Rroxscaffold_2G00079460

4Fe-4S single cluster domain of Ferredoxin I

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013705
Physical Location & Seq
Forward (+)
2455768 .. 2457209
1442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00079460.1

Sequence Viewer

Length: 576 bp
ATGTCTGTTGTGGCAGCAGTCTCAATTTCCCAATTTTCAGTACCAAAAGGTTTAATTCCAAGTTCAACAGCAGCTCACCACAAGCAAGCCTATCTTGAGTGGAATATAAGATGTTGTAACACAGAGTCAGGGGAAAAAGCAAATACAATTGGGAAGAATTACTATGAATTACTTGGAGTTGCTGTTGATTCAAACCCCCAGAAAATCAAACAAGCTTATAGGAATTTGCAAAAGAAATATCACCCAGATATTGCAGGCCAAGAGGGTCATGAGTATACCCTAAAGCTGAATGAAGCCTATAAGGTTCTGTTTAGGGGGAATCTGAGGAAGGAATATGATGCTTCTATTGGTCAAAGGAGAGTAAGTGTCAAAGGAAACAGCTCAACCTTTGATGGCAACTCATGGAAGGGAGTTTTGAGACCCCAAGCTCTCTTTGTTGATGAAAATGCTTGCATAAAAGGTTGCAGACAATGTGTGCACCAAGCAAGTGCTACCTACATGTTTGATGAGGCTCTCGGATGTGCAAGGGTTCAACTACAATACGGTGACGATGATCAAAAGATTGAGATAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ Fer4_13 Fer4_15

Protein Analysis

191

Amino Acids

21.35

Weight (kDa)

8.67

Isoelectric Point (pI)

37.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 53 - 113 4.1e-15 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 275
AcsI RAATTY 1 cut(s) 223
AfaI GTAC 1 cut(s) 42
AflIII ACRYGT 1 cut(s) 498
AgsI TTSAA 3 cut(s) 66, 192, 533
AluBI AGCT 5 cut(s) 74, 215, 286, 381, 428
AluI AGCT 5 cut(s) 74, 215, 286, 381, 428
Alw21I GWGCWC 1 cut(s) 480
Alw26I GTCTC 2 cut(s) 25, 412
Alw44I GTGCAC 1 cut(s) 476
AoxI GGCC 1 cut(s) 256
ApaLI GTGCAC 1 cut(s) 476
ApeKI GCWGC 2 cut(s) 14, 71
ApoI RAATTY 1 cut(s) 223
AsuHPI GGTGA 3 cut(s) 68, 233, 557
BaeGI GKGCMC 1 cut(s) 480
Bbv12I GWGCWC 1 cut(s) 480
BbvI GCAGC 2 cut(s) 26, 83
BccI CCATC 1 cut(s) 386
BclI TGATCA 1 cut(s) 553
BcoDI GTCTC 2 cut(s) 25, 412
BisI GCNGC 2 cut(s) 15, 72
BlsI GCNGC 2 cut(s) 16, 73
BmsI GCATC 1 cut(s) 328
BpuEI CTTGAG 1 cut(s) 116
BsaI GGTCTC 1 cut(s) 412
BsaXI ACNNNNNCTCC 4 cut(s) 168, 198, 349, 379
BseGI GGATG 1 cut(s) 524
BseMII CTCAG 1 cut(s) 314
BseSI GKGCMC 1 cut(s) 480
BseXI GCAGC 2 cut(s) 26, 83
BshFI GGCC 1 cut(s) 258
BsiHKAI GWGCWC 1 cut(s) 480
BsmAI GTCTC 2 cut(s) 25, 412
BsnI GGCC 1 cut(s) 258
Bso31I GGTCTC 1 cut(s) 412
Bsp1286I GDGCHC 1 cut(s) 480
Bsp143I GATC 1 cut(s) 553
BspANI GGCC 1 cut(s) 258
BspCNI CTCAG 1 cut(s) 315
BspHI TCATGA 1 cut(s) 268
BspTNI GGTCTC 1 cut(s) 412
BssMI GATC 1 cut(s) 553
BssNAI GTATAC 1 cut(s) 276
Bst1107I GTATAC 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 545
BstC8I GCNNGC 3 cut(s) 87, 256, 451
BstDEI CTNAG 1 cut(s) 323
BstF5I GGATG 1 cut(s) 524
BstKTI GATC 1 cut(s) 556
BstMAI GTCTC 2 cut(s) 25, 412
BstMBI GATC 1 cut(s) 553
BstNSI RCATGY 1 cut(s) 502
BstSLI GKGCMC 1 cut(s) 480
BstV1I GCAGC 2 cut(s) 26, 83
BstZ17I GTATAC 1 cut(s) 276
BsuRI GGCC 1 cut(s) 258
BtsCI GGATG 1 cut(s) 524
Cac8I GCNNGC 3 cut(s) 87, 256, 451
CciI TCATGA 1 cut(s) 268
Csp6I GTAC 1 cut(s) 41
CviAII CATG 3 cut(s) 269, 402, 499
CviJI RGCY 9 cut(s) 74, 89, 215, 258, 286, 296, 381, 428, 512
CviKI_1 RGCY 9 cut(s) 74, 89, 215, 258, 286, 296, 381, 428, 512
CviQI GTAC 1 cut(s) 41
DdeI CTNAG 1 cut(s) 323
DpnI GATC 1 cut(s) 555
DpnII GATC 1 cut(s) 553
Eco31I GGTCTC 1 cut(s) 412
FaeI CATG 3 cut(s) 272, 405, 502
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FatI CATG 3 cut(s) 268, 401, 498
FbaI TGATCA 1 cut(s) 553
FblI GTMKAC 1 cut(s) 275
Fnu4HI GCNGC 2 cut(s) 15, 72
FokI GGATG 1 cut(s) 531
Fsp4HI GCNGC 2 cut(s) 15, 72
GluI GCNGC 2 cut(s) 15, 72
HaeIII GGCC 1 cut(s) 258
Hin1II CATG 3 cut(s) 272, 405, 502
HindIII AAGCTT 1 cut(s) 213
HinfI GANTC 3 cut(s) 125, 188, 319
HphI GGTGA 3 cut(s) 68, 233, 557
Hpy166II GTNNAC 2 cut(s) 276, 478
Hpy188I TCNGA 2 cut(s) 324, 518
Hpy188III TCNNGA 2 cut(s) 95, 269
Hpy8I GTNNAC 2 cut(s) 276, 478
HpyAV CCTTC 2 cut(s) 322, 400
HpyCH4III ACNGT 1 cut(s) 545
HpyCH4V TGCA 6 cut(s) 229, 254, 453, 465, 478, 524
HpyF3I CTNAG 1 cut(s) 323
Hsp92II CATG 3 cut(s) 272, 405, 502
Ksp22I TGATCA 1 cut(s) 553
Kzo9I GATC 1 cut(s) 553
LpnPI CCDG 4 cut(s) 114, 212, 240, 258
Lsp1109I GCAGC 2 cut(s) 26, 83
LweI GCATC 1 cut(s) 328
MaeIII GTNAC 2 cut(s) 116, 545
MalI GATC 1 cut(s) 555
MboI GATC 1 cut(s) 553
MboII GAAGA 1 cut(s) 166
MfeI CAATTG 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 480
MluCI AATT 7 cut(s) 24, 32, 54, 147, 157, 167, 223
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 3 cut(s) 256, 318, 502
MseI TTAA 1 cut(s) 53
MunI CAATTG 1 cut(s) 147
NdeII GATC 1 cut(s) 553
NlaIII CATG 3 cut(s) 272, 405, 502
NmuCI GTSAC 1 cut(s) 545
NspI RCATGY 1 cut(s) 502
PagI TCATGA 1 cut(s) 268
PciI ACATGT 1 cut(s) 498
PfeI GAWTC 2 cut(s) 188, 319
PkrI GCNGC 2 cut(s) 16, 73
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PscI ACATGT 1 cut(s) 498
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 2 cut(s) 15, 72
Sau3AI GATC 1 cut(s) 553
SchI GAGTC 1 cut(s) 134
SduI GDGCHC 1 cut(s) 480
SfaNI GCATC 1 cut(s) 328
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 7 cut(s) 24, 32, 54, 147, 157, 167, 223
TaaI ACNGT 1 cut(s) 545
TasI AATT 7 cut(s) 24, 32, 54, 147, 157, 167, 223
TfiI GAWTC 2 cut(s) 188, 319
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TseFI GTSAC 1 cut(s) 545
TseI GCWGC 2 cut(s) 14, 71
Tsp45I GTSAC 1 cut(s) 545
TspDTI ATGAA 3 cut(s) 180, 306, 456
VneI GTGCAC 1 cut(s) 476
XapI RAATTY 1 cut(s) 223
XceI RCATGY 1 cut(s) 502
XmiI GTMKAC 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.