MD17G1060400.v1.1

Ras GTPase-activating protein-binding protein 2-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
4907221 .. 4911535
4315 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1060400.v1.1.491

Sequence Viewer

Length: 1383 bp
ATGGCCTTGCAGAATGCAATTTCTCGACCCACTCCTAGTGCCCAACTTGTTGGAAATGCTTTCATTGAGCAGTATTACCATATTCTTCATAATAACCCAGGCCTGGTCCATCGGTTTTATCAGGATTCAAGTATACTAAGCCGGCCTGATTCCAATGGTGTGATGACATCAGTGACCACTATGCAAGGAATCAATGAGAAGATCCTTTCCTTAAATTACAACAAATATAAGGCTGAGATAAAGACTGCTGATGCTCAGAAGTCTTATGAAGATGGGGTGACTGTGTTAGTTACTGGATGTTTAACAGGCAAGGATAACTTGAAAAGGAAATTCGCCCAATCATTTTTTCTTGCCCCTCAAGACAATGGGTTCTTTGTATTGAATGATGTCTTTAGATTTGTGGAAGATGGAGATCTTTTAGAAAACCATTCAGTTAATGAAGTTAATGATGCTGCAACAATCCTCTCAAGCCAGGATCCAGAGCCAACTCATGTTCCTGATCCTCCTGCACCTGATCTGGAAACTACTCAAGTTGAAGAGAATCCAATTATTGTTGAGAAAACTTATGACACATCAGACCATGAGAGACAATACACTACAGAATCTGACATAGAACCCCCGTCTTATTCAAATGGGAACGATGTCACTGTGGCAGTTGAGCTGGCTTCTACGACAGCCCAAGAGGATAGTTCGAAGAAGTCGTATGCATCAATTGTTAAAGTTCCTAAAGGGAGTCCGGGACCAAGTAAGGTTTATGTGCCTACTAATACTGTAAGAGTGGCTTCTAAGAAAGCGGAAACTAATTTGCCTGGGCCAACTGCACCTGCTTCTGTGCCTGAAGAATCAGCCCCAACTAGCACTAGTGCCTTAGAGAGTAGTGATACTAATGAGGAAGTTGAGGGCTATTCTATTTACATAAGGAATTTGCCCTTAAACGTGACGACTGATCAGCTTCAGGAAGAATTCAAGAAATTTGGACCAATAAAGCAAGGAGGCGTCCAAGTCCGAAATAAGAAACTCCAGGGCCACTGTTTTGGATTTGTTGAGTTCGAGTCTTCAAGTTCCATGAATAGTGCCATTCAGGCTTCACCAATCACTATTGGTGGCCGTCAAGCTGTCATTGAGATAAAGAGAACTACCACTCGAGTTGGTAGCAGTGAAAGAGGTAGATTTCCTCCTGCTGGAAGGGGTGGGTTCCGAAATGACAGCTTTAGAGGCCGTGGGAACTATGGCGGTGGCCGGAGCTTTGGCAGAAACGAATATGTGAGAAGGGGCGAATTCTCAGGCCGAGGCAGGGGTGGACCAGCCGGACGCAGTGGATATGGTTATCAGGCACGAGGGAGGGGCGGACACTCAAGTGAAGCAAACCAGAATGCTGTTTAA

Protein Analysis

461

Amino Acids

50.01

Weight (kDa)

5.99

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTF2 PF02136 17 - 133 6.7e-33 Nuclear transport factor 2 (NTF2) domain
RRM_1 PF00076 304 - 370 1.7e-13 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013703)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 832
Acc36I ACCTGC 1 cut(s) 832
AccI GTMKAC 1 cut(s) 133
AciI CCGC 3 cut(s) 794, 1233, 1347
AclWI GGATC 4 cut(s) 196, 470, 483, 494
AcoI YGGCCR 2 cut(s) 1105, 1237
AcsI RAATTY 5 cut(s) 329, 922, 962, 971, 1277
AcuI CTGAAG 2 cut(s) 858, 938
AcyI GRCGYC 1 cut(s) 996
AfiI CCNNNNNNNGG 3 cut(s) 103, 1181, 1294
AgsI TTSAA 7 cut(s) 129, 322, 382, 536, 630, 967, 1059
AhlI ACTAGT 1 cut(s) 860
AjnI CCWGG 5 cut(s) 97, 102, 471, 808, 1020
AjuI GAANNNNNNNTTGG 2 cut(s) 330, 362
AleI CACNNNNGTG 1 cut(s) 1356
AluBI AGCT 5 cut(s) 661, 952, 1115, 1209, 1245
AluI AGCT 5 cut(s) 661, 952, 1115, 1209, 1245
Alw26I GTCTC 1 cut(s) 580
AlwI GGATC 4 cut(s) 196, 470, 483, 494
AlwNI CAGNNNCTG 1 cut(s) 605
Ama87I CYCGRG 1 cut(s) 1143
AoxI GGCC 9 cut(s) 3, 100, 143, 812, 1024, 1105, 1216, 1237, 1285
ApeKI GCWGC 1 cut(s) 452
ApoI RAATTY 5 cut(s) 329, 922, 962, 971, 1277
AspS9I GGNCC 6 cut(s) 106, 740, 812, 977, 1024, 1301
AsuC2I CCSGG 1 cut(s) 738
AsuHPI GGTGA 2 cut(s) 289, 1080
AsuII TTCGAA 1 cut(s) 692
AvaI CYCGRG 1 cut(s) 1143
AvaII GGWCC 4 cut(s) 106, 740, 977, 1301
BaeGI GKGCMC 1 cut(s) 43
BamHI GGATCC 1 cut(s) 475
BauI CACGAG 1 cut(s) 1335
BbsI GAAGAC 1 cut(s) 1047
BbvI GCAGC 1 cut(s) 439
BccI CCATC 3 cut(s) 117, 266, 401
BceAI ACGGC 2 cut(s) 1092, 1203
BciT130I CCWGG 5 cut(s) 99, 104, 473, 810, 1022
BclI TGATCA 1 cut(s) 946
BcnI CCSGG 1 cut(s) 738
BcoDI GTCTC 1 cut(s) 580
BcuI ACTAGT 1 cut(s) 860
BfaI CTAG 3 cut(s) 36, 855, 861
BfmI CTRYAG 1 cut(s) 597
BfuAI ACCTGC 1 cut(s) 832
BglI GCCNNNNNGGC 1 cut(s) 1082
BglII AGATCT 1 cut(s) 412
BisI GCNGC 1 cut(s) 453
BlsI GCNGC 1 cut(s) 454
Bme1390I CCNGG 6 cut(s) 99, 104, 473, 738, 810, 1022
Bme18I GGWCC 4 cut(s) 106, 740, 977, 1301
BmeT110I CYCGRG 1 cut(s) 1143
BmgT120I GGNCC 6 cut(s) 106, 740, 812, 977, 1024, 1301
BmiI GGNNCC 3 cut(s) 477, 741, 1196
BmrFI CCNGG 6 cut(s) 99, 104, 473, 738, 810, 1022
BmsI GCATC 3 cut(s) 241, 439, 716
BpiI GAAGAC 1 cut(s) 1047
BpmI CTGGAG 1 cut(s) 1004
Bpu14I TTCGAA 1 cut(s) 692
BpuEI CTTGAG 4 cut(s) 342, 451, 513, 1339
BpuMI CCSGG 1 cut(s) 738
BsaBI GATNNNNATC 1 cut(s) 411
BsaHI GRCGYC 1 cut(s) 996
BsaJI CCNNGG 5 cut(s) 97, 809, 1021, 1219, 1288
Bsc4I CCNNNNNNNGG 3 cut(s) 103, 1181, 1294
Bse118I RCCGGY 1 cut(s) 141
Bse1I ACTGG 1 cut(s) 298
Bse8I GATNNNNATC 1 cut(s) 411
BseBI CCWGG 5 cut(s) 99, 104, 473, 810, 1022
BseDI CCNNGG 5 cut(s) 97, 809, 1021, 1219, 1288
BseGI GGATG 1 cut(s) 302
BseJI GATNNNNATC 1 cut(s) 411
BseLI CCNNNNNNNGG 3 cut(s) 103, 1181, 1294
BseMII CTCAG 3 cut(s) 225, 269, 1296
BseNI ACTGG 1 cut(s) 298
BseSI GKGCMC 1 cut(s) 43
BseXI GCAGC 1 cut(s) 439
BsgI GTGCAG 2 cut(s) 492, 804
BshFI GGCC 9 cut(s) 5, 102, 145, 814, 1026, 1107, 1218, 1239, 1287
BsiHKCI CYCGRG 1 cut(s) 1143
BsiSI CCGG 4 cut(s) 142, 737, 1240, 1308
BslFI GGGAC 1 cut(s) 753
BslI CCNNNNNNNGG 3 cut(s) 103, 1181, 1294
BsmAI GTCTC 1 cut(s) 580
BsmFI GGGAC 1 cut(s) 753
BsmI GAATGC 2 cut(s) 19, 1378
BsnI GGCC 9 cut(s) 5, 102, 145, 814, 1026, 1107, 1218, 1239, 1287
BsoBI CYCGRG 1 cut(s) 1143
Bsp119I TTCGAA 1 cut(s) 692
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 6 cut(s) 201, 412, 475, 499, 514, 946
BspACI CCGC 3 cut(s) 794, 1233, 1347
BspANI GGCC 9 cut(s) 5, 102, 145, 814, 1026, 1107, 1218, 1239, 1287
BspCNI CTCAG 3 cut(s) 226, 268, 1295
BspLI GGNNCC 3 cut(s) 477, 741, 1196
BspMI ACCTGC 1 cut(s) 832
BspPI GGATC 4 cut(s) 196, 470, 483, 494
BspT104I TTCGAA 1 cut(s) 692
BsrFI RCCGGY 1 cut(s) 141
BsrI ACTGG 1 cut(s) 298
BssAI RCCGGY 1 cut(s) 141
BssECI CCNNGG 5 cut(s) 97, 809, 1021, 1219, 1288
BssMI GATC 6 cut(s) 201, 412, 475, 499, 514, 946
BssNAI GTATAC 1 cut(s) 134
BssNI GRCGYC 1 cut(s) 996
BssSI CACGAG 1 cut(s) 1335
Bst1107I GTATAC 1 cut(s) 134
Bst2BI CACGAG 1 cut(s) 1335
Bst2UI CCWGG 5 cut(s) 99, 104, 473, 810, 1022
Bst4CI ACNGT 4 cut(s) 283, 649, 772, 1031
Bst6I CTCTTC 1 cut(s) 531
BstACI GRCGYC 1 cut(s) 996
BstBI TTCGAA 1 cut(s) 692
BstC8I GCNNGC 2 cut(s) 143, 663
BstDEI CTNAG 6 cut(s) 137, 234, 255, 786, 868, 1282
BstDSI CCRYGG 1 cut(s) 1219
BstF5I GGATG 1 cut(s) 302
BstKTI GATC 6 cut(s) 204, 415, 478, 502, 517, 949
BstMAI GTCTC 1 cut(s) 580
BstMBI GATC 6 cut(s) 201, 412, 475, 499, 514, 946
BstMWI GCNNNNNNNGC 2 cut(s) 1082, 1215
BstNI CCWGG 5 cut(s) 99, 104, 473, 810, 1022
BstSCI CCNGG 6 cut(s) 97, 102, 471, 736, 808, 1020
BstSFI CTRYAG 1 cut(s) 597
BstSLI GKGCMC 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 439
BstV2I GAAGAC 1 cut(s) 1047
BstX2I RGATCY 3 cut(s) 201, 412, 475
BstXI CCANNNNNNTGG 2 cut(s) 50, 1034
BstYI RGATCY 3 cut(s) 201, 412, 475
BstZ17I GTATAC 1 cut(s) 134
BsuRI GGCC 9 cut(s) 5, 102, 145, 814, 1026, 1107, 1218, 1239, 1287
BtgI CCRYGG 1 cut(s) 1219
BtsCI GGATG 1 cut(s) 302
BtsI GCAGTG 2 cut(s) 1162, 1321
BtsIMutI CAGTG 5 cut(s) 177, 645, 1027, 1162, 1321
BveI ACCTGC 1 cut(s) 832
Cac8I GCNNGC 2 cut(s) 143, 663
CaiI CAGNNNCTG 1 cut(s) 605
Cfr10I RCCGGY 1 cut(s) 141
Cfr13I GGNCC 6 cut(s) 106, 740, 812, 977, 1024, 1301
CseI GACGC 2 cut(s) 985, 1320
CspCI CAANNNNNGTGG 2 cut(s) 1129, 1164
CviAII CATG 3 cut(s) 491, 581, 1066
DdeI CTNAG 6 cut(s) 137, 234, 255, 786, 868, 1282
DpnI GATC 6 cut(s) 203, 414, 477, 501, 516, 948
DpnII GATC 6 cut(s) 201, 412, 475, 499, 514, 946
EaeI YGGCCR 2 cut(s) 1105, 1237
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
EciI GGCGGA 1 cut(s) 1362
Eco147I AGGCCT 1 cut(s) 102
Eco47I GGWCC 4 cut(s) 106, 740, 977, 1301
Eco57I CTGAAG 2 cut(s) 858, 938
Eco88I CYCGRG 1 cut(s) 1143
EcoRI GAATTC 2 cut(s) 962, 1277
EcoRII CCWGG 5 cut(s) 97, 102, 471, 808, 1020
EcoT22I ATGCAT 1 cut(s) 709
FaeI CATG 3 cut(s) 494, 584, 1069
FalI AAGNNNNNCTT 4 cut(s) 302, 334, 766, 798
FaqI GGGAC 1 cut(s) 753
FatI CATG 3 cut(s) 490, 580, 1065
FbaI TGATCA 1 cut(s) 946
FblI GTMKAC 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 453
FokI GGATG 1 cut(s) 309
Fsp4HI GCNGC 1 cut(s) 453
FspBI CTAG 3 cut(s) 36, 855, 861
GluI GCNGC 1 cut(s) 453
GsuI CTGGAG 1 cut(s) 1004
HaeIII GGCC 9 cut(s) 5, 102, 145, 814, 1026, 1107, 1218, 1239, 1287
HapII CCGG 4 cut(s) 142, 737, 1240, 1308
HgaI GACGC 2 cut(s) 985, 1320
Hin1I GRCGYC 1 cut(s) 996
Hin1II CATG 3 cut(s) 494, 584, 1069
HinfI GANTC 8 cut(s) 125, 149, 189, 541, 602, 733, 842, 1052
HpaII CCGG 4 cut(s) 142, 737, 1240, 1308
HphI GGTGA 2 cut(s) 289, 1080
Hpy166II GTNNAC 2 cut(s) 134, 1301
Hpy188I TCNGA 5 cut(s) 258, 577, 607, 1007, 1199
Hpy188III TCNNGA 8 cut(s) 24, 122, 359, 479, 497, 518, 956, 967
Hpy8I GTNNAC 2 cut(s) 134, 1301
HpyAV CCTTC 2 cut(s) 1179, 1263
HpyCH4III ACNGT 4 cut(s) 283, 649, 772, 1031
HpyCH4IV ACGT 1 cut(s) 936
HpyCH4V TGCA 7 cut(s) 10, 17, 184, 455, 509, 707, 821
HpyF10VI GCNNNNNNNGC 2 cut(s) 1082, 1215
HpyF3I CTNAG 6 cut(s) 137, 234, 255, 786, 868, 1282
HpySE526I ACGT 1 cut(s) 936
Hsp92I GRCGYC 1 cut(s) 996
Hsp92II CATG 3 cut(s) 494, 584, 1069
KroI GCCGGC 1 cut(s) 141
KroNI GCCGGC 1 cut(s) 143
Ksp22I TGATCA 1 cut(s) 946
Kzo9I GATC 6 cut(s) 201, 412, 475, 499, 514, 946
LmnI GCTCC 1 cut(s) 1242
Lsp1109I GCAGC 1 cut(s) 439
LweI GCATC 3 cut(s) 241, 439, 716
MaeI CTAG 3 cut(s) 36, 855, 861
MaeII ACGT 1 cut(s) 936
MaeIII GTNAC 5 cut(s) 172, 277, 289, 643, 937
MalI GATC 6 cut(s) 203, 414, 477, 501, 516, 948
MboI GATC 6 cut(s) 201, 412, 475, 499, 514, 946
MboII GAAGA 9 cut(s) 77, 211, 281, 416, 548, 706, 851, 971, 1047
MfeI CAATTG 1 cut(s) 711
MflI RGATCY 3 cut(s) 201, 412, 475
MhlI GDGCHC 1 cut(s) 43
MlyI GAGTC 2 cut(s) 742, 1061
MmeI TCCRAC 1 cut(s) 31
Mph1103I ATGCAT 1 cut(s) 709
MroNI GCCGGC 1 cut(s) 141
MseI TTAA 7 cut(s) 212, 302, 435, 444, 717, 932, 1381
MslI CAYNNNNRTG 1 cut(s) 1356
MspI CCGG 4 cut(s) 142, 737, 1240, 1308
MspR9I CCNGG 6 cut(s) 99, 104, 473, 738, 810, 1022
MunI CAATTG 1 cut(s) 711
Mva1269I GAATGC 2 cut(s) 19, 1378
MvaI CCWGG 5 cut(s) 99, 104, 473, 810, 1022
MwoI GCNNNNNNNGC 2 cut(s) 1082, 1215
NaeI GCCGGC 1 cut(s) 143
NciI CCSGG 1 cut(s) 738
NdeII GATC 6 cut(s) 201, 412, 475, 499, 514, 946
NgoMIV GCCGGC 1 cut(s) 141
NlaIII CATG 3 cut(s) 494, 584, 1069
NlaIV GGNNCC 3 cut(s) 477, 741, 1196
NmeAIII GCCGAG 1 cut(s) 1313
NmuCI GTSAC 4 cut(s) 172, 277, 643, 937
NsiI ATGCAT 1 cut(s) 709
NspV TTCGAA 1 cut(s) 692
OliI CACNNNNGTG 1 cut(s) 1356
PaeR7I CTCGAG 1 cut(s) 1143
PaqCI CACCTGC 1 cut(s) 832
PceI AGGCCT 1 cut(s) 102
PcsI WCGNNNNNNNCGW 1 cut(s) 698
PctI GAATGC 2 cut(s) 19, 1378
PdiI GCCGGC 1 cut(s) 143
PfeI GAWTC 6 cut(s) 125, 149, 189, 541, 602, 842
PfoI TCCNGGA 1 cut(s) 736
PkrI GCNGC 1 cut(s) 454
PleI GAGTC 2 cut(s) 741, 1060
PpsI GAGTC 2 cut(s) 741, 1060
Psp6I CCWGG 5 cut(s) 97, 102, 471, 808, 1020
PspGI CCWGG 5 cut(s) 97, 102, 471, 808, 1020
PspN4I GGNNCC 3 cut(s) 477, 741, 1196
PspPI GGNCC 6 cut(s) 106, 740, 812, 977, 1024, 1301
PspXI VCTCGAGB 1 cut(s) 1143
PstNI CAGNNNCTG 1 cut(s) 605
PsuI RGATCY 3 cut(s) 201, 412, 475
RseI CAYNNNNRTG 1 cut(s) 1356
SaqAI TTAA 7 cut(s) 212, 302, 435, 444, 717, 932, 1381
SatI GCNGC 1 cut(s) 453
Sau3AI GATC 6 cut(s) 201, 412, 475, 499, 514, 946
Sau96I GGNCC 6 cut(s) 106, 740, 812, 977, 1024, 1301
SchI GAGTC 2 cut(s) 742, 1061
ScrFI CCNGG 6 cut(s) 99, 104, 473, 738, 810, 1022
SduI GDGCHC 1 cut(s) 43
SfaNI GCATC 3 cut(s) 241, 439, 716
SfcI CTRYAG 1 cut(s) 597
Sfr274I CTCGAG 1 cut(s) 1143
SfuI TTCGAA 1 cut(s) 692
SinI GGWCC 4 cut(s) 106, 740, 977, 1301
SlaI CTCGAG 1 cut(s) 1143
SmiMI CAYNNNNRTG 1 cut(s) 1356
SmlI CTYRAG 5 cut(s) 357, 466, 528, 1143, 1354
SmoI CTYRAG 5 cut(s) 357, 466, 528, 1143, 1354
SpeI ACTAGT 1 cut(s) 860
SseBI AGGCCT 1 cut(s) 102
SsiI CCGC 3 cut(s) 794, 1233, 1347
SspMI CTAG 3 cut(s) 36, 855, 861
StuI AGGCCT 1 cut(s) 102
StyD4I CCNGG 6 cut(s) 97, 102, 471, 736, 808, 1020
TaaI ACNGT 4 cut(s) 283, 649, 772, 1031
TaiI ACGT 1 cut(s) 939
TaqI TCGA 4 cut(s) 25, 692, 1050, 1144
TfiI GAWTC 6 cut(s) 125, 149, 189, 541, 602, 842
Tru1I TTAA 7 cut(s) 212, 302, 435, 444, 717, 932, 1381
Tru9I TTAA 7 cut(s) 212, 302, 435, 444, 717, 932, 1381
TscAI CASTG 5 cut(s) 177, 652, 1034, 1162, 1321
TseFI GTSAC 4 cut(s) 172, 277, 643, 937
TseI GCWGC 1 cut(s) 452
Tsp45I GTSAC 4 cut(s) 172, 277, 643, 937
TspDTI ATGAA 5 cut(s) 52, 77, 282, 453, 1082
TspRI CASTG 5 cut(s) 177, 652, 1034, 1162, 1321
VpaK11BI GGWCC 4 cut(s) 106, 740, 977, 1301
XapI RAATTY 5 cut(s) 329, 922, 962, 971, 1277
XhoI CTCGAG 1 cut(s) 1143
XmiI GTMKAC 1 cut(s) 133
XspI CTAG 3 cut(s) 36, 855, 861
Zsp2I ATGCAT 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.