTTCACCGCAATAAGCAAGCCCATCTGGAGATGGAGGAGGCAGGGATGCCCTGCAAGCAGATTCAGATGTGGTAAGAGAGAGGCATGGAAAATGAAAGCAACAAACATGGGAAAAAATTACTATGAATTGCTTGGTGTTTCTGTTGATTCGAATGCGCAGAAAATTAAACAGGCTTATAGGAATTTGCAGAAGAAGTACCACCCAGATGTTGCAGGACAAGAGGGTCACGAGTATACCCTCAAGCTGAATGAAGCTTATAAGGTTCTGATGAGAGAGAATCTAAGGAAAGAATATGATGCTTCCATTGGTGAAATGAGAGGAAATTACAGCTCATCAAGCTTAGGTCGCACTTCTTCATGGAATGGACCTTTGAGACCCCAAGGTCTATTTGTTGATGAAAATGCATGCATAGGTTGCAGAGAATGCGTGCACCATGCAAGTAGCACCTTCATATTTGATGAGGCTCTCGGATGTGCTAGGGTTAAACTTCAATATGGTGACGATGAACAAAAGATTGAGGTATCAGTTGATTCATGCCCTGTGAACTGCATTCATTGGGTGGAGAATGAAGAACTGCCAGTGCTTGAATTCCTGATTCAGCCTCAGCCAAAGGAAGGGTTTGGGATATTCGGAGGAGGCTGGGAAAGACCTGCAAATGTTTTCATGGCTGCTAAATCATTCAATAAACAAACTCACAATGAAAACCATGGAAGAAATTCACGTGCGTCGACTGTTGAAGAAGAAGAAACCCCTGCTCAAGCCAAGGCTCGAGCTGACGCAAGTAGGAAAATAAACATGGAAGCTGCATCAGGATTATTCTCAAGATTCTGGCAATGGCAAAATAAGCCTTTTTGGGGCGAAAAGGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ Fer4_13 Fer4_15

Protein Analysis

313

Amino Acids

35.56

Weight (kDa)

8.34

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013705)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g51170
malus_domestica	MD17G1030400.v1.1
prunus_persica	Prupe.3G207200_v2.0.a1 Prupe.3G289400_v2.0.a1 Prupe.3G289400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0172761
rosa_laevigata	RLG00000022131
rosa_multiflora	Rmu_sc0010744.1_g000004
rosa_roxburghii	Rroxscaffold_2G00079460 Rroxscaffold_2G00079550
rosa_rugosa	Rorug02G0561300 Rorug02G0561400 Rorug02G0562900
rosa_samantha	Rh2AG638600 Rh2BG652100 Rh2CG618400 Rh2DG666200
rosa_wichuraiana	Rw2G052750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	324
AasI	GACNNNNNNGTC	2 cut(s)	288, 447
Acc16I	TGCGCA	1 cut(s)	222
Acc36I	ACCTGC	1 cut(s)	724
AccI	GTMKAC	2 cut(s)	299, 794
AciI	CCGC	1 cut(s)	72
AcsI	RAATTY	3 cut(s)	247, 653, 781
AcvI	CACGTG	1 cut(s)	788
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	3 cut(s)	58, 680, 920
AgsI	TTSAA	4 cut(s)	557, 653, 748, 803
AluBI	AGCT	7 cut(s)	47, 310, 320, 396, 405, 839, 869
AluI	AGCT	7 cut(s)	47, 310, 320, 396, 405, 839, 869
Alw21I	GWGCWC	1 cut(s)	498
Alw26I	GTCTC	3 cut(s)	13, 22, 433
Alw44I	GTGCAC	1 cut(s)	494
Ama87I	CYCGRG	1 cut(s)	834
ApaLI	GTGCAC	1 cut(s)	494
ApeKI	GCWGC	2 cut(s)	734, 869
ApoI	RAATTY	3 cut(s)	247, 653, 781
Asp700I	GAANNNNTTC	1 cut(s)	781
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	2 cut(s)	61, 431
AsuHPI	GGTGA	3 cut(s)	61, 386, 575
AsuII	TTCGAA	1 cut(s)	215
AvaI	CYCGRG	1 cut(s)	834
AvaII	GGWCC	2 cut(s)	61, 431
BaeGI	GKGCMC	1 cut(s)	498
BauI	CACGAG	1 cut(s)	293
BbrPI	CACGTG	1 cut(s)	788
Bbv12I	GWGCWC	1 cut(s)	498
BbvCI	CCTCAGC	1 cut(s)	669
BbvI	GCAGC	2 cut(s)	721, 856
BccI	CCATC	2 cut(s)	90, 95
BcoDI	GTCTC	3 cut(s)	13, 22, 433
BfaI	CTAG	1 cut(s)	543
BfmI	CTRYAG	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	724
BisI	GCNGC	2 cut(s)	735, 870
BlsI	GCNGC	2 cut(s)	736, 871
Bme18I	GGWCC	2 cut(s)	61, 431
BmeT110I	CYCGRG	1 cut(s)	834
BmgT120I	GGNCC	2 cut(s)	61, 431
BmsI	GCATC	3 cut(s)	101, 352, 881
BpmI	CTGGAG	1 cut(s)	112
Bpu10I	CCTNAGC	2 cut(s)	406, 669
Bpu14I	TTCGAA	1 cut(s)	215
BpuEI	CTTGAG	3 cut(s)	290, 807, 871
BsaAI	YACGTR	1 cut(s)	788
BsaI	GGTCTC	1 cut(s)	433
BsaJI	CCNNGG	3 cut(s)	445, 772, 828
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 680, 920
Bse1I	ACTGG	1 cut(s)	644
Bse3DI	GCAATG	1 cut(s)	905
BseDI	CCNNGG	3 cut(s)	445, 772, 828
BseGI	GGATG	2 cut(s)	116, 542
BseLI	CCNNNNNNNGG	3 cut(s)	58, 680, 920
BseMI	GCAATG	1 cut(s)	905
BseMII	CTCAG	1 cut(s)	683
BseNI	ACTGG	1 cut(s)	644
BseRI	GAGGAG	2 cut(s)	115, 714
BseSI	GKGCMC	1 cut(s)	498
BseXI	GCAGC	2 cut(s)	721, 856
BseYI	CCCAGC	1 cut(s)	705
BsiHKAI	GWGCWC	1 cut(s)	498
BsiHKCI	CYCGRG	1 cut(s)	834
BslI	CCNNNNNNNGG	3 cut(s)	58, 680, 920
BsmAI	GTCTC	3 cut(s)	13, 22, 433
BsmI	GAATGC	3 cut(s)	223, 494, 615
Bso31I	GGTCTC	1 cut(s)	433
BsoBI	CYCGRG	1 cut(s)	834
Bsp119I	TTCGAA	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	498
Bsp19I	CCATGG	1 cut(s)	772
BspACI	CCGC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	682
BspMAI	CTGCAG	1 cut(s)	16
BspMI	ACCTGC	1 cut(s)	724
BspT104I	TTCGAA	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	433
BsrDI	GCAATG	1 cut(s)	905
BsrI	ACTGG	1 cut(s)	644
BssECI	CCNNGG	3 cut(s)	445, 772, 828
BssNAI	GTATAC	1 cut(s)	300
BssSI	CACGAG	1 cut(s)	293
BssT1I	CCWWGG	3 cut(s)	445, 772, 828
Bst1107I	GTATAC	1 cut(s)	300
Bst2BI	CACGAG	1 cut(s)	293
Bst4CI	ACNGT	1 cut(s)	799
BstAPI	GCANNNNNTGC	2 cut(s)	480, 489
BstBAI	YACGTR	1 cut(s)	788
BstBI	TTCGAA	1 cut(s)	215
BstC8I	GCNNGC	4 cut(s)	83, 121, 472, 494
BstDEI	CTNAG	3 cut(s)	347, 406, 669
BstDSI	CCRYGG	1 cut(s)	772
BstF5I	GGATG	2 cut(s)	116, 542
BstHHI	GCGC	1 cut(s)	223
BstMAI	GTCTC	3 cut(s)	13, 22, 433
BstMWI	GCNNNNNNNGC	6 cut(s)	120, 402, 411, 480, 489, 910
BstNSI	RCATGY	1 cut(s)	474
BstSFI	CTRYAG	1 cut(s)	12
BstSLI	GKGCMC	1 cut(s)	498
BstV1I	GCAGC	2 cut(s)	721, 856
BstZ17I	GTATAC	1 cut(s)	300
BtgI	CCRYGG	1 cut(s)	772
BtsCI	GGATG	2 cut(s)	116, 542
BtsIMutI	CAGTG	1 cut(s)	651
BveI	ACCTGC	1 cut(s)	724
Cac8I	GCNNGC	4 cut(s)	83, 121, 472, 494
CfoI	GCGC	1 cut(s)	223
Cfr13I	GGNCC	2 cut(s)	61, 431
CseI	GACGC	2 cut(s)	780, 851
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	9 cut(s)	150, 172, 423, 471, 500, 600, 730, 773, 862
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	3 cut(s)	347, 406, 669
DrdI	GACNNNNNNGTC	2 cut(s)	288, 447
DseDI	GACNNNNNNGTC	2 cut(s)	288, 447
Eco130I	CCWWGG	3 cut(s)	445, 772, 828
Eco31I	GGTCTC	1 cut(s)	433
Eco47I	GGWCC	2 cut(s)	61, 431
Eco72I	CACGTG	1 cut(s)	788
Eco88I	CYCGRG	1 cut(s)	834
EcoRI	GAATTC	1 cut(s)	653
EcoT14I	CCWWGG	3 cut(s)	445, 772, 828
EcoT22I	ATGCAT	2 cut(s)	472, 476
ErhI	CCWWGG	3 cut(s)	445, 772, 828
FaeI	CATG	9 cut(s)	153, 175, 426, 474, 503, 603, 733, 776, 865
FatI	CATG	9 cut(s)	149, 171, 422, 470, 499, 599, 729, 772, 861
FblI	GTMKAC	2 cut(s)	299, 794
Fnu4HI	GCNGC	2 cut(s)	735, 870
FokI	GGATG	2 cut(s)	123, 549
Fsp4HI	GCNGC	2 cut(s)	735, 870
FspBI	CTAG	1 cut(s)	543
FspI	TGCGCA	1 cut(s)	222
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	2 cut(s)	735, 870
GsaI	CCCAGC	1 cut(s)	709
GsuI	CTGGAG	1 cut(s)	112
HgaI	GACGC	2 cut(s)	780, 851
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	9 cut(s)	153, 175, 426, 474, 503, 603, 733, 776, 865
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HincII	GTYRAC	1 cut(s)	795
HindII	GTYRAC	1 cut(s)	795
HindIII	AAGCTT	3 cut(s)	45, 318, 403
HinfI	GANTC	6 cut(s)	126, 212, 343, 596, 661, 891
HphI	GGTGA	3 cut(s)	61, 386, 575
Hpy166II	GTNNAC	4 cut(s)	300, 496, 610, 795
Hpy188I	TCNGA	4 cut(s)	131, 333, 536, 698
Hpy188III	TCNNGA	5 cut(s)	91, 293, 658, 876, 888
Hpy8I	GTNNAC	4 cut(s)	300, 496, 610, 795
Hpy99I	CGWCG	1 cut(s)	796
HpyAV	CCTTC	2 cut(s)	523, 674
HpyCH4III	ACNGT	1 cut(s)	799
HpyCH4IV	ACGT	1 cut(s)	787
HpyF10VI	GCNNNNNNNGC	6 cut(s)	120, 402, 411, 480, 489, 910
HpyF3I	CTNAG	3 cut(s)	347, 406, 669
HpySE526I	ACGT	1 cut(s)	787
Hsp92II	CATG	9 cut(s)	153, 175, 426, 474, 503, 603, 733, 776, 865
HspAI	GCGC	1 cut(s)	221
Lsp1109I	GCAGC	2 cut(s)	721, 856
LweI	GCATC	3 cut(s)	101, 352, 881
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	1 cut(s)	787
MaeIII	GTNAC	2 cut(s)	290, 563
MboII	GAAGA	7 cut(s)	268, 411, 647, 789, 815, 818, 821
MhlI	GDGCHC	1 cut(s)	498
MluCI	AATT	9 cut(s)	21, 29, 181, 191, 228, 247, 388, 653, 781
Mph1103I	ATGCAT	2 cut(s)	472, 476
MroXI	GAANNNNTTC	1 cut(s)	781
MseI	TTAA	2 cut(s)	231, 549
MslI	CAYNNNNRTG	1 cut(s)	270
Mva1269I	GAATGC	3 cut(s)	223, 494, 615
MwoI	GCNNNNNNNGC	6 cut(s)	120, 402, 411, 480, 489, 910
NcoI	CCATGG	1 cut(s)	772
NlaIII	CATG	9 cut(s)	153, 175, 426, 474, 503, 603, 733, 776, 865
NmuCI	GTSAC	2 cut(s)	290, 563
NsbI	TGCGCA	1 cut(s)	222
NsiI	ATGCAT	2 cut(s)	472, 476
NspI	RCATGY	1 cut(s)	474
NspV	TTCGAA	1 cut(s)	215
PaeI	GCATGC	1 cut(s)	474
PaeR7I	CTCGAG	1 cut(s)	834
PctI	GAATGC	3 cut(s)	223, 494, 615
PdmI	GAANNNNTTC	1 cut(s)	781
PfeI	GAWTC	6 cut(s)	126, 212, 343, 596, 661, 891
PkrI	GCNGC	2 cut(s)	736, 871
PmaCI	CACGTG	1 cut(s)	788
PmlI	CACGTG	1 cut(s)	788
Ppu21I	YACGTR	1 cut(s)	788
PsiI	TTATAA	1 cut(s)	324
PspCI	CACGTG	1 cut(s)	788
PspFI	CCCAGC	1 cut(s)	705
PspPI	GGNCC	2 cut(s)	61, 431
PspXI	VCTCGAGB	1 cut(s)	834
PstI	CTGCAG	1 cut(s)	16
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	270
SalI	GTCGAC	1 cut(s)	793
SaqAI	TTAA	2 cut(s)	231, 549
SatI	GCNGC	2 cut(s)	735, 870
Sau96I	GGNCC	2 cut(s)	61, 431
SduI	GDGCHC	1 cut(s)	498
SfaNI	GCATC	3 cut(s)	101, 352, 881
SfcI	CTRYAG	1 cut(s)	12
Sfr274I	CTCGAG	1 cut(s)	834
SfuI	TTCGAA	1 cut(s)	215
SinI	GGWCC	2 cut(s)	61, 431
SlaI	CTCGAG	1 cut(s)	834
SmiMI	CAYNNNNRTG	1 cut(s)	270
SmlI	CTYRAG	4 cut(s)	305, 822, 834, 886
SmoI	CTYRAG	4 cut(s)	305, 822, 834, 886
SphI	GCATGC	1 cut(s)	474
Sse9I	AATT	9 cut(s)	21, 29, 181, 191, 228, 247, 388, 653, 781
SsiI	CCGC	1 cut(s)	72
SspMI	CTAG	1 cut(s)	543
StyI	CCWWGG	3 cut(s)	445, 772, 828
TaaI	ACNGT	1 cut(s)	799
TaiI	ACGT	1 cut(s)	790
TaqI	TCGA	3 cut(s)	215, 794, 835
TasI	AATT	9 cut(s)	21, 29, 181, 191, 228, 247, 388, 653, 781
TfiI	GAWTC	6 cut(s)	126, 212, 343, 596, 661, 891
Tru1I	TTAA	2 cut(s)	231, 549
Tru9I	TTAA	2 cut(s)	231, 549
TscAI	CASTG	1 cut(s)	651
TseFI	GTSAC	2 cut(s)	290, 563
TseI	GCWGC	2 cut(s)	734, 869
Tsp45I	GTSAC	2 cut(s)	290, 563
TspRI	CASTG	1 cut(s)	651
VneI	GTGCAC	1 cut(s)	494
VpaK11BI	GGWCC	2 cut(s)	61, 431
XapI	RAATTY	3 cut(s)	247, 653, 781
XceI	RCATGY	1 cut(s)	474
XhoI	CTCGAG	1 cut(s)	834
XmiI	GTMKAC	2 cut(s)	299, 794
XmnI	GAANNNNTTC	1 cut(s)	781
XspI	CTAG	1 cut(s)	543
Zsp2I	ATGCAT	2 cut(s)	472, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.