Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013705

Physical Location & Seq

Genomic Coordinates Reverse (-)

21392990 .. 21394047

Gene Structure 1058 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G207200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

TATGAGATTCTGATGAGAGAGAATCTGAGGAAAGAATATAATGCTTCCATTGGTGAAATGAGAGGACATTACAGTTCATCAAGCTTAGGTCGCACTTCTTCATGGAATGGACCCTTGAGACCCCAAGATCTATTTGTTGATGAAAATGCATGCATAGAATGCTTGCACCATGCAAGTAGCATCTTCATATTCGATGAGGCTCTCGGATGTGCTAGGGTTAAACTTCAATATGGTGACGATGGACAAAAGATTGAGGTATCAGTTGATTCATGCACTGTGAACTGCATTCATCGGGTGGAGAAAGAAGAACTGTCAGTGCTTGAATTCCTGATTCAGCCTCAGCCAAAGGAAGGGTTCGGGATATTCGGAGGAGGCTGGGAAAGACCTGCAAATGTTTTCATGGCTGCTAAATCATTCAATAAACAAACTCACAATGAAAACCATGGAAGAAATTCAAGTGCGTCGACTGTTGAAGAAGAAGAAACACCTGCTCAAGCCAAGGCTGGAGCTGACGCAAGTAGGAAAATAAACATGGAAACTGCATCAGGATTATTCTCAAGATTCTGGCAATGGCAAAATAAGCCTTTTTGGGGCAAAAAGGTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ Fer4_13 Fer4_15

Protein Analysis

203

Amino Acids

22.78

Weight (kDa)

5.75

Isoelectric Point (pI)

54.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013705)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g51170
malus_domestica	MD17G1030400.v1.1
prunus_persica	Prupe.3G207200_v2.0.a1 Prupe.3G289400_v2.0.a1 Prupe.3G289400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0172761
rosa_laevigata	RLG00000022131
rosa_multiflora	Rmu_sc0010744.1_g000004
rosa_roxburghii	Rroxscaffold_2G00079460 Rroxscaffold_2G00079550
rosa_rugosa	Rorug02G0561300 Rorug02G0561400 Rorug02G0562900
rosa_samantha	Rh2AG638600 Rh2BG652100 Rh2CG618400 Rh2DG666200
rosa_wichuraiana	Rw2G052750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	496
Acc36I	ACCTGC	2 cut(s)	394, 496
AccI	GTMKAC	1 cut(s)	464
AcsI	RAATTY	2 cut(s)	323, 451
AfiI	CCNNNNNNNGG	2 cut(s)	350, 590
AgsI	TTSAA	5 cut(s)	227, 323, 418, 456, 473
AluBI	AGCT	2 cut(s)	84, 509
AluI	AGCT	2 cut(s)	84, 509
Alw26I	GTCTC	1 cut(s)	112
ApeKI	GCWGC	1 cut(s)	404
ApoI	RAATTY	2 cut(s)	323, 451
Asp700I	GAANNNNTTC	1 cut(s)	451
AspS9I	GGNCC	1 cut(s)	110
AsuHPI	GGTGA	2 cut(s)	65, 245
AvaII	GGWCC	1 cut(s)	110
BbvCI	CCTCAGC	1 cut(s)	339
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	213
BfuAI	ACCTGC	2 cut(s)	394, 496
BglII	AGATCT	1 cut(s)	127
BisI	GCNGC	1 cut(s)	405
BlsI	GCNGC	1 cut(s)	406
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	112
BmsI	GCATC	2 cut(s)	189, 551
BpmI	CTGGAG	1 cut(s)	525
Bpu10I	CCTNAGC	2 cut(s)	85, 339
BpuEI	CTTGAG	3 cut(s)	136, 477, 541
BsaI	GGTCTC	1 cut(s)	112
BsaJI	CCNNGG	2 cut(s)	442, 498
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 590
Bse3DI	GCAATG	1 cut(s)	575
BseDI	CCNNGG	2 cut(s)	442, 498
BseGI	GGATG	1 cut(s)	212
BseLI	CCNNNNNNNGG	2 cut(s)	350, 590
BseMI	GCAATG	1 cut(s)	575
BseMII	CTCAG	2 cut(s)	17, 353
BseRI	GAGGAG	1 cut(s)	384
BseXI	GCAGC	1 cut(s)	391
BseYI	CCCAGC	1 cut(s)	375
BslI	CCNNNNNNNGG	2 cut(s)	350, 590
BsmAI	GTCTC	1 cut(s)	112
BsmI	GAATGC	2 cut(s)	164, 285
Bso31I	GGTCTC	1 cut(s)	112
Bsp143I	GATC	1 cut(s)	127
Bsp19I	CCATGG	1 cut(s)	442
BspCNI	CTCAG	2 cut(s)	18, 352
BspLI	GGNNCC	1 cut(s)	112
BspMI	ACCTGC	2 cut(s)	394, 496
BspTNI	GGTCTC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	575
BssECI	CCNNGG	2 cut(s)	442, 498
BssMI	GATC	1 cut(s)	127
BssT1I	CCWWGG	2 cut(s)	442, 498
Bst4CI	ACNGT	4 cut(s)	74, 277, 312, 469
BstAPI	GCANNNNNTGC	1 cut(s)	159
BstC8I	GCNNGC	2 cut(s)	151, 164
BstDEI	CTNAG	3 cut(s)	26, 85, 339
BstDSI	CCRYGG	1 cut(s)	442
BstF5I	GGATG	1 cut(s)	212
BstKTI	GATC	1 cut(s)	130
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	3 cut(s)	90, 159, 580
BstNSI	RCATGY	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	391
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BtgI	CCRYGG	1 cut(s)	442
BtsCI	GGATG	1 cut(s)	212
BtsIMutI	CAGTG	2 cut(s)	273, 321
BveI	ACCTGC	2 cut(s)	394, 496
Cac8I	GCNNGC	2 cut(s)	151, 164
Cfr13I	GGNCC	1 cut(s)	110
CseI	GACGC	2 cut(s)	450, 521
CviAII	CATG	7 cut(s)	102, 150, 170, 270, 400, 443, 532
DdeI	CTNAG	3 cut(s)	26, 85, 339
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
Eco130I	CCWWGG	2 cut(s)	442, 498
Eco31I	GGTCTC	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	110
EcoRI	GAATTC	1 cut(s)	323
EcoT14I	CCWWGG	2 cut(s)	442, 498
EcoT22I	ATGCAT	2 cut(s)	151, 155
ErhI	CCWWGG	2 cut(s)	442, 498
FaeI	CATG	7 cut(s)	105, 153, 173, 273, 403, 446, 535
FatI	CATG	7 cut(s)	101, 149, 169, 269, 399, 442, 531
FblI	GTMKAC	1 cut(s)	464
Fnu4HI	GCNGC	1 cut(s)	405
FokI	GGATG	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	405
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	1 cut(s)	405
GsaI	CCCAGC	1 cut(s)	379
GsuI	CTGGAG	1 cut(s)	525
HgaI	GACGC	2 cut(s)	450, 521
Hin1II	CATG	7 cut(s)	105, 153, 173, 273, 403, 446, 535
HincII	GTYRAC	1 cut(s)	465
HindII	GTYRAC	1 cut(s)	465
HindIII	AAGCTT	1 cut(s)	82
HinfI	GANTC	5 cut(s)	7, 22, 266, 331, 561
HphI	GGTGA	2 cut(s)	65, 245
Hpy166II	GTNNAC	2 cut(s)	280, 465
Hpy188I	TCNGA	4 cut(s)	12, 27, 206, 368
Hpy188III	TCNNGA	4 cut(s)	328, 358, 546, 558
Hpy8I	GTNNAC	2 cut(s)	280, 465
Hpy99I	CGWCG	1 cut(s)	466
HpyAV	CCTTC	1 cut(s)	344
HpyCH4III	ACNGT	4 cut(s)	74, 277, 312, 469
HpyCH4V	TGCA	8 cut(s)	149, 153, 166, 173, 273, 285, 389, 542
HpyF10VI	GCNNNNNNNGC	3 cut(s)	90, 159, 580
HpyF3I	CTNAG	3 cut(s)	26, 85, 339
Hsp92II	CATG	7 cut(s)	105, 153, 173, 273, 403, 446, 535
Kzo9I	GATC	1 cut(s)	127
LmnI	GCTCC	1 cut(s)	506
LpnPI	CCDG	7 cut(s)	341, 361, 399, 489, 501, 531, 550
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	2 cut(s)	189, 551
MaeI	CTAG	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	7 cut(s)	90, 175, 317, 459, 485, 488, 491
MflI	RGATCY	1 cut(s)	127
MluCI	AATT	2 cut(s)	323, 451
MnlI	CCTC	7 cut(s)	21, 56, 190, 247, 348, 362, 365
Mph1103I	ATGCAT	2 cut(s)	151, 155
MroXI	GAANNNNTTC	1 cut(s)	451
MseI	TTAA	1 cut(s)	219
Mva1269I	GAATGC	2 cut(s)	164, 285
MwoI	GCNNNNNNNGC	3 cut(s)	90, 159, 580
NcoI	CCATGG	1 cut(s)	442
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	7 cut(s)	105, 153, 173, 273, 403, 446, 535
NlaIV	GGNNCC	1 cut(s)	112
NmuCI	GTSAC	1 cut(s)	233
NsiI	ATGCAT	2 cut(s)	151, 155
NspI	RCATGY	1 cut(s)	153
PaeI	GCATGC	1 cut(s)	153
PaqCI	CACCTGC	1 cut(s)	496
PctI	GAATGC	2 cut(s)	164, 285
PdmI	GAANNNNTTC	1 cut(s)	451
PfeI	GAWTC	5 cut(s)	7, 22, 266, 331, 561
PkrI	GCNGC	1 cut(s)	406
PspFI	CCCAGC	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	112
PspPI	GGNCC	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	127
SalI	GTCGAC	1 cut(s)	463
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	1 cut(s)	110
SetI	ASST	7 cut(s)	86, 91, 258, 388, 490, 511, 603
SfaNI	GCATC	2 cut(s)	189, 551
SinI	GGWCC	1 cut(s)	110
SmlI	CTYRAG	3 cut(s)	115, 492, 556
SmoI	CTYRAG	3 cut(s)	115, 492, 556
SphI	GCATGC	1 cut(s)	153
Sse9I	AATT	2 cut(s)	323, 451
SspMI	CTAG	1 cut(s)	213
StyI	CCWWGG	2 cut(s)	442, 498
TaaI	ACNGT	4 cut(s)	74, 277, 312, 469
TaqI	TCGA	2 cut(s)	192, 464
TasI	AATT	2 cut(s)	323, 451
TfiI	GAWTC	5 cut(s)	7, 22, 266, 331, 561
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	2 cut(s)	280, 321
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	1 cut(s)	404
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	8 cut(s)	66, 90, 156, 175, 258, 278, 388, 450
TspRI	CASTG	2 cut(s)	280, 321
VpaK11BI	GGWCC	1 cut(s)	110
XapI	RAATTY	2 cut(s)	323, 451
XceI	RCATGY	1 cut(s)	153
XmiI	GTMKAC	1 cut(s)	464
XmnI	GAANNNNTTC	1 cut(s)	451
XspI	CTAG	1 cut(s)	213
Zsp2I	ATGCAT	2 cut(s)	151, 155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.