Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0013703

Physical Location & Seq

Genomic Coordinates Forward (+)

83978661 .. 83984032

Gene Structure 5372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG605000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1911 bp

ATGCGTTCCATCTCCTTAAGCTCGTCCTTGACGGACTCGACGTCGCCGAAGAACTTGTCGAGGTTGACTCCGGTGCCGGTGCGGGACGCCGTCGCCGACGACATCTCGATGACGTGCTCGTCGTTGTTGGCGGGTTCGCTGCGGAACCTGGAGAAGGAGCCCGAAAACAGTGTGAAATTAGCTCCCTCTTTTTTCGTGCGCGAACTGTTCATCTTTCCCTCTCTCTCTCTCGCTCACGCACTCTTTCTTCGCCGCCGTACCTACCGCCGTGTCATCTATCTCGTCGTCTCCTACCTCCGTCTCCACCGCCGTCATAGCATTCCGTTAATAAGAATGGCTTTGCAGACAGCGATTCCTCCAGTGATCCCCAGTGCTCAAGTTGTTGCAAATGCTTTCATCGCGCAGTATTACCATATTCTTCATCACAACCCTGGCCATGTCTATAGATTTTATCAGGATTCAAGTGTGATGAGCCGGCCTGATTCCGAGGGTGTGATGAGATCGGTGACCACTATGCAAGGAATCAATGAGAAGATCCTTTCCTTTGATTACAAGGAATATAAGGCTGAGATAGAAACTGCAGATGCTCAGAACTCTTATAAAGATGGGGTGACTGTGTTAGTTACTGGATGCTTAACAAGCAAGGATAACTTGAAAAGGAAATTCGCTCAATCATTTTTTCTTGCCCCACAAGAGAATGGGTTTTTTGTGTTGAATGATGTCTTTAGGTATGTAGAAGATGGAGAACTGTTGAAAAACCATTCAGTTAATAATGATGCCACAACAATCCACTTGAACCAAGAACCAGAACCAACTCATGTTCTGGATCCTCCCGCACCGGATCTGGAAACTACTCAAGTTGAAGAGGATCAAATTGTTATTGAGAAAACTTTTGACACATCAGACCAGGATAGACAATCAGCTAATGAGAAAGAATCTGATACCGAACGCCCATCTTATTCAAATGGGAATGATGTCCATGTTGCAGTTGAATCAACTTCTACTACAGCCCAAGAAGATGGCCCAAAGAAGTCTTATGCATCAATTGTAAAAGTAGCCAAAGGAAGTCCAGGACCAAATAAAGTTTATGTGCCCACTAGCACCGTAAAAGTTGCTCCTAAGAAAACAGAGAATTCTTTGCCTGCGCCAGCTGCATCTGCTTCTGTGCCTGAAGCATCAGCTCCAACTAGCACCAGTACCCTCGAGGGCAGTGAGACTAATGAGGAAGTTGAGGGCTATTCTATTTACATACGTAATTTGCCCTTGAGTGTGACGGCTGATCAGCTTGAGGTTGAATTCAAGAAATTTGGACCAATAAAGGAAGGAGGCATCCAAGTCCGAAATAAGAAGCTTCAGGGATACTGTTTTGGATTTGTTGAATTTCTGTCTCTAAGTTCCATGAATAGCGCCATTCAGGCTTCACCAATCACTGTTGGGGGCCGTCAAGCTATCATCGAGATAAAGAGAACTAACACACGTATTGGTAGCAGTGGAAGTGGTTCATTCACTTCTGGAAGGGGAGGGTTTCGGGGTGACAGCTTTAGGGGCCATGGTAGTTATGGTGGTGGCCGGAGCTTTGTTAGAAGTGAGTATGTGAACAGGGCTGAATTCTCAGGTCGAGGCAGGGGTCGAGCTGGGCGTGGCAGAGAAGGTTATCGACCAGGGAGAGGAGACGGTCATCAACAAGGGAGAGGAGAGGGTTATCAACAAGGGAGAGGAGACAGTTATCACCAAGGTAGAGGAGATGGTTATCAACAAGGGAGAGGAGACGGTTATCAACATGGGAGAGGAGAAGTTTATCAACAAAGGAGAGGAGACGGTTATCATCAAGGGAGAGGAGACGGTTATCAGCAAGGGAGAGGAAGAGGTGGCCGTCCAAGTGGACCAAAGCATAATGCGGTTTCAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

636

Amino Acids

69.83

Weight (kDa)

9.04

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTF2	PF02136	128 - 244	1.2e-31	Nuclear transport factor 2 (NTF2) domain
RRM_1	PF00076	415 - 480	3.2e-10	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46800 FvH4_6g46800
malus_domestica	MD09G1067300.v1.1 MD17G1060400.v1.1
prunus_persica	Prupe.3G254500_v2.0.a1
pyrus_communis	pycom17g06010
rosa_chinensis	RchiOBHm_Chr2g0165791
rosa_laevigata	RLG00000021554
rosa_multiflora	Rmu_sc0003227.1_g000012
rosa_roxburghii	Rroxscaffold_2G00085520
rosa_rugosa	Rorug02G0517400 Rorug02G0517500 Rorug02G0517600
rosa_samantha	Rh2AG583100 Rh2BG595200 Rh2CG565800 Rh2DG605000
rosa_wichuraiana	Rw2G048640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	600
AasI	GACNNNNNNGTC	1 cut(s)	118
AatII	GACGTC	1 cut(s)	44
AbsI	CCTCGAGG	1 cut(s)	1202
AccB1I	GGYRCC	1 cut(s)	73
AccII	CGCG	2 cut(s)	201, 401
AciI	CCGC	8 cut(s)	82, 131, 142, 253, 265, 307, 834, 1898
AclWI	GGATC	6 cut(s)	358, 529, 821, 834, 849, 876
AcoI	YGGCCR	3 cut(s)	433, 1567, 1870
AcsI	RAATTY	6 cut(s)	662, 1132, 1295, 1304, 1379, 1607
AcuI	CTGAAG	2 cut(s)	1191, 1337
AcyI	GRCGYC	2 cut(s)	41, 87
AfaI	GTAC	2 cut(s)	259, 1198
AfiI	CCNNNNNNNGG	2 cut(s)	154, 1667
AflII	CTTAAG	1 cut(s)	16
AflIII	ACRYGT	1 cut(s)	1475
AhdI	GACNNNNNGTC	1 cut(s)	40
AjiI	CACGTC	1 cut(s)	114
AjnI	CCWGG	5 cut(s)	147, 430, 906, 1069, 1660
Alw21I	GWGCWC	2 cut(s)	119, 376
Alw26I	GTCTC	9 cut(s)	292, 305, 1208, 1392, 1665, 1713, 1761, 1809, 1833
AlwI	GGATC	6 cut(s)	358, 529, 821, 834, 849, 876
Ama87I	CYCGRG	1 cut(s)	1202
AoxI	GGCC	7 cut(s)	433, 476, 1021, 1438, 1546, 1567, 1870
ApeKI	GCWGC	2 cut(s)	139, 1151
ApoI	RAATTY	6 cut(s)	662, 1132, 1295, 1304, 1379, 1607
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
Asp700I	GAANNNNTTC	1 cut(s)	1498
AspLEI	GCGC	4 cut(s)	201, 403, 1147, 1409
AspS9I	GGNCC	6 cut(s)	1022, 1073, 1310, 1438, 1546, 1883
AsuHPI	GGTGA	5 cut(s)	517, 622, 1413, 1544, 1721
AvaI	CYCGRG	1 cut(s)	1202
AvaII	GGWCC	3 cut(s)	1073, 1310, 1883
BaeGI	GKGCMC	1 cut(s)	1095
BalI	TGGCCA	1 cut(s)	435
BamHI	GGATCC	1 cut(s)	826
BanI	GGYRCC	1 cut(s)	73
BanII	GRGCYC	1 cut(s)	162
Bbv12I	GWGCWC	2 cut(s)	119, 376
BbvI	GCAGC	2 cut(s)	126, 1138
BccI	CCATC	6 cut(s)	17, 599, 734, 961, 1013, 1739
BceAI	ACGGC	7 cut(s)	74, 240, 252, 294, 1290, 1425, 1857
BciT130I	CCWGG	5 cut(s)	149, 432, 908, 1071, 1662
BciVI	GTATCC	1 cut(s)	1352
BclI	TGATCA	1 cut(s)	1279
BcoDI	GTCTC	9 cut(s)	292, 305, 1208, 1392, 1665, 1713, 1761, 1809, 1833
BfaI	CTAG	2 cut(s)	1098, 1188
BfmI	CTRYAG	3 cut(s)	442, 579, 1005
BfoI	RGCGCY	1 cut(s)	1410
BfrI	CTTAAG	1 cut(s)	16
BfuI	GTATCC	1 cut(s)	1352
BglI	GCCNNNNNGGC	1 cut(s)	1415
BisI	GCNGC	3 cut(s)	140, 253, 1152
BlsI	GCNGC	3 cut(s)	141, 254, 1153
Bme1390I	CCNGG	5 cut(s)	149, 432, 908, 1071, 1662
Bme18I	GGWCC	3 cut(s)	1073, 1310, 1883
BmeRI	GACNNNNNGTC	1 cut(s)	40
BmeT110I	CYCGRG	1 cut(s)	1202
BmgBI	CACGTC	1 cut(s)	114
BmgT120I	GGNCC	6 cut(s)	1022, 1073, 1310, 1438, 1546, 1883
BmiI	GGNNCC	6 cut(s)	75, 146, 159, 828, 1439, 1547
BmrFI	CCNGG	5 cut(s)	149, 432, 908, 1071, 1662
BmrI	ACTGGG	1 cut(s)	363
BmsI	GCATC	7 cut(s)	574, 620, 766, 1049, 1163, 1184, 1338
BmuI	ACTGGG	1 cut(s)	363
BplI	GAGNNNNNCTC	2 cut(s)	52, 84
BpmI	CTGGAG	2 cut(s)	170, 342
BpuEI	CTTGAG	4 cut(s)	360, 840, 1285, 1307
BsaAI	YACGTR	2 cut(s)	1253, 1478
BsaBI	GATNNNNATC	1 cut(s)	1749
BsaHI	GRCGYC	2 cut(s)	41, 87
BsaJI	CCNNGG	5 cut(s)	430, 486, 1549, 1661, 1732
BsaWI	WCCGGW	2 cut(s)	70, 838
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 1667
Bse118I	RCCGGY	2 cut(s)	76, 474
Bse1I	ACTGG	4 cut(s)	359, 369, 631, 1194
Bse8I	GATNNNNATC	1 cut(s)	1749
BseBI	CCWGG	5 cut(s)	149, 432, 908, 1071, 1662
BseDI	CCNNGG	5 cut(s)	430, 486, 1549, 1661, 1732
BseGI	GGATG	2 cut(s)	635, 1329
BseJI	GATNNNNATC	1 cut(s)	1749
BseLI	CCNNNNNNNGG	2 cut(s)	154, 1667
BseMII	CTCAG	3 cut(s)	558, 602, 1626
BseNI	ACTGG	4 cut(s)	359, 369, 631, 1194
BseRI	GAGGAG	8 cut(s)	1683, 1707, 1731, 1755, 1779, 1803, 1827, 1851
BseSI	GKGCMC	1 cut(s)	1095
BseXI	GCAGC	2 cut(s)	126, 1138
BseYI	CCCAGC	1 cut(s)	1634
Bsh1236I	CGCG	2 cut(s)	201, 401
BshFI	GGCC	7 cut(s)	435, 478, 1023, 1440, 1548, 1569, 1872
BshNI	GGYRCC	1 cut(s)	73
BsiHKAI	GWGCWC	2 cut(s)	119, 376
BsiHKCI	CYCGRG	1 cut(s)	1202
BsiSI	CCGG	5 cut(s)	71, 77, 475, 839, 1570
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	2 cut(s)	154, 1667
BsmAI	GTCTC	9 cut(s)	292, 305, 1208, 1392, 1665, 1713, 1761, 1809, 1833
BsmBI	CGTCTC	6 cut(s)	292, 305, 1665, 1761, 1809, 1833
BsmFI	GGGAC	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	318
BsnI	GGCC	7 cut(s)	435, 478, 1023, 1440, 1548, 1569, 1872
BsoBI	CYCGRG	1 cut(s)	1202
Bsp1286I	GDGCHC	4 cut(s)	119, 162, 376, 1095
Bsp143I	GATC	7 cut(s)	363, 500, 534, 826, 841, 868, 1279
Bsp19I	CCATGG	1 cut(s)	1549
BspACI	CCGC	8 cut(s)	82, 131, 142, 253, 265, 307, 834, 1898
BspANI	GGCC	7 cut(s)	435, 478, 1023, 1440, 1548, 1569, 1872
BspCNI	CTCAG	3 cut(s)	559, 601, 1625
BspFNI	CGCG	2 cut(s)	201, 401
BspLI	GGNNCC	6 cut(s)	75, 146, 159, 828, 1439, 1547
BspMAI	CTGCAG	1 cut(s)	583
BspPI	GGATC	6 cut(s)	358, 529, 821, 834, 849, 876
BspT107I	GGYRCC	1 cut(s)	73
BspTI	CTTAAG	1 cut(s)	16
BsrFI	RCCGGY	2 cut(s)	76, 474
BsrI	ACTGG	4 cut(s)	359, 369, 631, 1194
BssAI	RCCGGY	2 cut(s)	76, 474
BssECI	CCNNGG	5 cut(s)	430, 486, 1549, 1661, 1732
BssMI	GATC	7 cut(s)	363, 500, 534, 826, 841, 868, 1279
BssNI	GRCGYC	2 cut(s)	41, 87
BssT1I	CCWWGG	2 cut(s)	1549, 1732
Bst2UI	CCWGG	5 cut(s)	149, 432, 908, 1071, 1662
Bst6I	CTCTTC	2 cut(s)	858, 1858
BstACI	GRCGYC	2 cut(s)	41, 87
BstAFI	CTTAAG	1 cut(s)	16
BstBAI	YACGTR	2 cut(s)	1253, 1478
BstC8I	GCNNGC	3 cut(s)	476, 1143, 1149
BstDEI	CTNAG	5 cut(s)	567, 588, 1119, 1391, 1612
BstDSI	CCRYGG	1 cut(s)	1549
BstEII	GGTNACC	1 cut(s)	505
BstENI	CCTNNNNNAGG	1 cut(s)	152
BstF5I	GGATG	2 cut(s)	635, 1329
BstFNI	CGCG	2 cut(s)	201, 401
BstH2I	RGCGCY	1 cut(s)	1410
BstHHI	GCGC	4 cut(s)	201, 403, 1147, 1409
BstKTI	GATC	7 cut(s)	366, 503, 537, 829, 844, 871, 1282
BstMAI	GTCTC	9 cut(s)	292, 305, 1208, 1392, 1665, 1713, 1761, 1809, 1833
BstMBI	GATC	7 cut(s)	363, 500, 534, 826, 841, 868, 1279
BstMWI	GCNNNNNNNGC	8 cut(s)	315, 398, 639, 1151, 1157, 1415, 1545, 1904
BstNI	CCWGG	5 cut(s)	149, 432, 908, 1071, 1662
BstPI	GGTNACC	1 cut(s)	505
BstSCI	CCNGG	5 cut(s)	147, 430, 906, 1069, 1660
BstSFI	CTRYAG	3 cut(s)	442, 579, 1005
BstSLI	GKGCMC	1 cut(s)	1095
BstSNI	TACGTA	1 cut(s)	1253
BstUI	CGCG	2 cut(s)	201, 401
BstV1I	GCAGC	2 cut(s)	126, 1138
BstX2I	RGATCY	3 cut(s)	534, 826, 841
BstXI	CCANNNNNNTGG	1 cut(s)	1019
BstYI	RGATCY	3 cut(s)	534, 826, 841
BsuI	GTATCC	1 cut(s)	1352
BsuRI	GGCC	7 cut(s)	435, 478, 1023, 1440, 1548, 1569, 1872
BtgI	CCRYGG	1 cut(s)	1549
BtgZI	GCGATG	1 cut(s)	382
BtrI	CACGTC	1 cut(s)	114
BtsCI	GGATG	2 cut(s)	635, 1329
BtsI	GCAGTG	2 cut(s)	1216, 1495
BtsIMutI	CAGTG	6 cut(s)	175, 366, 376, 1216, 1428, 1495
Cac8I	GCNNGC	3 cut(s)	476, 1143, 1149
CfoI	GCGC	4 cut(s)	201, 403, 1147, 1409
Cfr10I	RCCGGY	2 cut(s)	76, 474
Cfr13I	GGNCC	6 cut(s)	1022, 1073, 1310, 1438, 1546, 1883
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	2 cut(s)	258, 1197
CviAII	CATG	7 cut(s)	437, 818, 980, 1399, 1550, 1781, 1908
CviQI	GTAC	2 cut(s)	258, 1197
DdeI	CTNAG	5 cut(s)	567, 588, 1119, 1391, 1612
DpnI	GATC	7 cut(s)	365, 502, 536, 828, 843, 870, 1281
DpnII	GATC	7 cut(s)	363, 500, 534, 826, 841, 868, 1279
DrdI	GACNNNNNNGTC	1 cut(s)	118
DriI	GACNNNNNGTC	1 cut(s)	40
DseDI	GACNNNNNNGTC	1 cut(s)	118
EaeI	YGGCCR	3 cut(s)	433, 1567, 1870
Eam1104I	CTCTTC	2 cut(s)	858, 1858
Eam1105I	GACNNNNNGTC	1 cut(s)	40
EarI	CTCTTC	2 cut(s)	858, 1858
Eco105I	TACGTA	1 cut(s)	1253
Eco130I	CCWWGG	2 cut(s)	1549, 1732
Eco24I	GRGCYC	1 cut(s)	162
Eco47I	GGWCC	3 cut(s)	1073, 1310, 1883
Eco57I	CTGAAG	2 cut(s)	1191, 1337
Eco88I	CYCGRG	1 cut(s)	1202
Eco91I	GGTNACC	1 cut(s)	505
EcoNI	CCTNNNNNAGG	1 cut(s)	152
EcoO65I	GGTNACC	1 cut(s)	505
EcoRI	GAATTC	3 cut(s)	1132, 1295, 1607
EcoRII	CCWGG	5 cut(s)	147, 430, 906, 1069, 1660
EcoT14I	CCWWGG	2 cut(s)	1549, 1732
EcoT22I	ATGCAT	1 cut(s)	1042
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	2 cut(s)	1549, 1732
Esp3I	CGTCTC	6 cut(s)	292, 305, 1665, 1761, 1809, 1833
FaeI	CATG	7 cut(s)	440, 821, 983, 1402, 1553, 1784, 1911
FalI	AAGNNNNNCTT	4 cut(s)	322, 354, 635, 667
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	7 cut(s)	436, 817, 979, 1398, 1549, 1780, 1907
FauI	CCCGC	3 cut(s)	75, 124, 841
FbaI	TGATCA	1 cut(s)	1279
Fnu4HI	GCNGC	3 cut(s)	140, 253, 1152
FokI	GGATG	2 cut(s)	642, 1316
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	3 cut(s)	140, 253, 1152
FspBI	CTAG	2 cut(s)	1098, 1188
GlaI	GCGC	4 cut(s)	200, 402, 1146, 1408
GluI	GCNGC	3 cut(s)	140, 253, 1152
GsaI	CCCAGC	1 cut(s)	1638
GsuI	CTGGAG	2 cut(s)	170, 342
HaeII	RGCGCY	1 cut(s)	1410
HaeIII	GGCC	7 cut(s)	435, 478, 1023, 1440, 1548, 1569, 1872
HapII	CCGG	5 cut(s)	71, 77, 475, 839, 1570
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	4 cut(s)	201, 403, 1147, 1409
Hin1I	GRCGYC	2 cut(s)	41, 87
Hin1II	CATG	7 cut(s)	440, 821, 983, 1402, 1553, 1784, 1911
Hin6I	GCGC	4 cut(s)	199, 401, 1145, 1407
HinP1I	GCGC	4 cut(s)	199, 401, 1145, 1407
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	1349
HinfI	GANTC	8 cut(s)	35, 67, 352, 458, 482, 522, 935, 992
HpaII	CCGG	5 cut(s)	71, 77, 475, 839, 1570
HphI	GGTGA	5 cut(s)	517, 622, 1413, 1544, 1721
Hpy166II	GTNNAC	3 cut(s)	66, 1597, 1883
Hpy188I	TCNGA	5 cut(s)	487, 591, 904, 940, 1340
Hpy188III	TCNNGA	7 cut(s)	106, 455, 824, 845, 1300, 1456, 1512
Hpy8I	GTNNAC	3 cut(s)	66, 1597, 1883
Hpy99I	CGWCG	6 cut(s)	43, 46, 95, 101, 124, 287
HpyAV	CCTTC	4 cut(s)	148, 1316, 1509, 1643
HpyCH4IV	ACGT	4 cut(s)	41, 113, 1252, 1477
HpyCH4V	TGCA	7 cut(s)	343, 386, 517, 581, 986, 1040, 1154
HpyF10VI	GCNNNNNNNGC	8 cut(s)	315, 398, 639, 1151, 1157, 1415, 1545, 1904
HpyF3I	CTNAG	5 cut(s)	567, 588, 1119, 1391, 1612
HpySE526I	ACGT	4 cut(s)	41, 113, 1252, 1477
Hsp92I	GRCGYC	2 cut(s)	41, 87
Hsp92II	CATG	7 cut(s)	440, 821, 983, 1402, 1553, 1784, 1911
HspAI	GCGC	4 cut(s)	199, 401, 1145, 1407
KroI	GCCGGC	1 cut(s)	474
KroNI	GCCGGC	1 cut(s)	476
Ksp22I	TGATCA	1 cut(s)	1279
Kzo9I	GATC	7 cut(s)	363, 500, 534, 826, 841, 868, 1279
LmnI	GCTCC	5 cut(s)	157, 187, 1120, 1186, 1572
Lsp1109I	GCAGC	2 cut(s)	126, 1138
LweI	GCATC	7 cut(s)	574, 620, 766, 1049, 1163, 1184, 1338
MaeI	CTAG	2 cut(s)	1098, 1188
MaeII	ACGT	4 cut(s)	41, 113, 1252, 1477
MaeIII	GTNAC	5 cut(s)	505, 610, 622, 1270, 1532
MalI	GATC	7 cut(s)	365, 502, 536, 828, 843, 870, 1281
MboI	GATC	7 cut(s)	363, 500, 534, 826, 841, 868, 1279
MboII	GAAGA	8 cut(s)	61, 239, 410, 544, 749, 875, 1028, 1875
MfeI	CAATTG	1 cut(s)	1044
MflI	RGATCY	3 cut(s)	534, 826, 841
MhlI	GDGCHC	4 cut(s)	119, 162, 376, 1095
MlsI	TGGCCA	1 cut(s)	435
MluNI	TGGCCA	1 cut(s)	435
MlyI	GAGTC	2 cut(s)	29, 61
MmeI	TCCRAC	1 cut(s)	1208
Mox20I	TGGCCA	1 cut(s)	435
Mph1103I	ATGCAT	1 cut(s)	1042
MroNI	GCCGGC	1 cut(s)	474
MroXI	GAANNNNTTC	1 cut(s)	1498
MscI	TGGCCA	1 cut(s)	435
MseI	TTAA	4 cut(s)	17, 326, 635, 768
MslI	CAYNNNNRTG	1 cut(s)	107
Msp20I	TGGCCA	1 cut(s)	435
MspA1I	CMGCKG	1 cut(s)	1151
MspCI	CTTAAG	1 cut(s)	16
MspI	CCGG	5 cut(s)	71, 77, 475, 839, 1570
MspR9I	CCNGG	5 cut(s)	149, 432, 908, 1071, 1662
MunI	CAATTG	1 cut(s)	1044
Mva1269I	GAATGC	1 cut(s)	318
MvaI	CCWGG	5 cut(s)	149, 432, 908, 1071, 1662
MvnI	CGCG	2 cut(s)	201, 401
MwoI	GCNNNNNNNGC	8 cut(s)	315, 398, 639, 1151, 1157, 1415, 1545, 1904
NaeI	GCCGGC	1 cut(s)	476
NcoI	CCATGG	1 cut(s)	1549
NdeII	GATC	7 cut(s)	363, 500, 534, 826, 841, 868, 1279
NgoMIV	GCCGGC	1 cut(s)	474
NlaIII	CATG	7 cut(s)	440, 821, 983, 1402, 1553, 1784, 1911
NlaIV	GGNNCC	6 cut(s)	75, 146, 159, 828, 1439, 1547
NmuCI	GTSAC	4 cut(s)	505, 610, 1270, 1532
NsiI	ATGCAT	1 cut(s)	1042
PaeR7I	CTCGAG	1 cut(s)	1202
PcsI	WCGNNNNNNNCGW	5 cut(s)	38, 44, 93, 119, 1636
PctI	GAATGC	1 cut(s)	318
PdiI	GCCGGC	1 cut(s)	476
PdmI	GAANNNNTTC	1 cut(s)	1498
PfeI	GAWTC	6 cut(s)	352, 458, 482, 522, 935, 992
PflFI	GACNNNGTC	1 cut(s)	89
PfoI	TCCNGGA	1 cut(s)	1069
PkrI	GCNGC	3 cut(s)	141, 254, 1153
PleI	GAGTC	2 cut(s)	29, 61
PpsI	GAGTC	2 cut(s)	29, 61
Ppu21I	YACGTR	2 cut(s)	1253, 1478
PsiI	TTATAA	1 cut(s)	600
Psp6I	CCWGG	5 cut(s)	147, 430, 906, 1069, 1660
PspEI	GGTNACC	1 cut(s)	505
PspFI	CCCAGC	1 cut(s)	1634
PspGI	CCWGG	5 cut(s)	147, 430, 906, 1069, 1660
PspN4I	GGNNCC	6 cut(s)	75, 146, 159, 828, 1439, 1547
PspPI	GGNCC	6 cut(s)	1022, 1073, 1310, 1438, 1546, 1883
PspXI	VCTCGAGB	1 cut(s)	1202
PstI	CTGCAG	1 cut(s)	583
PsuI	RGATCY	3 cut(s)	534, 826, 841
PsyI	GACNNNGTC	1 cut(s)	89
PvuII	CAGCTG	1 cut(s)	1151
RsaI	GTAC	2 cut(s)	259, 1198
RsaNI	GTAC	2 cut(s)	258, 1197
RseI	CAYNNNNRTG	1 cut(s)	107
SaqAI	TTAA	4 cut(s)	17, 326, 635, 768
SatI	GCNGC	3 cut(s)	140, 253, 1152
Sau3AI	GATC	7 cut(s)	363, 500, 534, 826, 841, 868, 1279
Sau96I	GGNCC	6 cut(s)	1022, 1073, 1310, 1438, 1546, 1883
SchI	GAGTC	2 cut(s)	29, 61
ScrFI	CCNGG	5 cut(s)	149, 432, 908, 1071, 1662
SduI	GDGCHC	4 cut(s)	119, 162, 376, 1095
SfaNI	GCATC	7 cut(s)	574, 620, 766, 1049, 1163, 1184, 1338
SfcI	CTRYAG	3 cut(s)	442, 579, 1005
Sfr274I	CTCGAG	1 cut(s)	1202
SinI	GGWCC	3 cut(s)	1073, 1310, 1883
SlaI	CTCGAG	1 cut(s)	1202
SmiMI	CAYNNNNRTG	1 cut(s)	107
SmlI	CTYRAG	6 cut(s)	16, 375, 855, 1202, 1264, 1286
SmoI	CTYRAG	6 cut(s)	16, 375, 855, 1202, 1264, 1286
SnaBI	TACGTA	1 cut(s)	1253
SsiI	CCGC	8 cut(s)	82, 131, 142, 253, 265, 307, 834, 1898
SspMI	CTAG	2 cut(s)	1098, 1188
StyD4I	CCNGG	5 cut(s)	147, 430, 906, 1069, 1660
StyI	CCWWGG	2 cut(s)	1549, 1732
TaiI	ACGT	4 cut(s)	44, 116, 1255, 1480
TaqI	TCGA	8 cut(s)	38, 59, 107, 1203, 1455, 1618, 1630, 1657
TauI	GCSGC	1 cut(s)	255
TfiI	GAWTC	6 cut(s)	352, 458, 482, 522, 935, 992
Tru1I	TTAA	4 cut(s)	17, 326, 635, 768
Tru9I	TTAA	4 cut(s)	17, 326, 635, 768
TscAI	CASTG	6 cut(s)	175, 366, 376, 1216, 1435, 1495
TseFI	GTSAC	4 cut(s)	505, 610, 1270, 1532
TseI	GCWGC	2 cut(s)	139, 1151
Tsp45I	GTSAC	4 cut(s)	505, 610, 1270, 1532
TspDTI	ATGAA	5 cut(s)	199, 385, 410, 1415, 1491
TspGWI	ACGGA	3 cut(s)	47, 287, 312
TspRI	CASTG	6 cut(s)	175, 366, 376, 1216, 1435, 1495
Tth111I	GACNNNGTC	1 cut(s)	89
Vha464I	CTTAAG	1 cut(s)	16
VpaK11BI	GGWCC	3 cut(s)	1073, 1310, 1883
XagI	CCTNNNNNAGG	1 cut(s)	152
XapI	RAATTY	6 cut(s)	662, 1132, 1295, 1304, 1379, 1607
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1556
XhoI	CTCGAG	1 cut(s)	1202
XmnI	GAANNNNTTC	1 cut(s)	1498
XspI	CTAG	2 cut(s)	1098, 1188
ZraI	GACGTC	1 cut(s)	42
Zsp2I	ATGCAT	1 cut(s)	1042

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.