Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013705

Physical Location & Seq

Genomic Coordinates Reverse (-)

68686113 .. 68686662

Gene Structure 550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0561300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAGCACGAGTCTGAAGTATTTGTGGACTATAAATACAGGAAGAAGATTTTGGAGAATGAAGTTAACATGGAATGTGGCTGCGCCTGGTTTGATTATAAGGAAAGGAAAACAAGTTCATGAATCTGAAGCTAGTGATGATTCTCATCAACTGTCGACATCTTCCTCCACAGGAGCTGGACTCCTGGCAGAGGATGCCGTAGCATTGTTGCTAAAGCATAACAGAGGCTATTATGCATCAGAAGATGATAAATCCTCTGAGAGCCAAGGTACGTCACAAGGGAAACAACAGAGCAAGGGTAAGAAGCCCAAAAAAGAATACTTGGTCCGGAGAGACCTTCATTTCTTGATAGTGCATGATTCTACTGAAACATGGGTGCCTCCAGAAGGACAATCTGGTGATGGACGAACATCCTTGAAAGATCGATATGGCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ Fer4_13 Fer4_15

Protein Analysis

145

Amino Acids

16.27

Weight (kDa)

9.42

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013705)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g51170
malus_domestica	MD17G1030400.v1.1
prunus_persica	Prupe.3G207200_v2.0.a1 Prupe.3G289400_v2.0.a1 Prupe.3G289400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0172761
rosa_laevigata	RLG00000022131
rosa_multiflora	Rmu_sc0010744.1_g000004
rosa_roxburghii	Rroxscaffold_2G00079460 Rroxscaffold_2G00079550
rosa_rugosa	Rorug02G0561300 Rorug02G0561400 Rorug02G0562900
rosa_samantha	Rh2AG638600 Rh2BG652100 Rh2CG618400 Rh2DG666200
rosa_wichuraiana	Rw2G052750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	98
AccB1I	GGYRCC	1 cut(s)	376
AccI	GTMKAC	1 cut(s)	155
AccIII	TCCGGA	1 cut(s)	327
AcuI	CTGAAG	2 cut(s)	35, 147
AfaI	GTAC	1 cut(s)	271
AfiI	CCNNNNNNNGG	2 cut(s)	190, 386
AgsI	TTSAA	1 cut(s)	418
AjnI	CCWGG	2 cut(s)	85, 183
AjuI	GAANNNNNNNTTGG	2 cut(s)	34, 66
AloI	GAACNNNNNNTCC	2 cut(s)	99, 131
AluBI	AGCT	2 cut(s)	131, 176
AluI	AGCT	2 cut(s)	131, 176
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	327
AlwNI	CAGNNNCTG	1 cut(s)	176
Aor13HI	TCCGGA	1 cut(s)	327
ApeKI	GCWGC	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	325
BanI	GGYRCC	1 cut(s)	376
BauI	CACGAG	1 cut(s)	7
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	1 cut(s)	395
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	2 cut(s)	87, 185
BcoDI	GTCTC	1 cut(s)	327
BfaI	CTAG	1 cut(s)	132
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	2 cut(s)	87, 185
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	1 cut(s)	378
BmrFI	CCNGG	2 cut(s)	87, 185
BmsI	GCATC	2 cut(s)	184, 245
BplI	GAGNNNNNCTC	2 cut(s)	165, 197
BpmI	CTGGAG	1 cut(s)	366
Bsa29I	ATCGAT	1 cut(s)	424
BsaBI	GATNNNNATC	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	265
BsaWI	WCCGGW	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 386
Bse8I	GATNNNNATC	1 cut(s)	144
BseAI	TCCGGA	1 cut(s)	327
BseBI	CCWGG	2 cut(s)	87, 185
BseCI	ATCGAT	1 cut(s)	424
BseDI	CCNNGG	1 cut(s)	265
BseGI	GGATG	2 cut(s)	199, 410
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	2 cut(s)	190, 386
BseMII	CTCAG	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	67
BshNI	GGYRCC	1 cut(s)	376
BshVI	ATCGAT	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	328
BslI	CCNNNNNNNGG	2 cut(s)	190, 386
BsmAI	GTCTC	1 cut(s)	327
Bso31I	GGTCTC	1 cut(s)	327
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp13I	TCCGGA	1 cut(s)	327
Bsp143I	GATC	1 cut(s)	421
BspCNI	CTCAG	1 cut(s)	250
BspDI	ATCGAT	1 cut(s)	424
BspEI	TCCGGA	1 cut(s)	327
BspHI	TCATGA	1 cut(s)	118
BspLI	GGNNCC	1 cut(s)	378
BspT107I	GGYRCC	1 cut(s)	376
BspTNI	GGTCTC	1 cut(s)	327
BssECI	CCNNGG	1 cut(s)	265
BssMI	GATC	1 cut(s)	421
BssSI	CACGAG	1 cut(s)	7
BssT1I	CCWWGG	1 cut(s)	265
Bst2BI	CACGAG	1 cut(s)	7
Bst2UI	CCWGG	2 cut(s)	87, 185
Bst4CI	ACNGT	1 cut(s)	153
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstDEI	CTNAG	1 cut(s)	258
BstENI	CCTNNNNNAGG	2 cut(s)	188, 384
BstF5I	GGATG	2 cut(s)	199, 410
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	1 cut(s)	424
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	1 cut(s)	421
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	2 cut(s)	87, 185
BstSCI	CCNGG	2 cut(s)	85, 183
BstV1I	GCAGC	1 cut(s)	67
Bsu15I	ATCGAT	1 cut(s)	424
BsuTUI	ATCGAT	1 cut(s)	424
BtsCI	GGATG	2 cut(s)	199, 410
CaiI	CAGNNNCTG	1 cut(s)	176
CciI	TCATGA	1 cut(s)	118
CfoI	GCGC	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	325
ClaI	ATCGAT	1 cut(s)	424
Csp6I	GTAC	1 cut(s)	270
CviAII	CATG	4 cut(s)	69, 119, 356, 372
CviJI	RGCY	7 cut(s)	80, 131, 176, 228, 264, 307, 432
CviKI_1	RGCY	7 cut(s)	80, 131, 176, 228, 264, 307, 432
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	1 cut(s)	423
DpnII	GATC	1 cut(s)	421
Eco130I	CCWWGG	1 cut(s)	265
Eco31I	GGTCTC	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	325
Eco57I	CTGAAG	2 cut(s)	35, 147
EcoNI	CCTNNNNNAGG	2 cut(s)	188, 384
EcoRII	CCWGG	2 cut(s)	85, 183
EcoT14I	CCWWGG	1 cut(s)	265
EcoT22I	ATGCAT	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	265
FaeI	CATG	4 cut(s)	72, 122, 359, 375
FaiI	YATR	9 cut(s)	32, 70, 98, 120, 219, 234, 357, 373, 429
FatI	CATG	4 cut(s)	68, 118, 355, 371
FblI	GTMKAC	1 cut(s)	155
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	2 cut(s)	206, 397
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	1 cut(s)	81
GsuI	CTGGAG	1 cut(s)	366
HapII	CCGG	1 cut(s)	328
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	4 cut(s)	72, 122, 359, 375
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HincII	GTYRAC	2 cut(s)	66, 156
HindII	GTYRAC	2 cut(s)	66, 156
HinfI	GANTC	5 cut(s)	10, 122, 140, 180, 359
HpaI	GTTAAC	1 cut(s)	66
HpaII	CCGG	1 cut(s)	328
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	3 cut(s)	27, 66, 156
Hpy188I	TCNGA	4 cut(s)	15, 127, 241, 259
Hpy188III	TCNNGA	4 cut(s)	119, 328, 346, 383
Hpy8I	GTNNAC	3 cut(s)	27, 66, 156
HpyAV	CCTTC	2 cut(s)	347, 380
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	2 cut(s)	236, 355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	1 cut(s)	272
Hsp92II	CATG	4 cut(s)	72, 122, 359, 375
HspAI	GCGC	1 cut(s)	83
Kpn2I	TCCGGA	1 cut(s)	327
KspAI	GTTAAC	1 cut(s)	66
Kzo9I	GATC	1 cut(s)	421
LmnI	GCTCC	1 cut(s)	173
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	2 cut(s)	184, 245
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	273
MalI	GATC	1 cut(s)	423
MboI	GATC	1 cut(s)	421
MboII	GAAGA	4 cut(s)	54, 57, 153, 254
MhlI	GDGCHC	1 cut(s)	8
MlyI	GAGTC	2 cut(s)	19, 174
MnlI	CCTC	5 cut(s)	175, 184, 218, 265, 390
Mph1103I	ATGCAT	1 cut(s)	238
MroI	TCCGGA	1 cut(s)	327
MseI	TTAA	1 cut(s)	65
MspI	CCGG	1 cut(s)	328
MspR9I	CCNGG	2 cut(s)	87, 185
MvaI	CCWGG	2 cut(s)	87, 185
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	1 cut(s)	421
NlaIII	CATG	4 cut(s)	72, 122, 359, 375
NlaIV	GGNNCC	1 cut(s)	378
NmuCI	GTSAC	1 cut(s)	273
NsiI	ATGCAT	1 cut(s)	238
PagI	TCATGA	1 cut(s)	118
PfeI	GAWTC	3 cut(s)	122, 140, 359
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	2 cut(s)	18, 174
PpsI	GAGTC	2 cut(s)	18, 174
PsiI	TTATAA	1 cut(s)	98
Psp6I	CCWGG	2 cut(s)	85, 183
PspGI	CCWGG	2 cut(s)	85, 183
PspN4I	GGNNCC	1 cut(s)	378
PspPI	GGNCC	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	176
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
SalI	GTCGAC	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	1 cut(s)	421
Sau96I	GGNCC	1 cut(s)	325
SchI	GAGTC	2 cut(s)	19, 174
ScrFI	CCNGG	2 cut(s)	87, 185
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	5 cut(s)	133, 178, 271, 275, 339
SfaNI	GCATC	2 cut(s)	184, 245
SinI	GGWCC	1 cut(s)	325
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	2 cut(s)	85, 183
StyI	CCWWGG	1 cut(s)	265
TaaI	ACNGT	1 cut(s)	153
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	2 cut(s)	155, 424
TfiI	GAWTC	3 cut(s)	122, 140, 359
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TseFI	GTSAC	1 cut(s)	273
TseI	GCWGC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	273
TspDTI	ATGAA	4 cut(s)	74, 107, 135, 329
VpaK11BI	GGWCC	1 cut(s)	325
XagI	CCTNNNNNAGG	2 cut(s)	188, 384
XmiI	GTMKAC	1 cut(s)	155
XspI	CTAG	1 cut(s)	132
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.