Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013703

Physical Location & Seq

Genomic Coordinates Reverse (-)

64837296 .. 64840215

Gene Structure 2920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0517400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGCTCTTATCTCCCTTGTCCCAGACCTTTTTGAACCACAAACTCATTGACAAATGGGTTGTTGTCAACTTCCCTTTGGGAAATTCTGATACAAGTCGCATCTTAAGGCAGCTTTGTGACACTGGGAGGAAGAAGGACTTTGTAGGTTACACCAACTGGGCACCTGAATTTTTTTTTTTTTTTTTAACTTTTTTTTTTTTAACTGATGCTAATCTGTGCGGCGTATTGAGCACCCTATCACATTGCTTGAGGAACAACCACAGTTCAAAAGACAAAGCCCTAGTAAGAGTTGATAAGATGTTTGCACAGATTCAAGCCAAGCTTCCTGAAAAGCCACCAAACTTCATTTTCTTCGTTTTACCAGAAAGAAAAACTTCTGATATATATGCTTGGAGGAATAAATTCTTTGTTGGAACACTGAGAGCGGCTGTAAGGACACAAAAAGTTTGTAAGGAGATGATTGATTCTCTGTACAAGCCACTGGAAAGTGGAGAAGATGATGGTATTATGAGGGAACTGCTTAAGGAATTCTATGAAACTAGCAAATGCAAACCAACTCAGATTATTATCTTCAGGGATGGAGTCAGCGAATCGAAATTTAATCAAGTTTTGAATAAGGAGCTGGATCAAATTATGAAGGCTTACAAGCACCACCAGAAGGTTGATGAGCTTCCAAAATTTACTGTGATTGTGGCTCAAAAGAACCATAATACAAAGCTATTCCAAGCTGGAATAGTTGTGGACACAAATATTGTGCATCCAAGGAATTATGATTTCTATATGTGTGCTCACAAAGGCTCCATTGGAACTTCTAGGCCAGCACACTATCATGTCTTGCTCGATGAGATTGGCTTTTCTGCCAATGAACTGCAAAACCTGATCCACTCTCTTTCCTATGTGTACCACCAGAGGAGTACAACTGCAGTCTCAATTGCACAAGTAATGCAGTTTATGAAGTTTGAAGATCTCTCGGAAACTTCATCATCAGGAAGGGTCAGTGTCACTACATCAGAGAGTATCCCAGTGCCTGAGCTCCCTAGGCTTCATGAGAAGGTCCGCGGTTCCATGTTCTTCTGTTTATCAGATTGCCGCTGCTTCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

367

Amino Acids

42.3

Weight (kDa)

8.92

Isoelectric Point (pI)

31.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Piwi	PF02171	140 - 316	4.8e-53	Piwi domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46800 FvH4_6g46800
malus_domestica	MD09G1067300.v1.1 MD17G1060400.v1.1
prunus_persica	Prupe.3G254500_v2.0.a1
pyrus_communis	pycom17g06010
rosa_chinensis	RchiOBHm_Chr2g0165791
rosa_laevigata	RLG00000021554
rosa_multiflora	Rmu_sc0003227.1_g000012
rosa_roxburghii	Rroxscaffold_2G00085520
rosa_rugosa	Rorug02G0517400 Rorug02G0517500 Rorug02G0517600
rosa_samantha	Rh2AG583100 Rh2BG595200 Rh2CG565800 Rh2DG605000
rosa_wichuraiana	Rw2G048640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	160
AccBSI	CCGCTC	1 cut(s)	425
AccII	CGCG	1 cut(s)	1059
AciI	CCGC	5 cut(s)	219, 425, 1057, 1059, 1090
AclWI	GGATC	2 cut(s)	633, 874
AcsI	RAATTY	6 cut(s)	82, 167, 401, 527, 596, 677
AcuI	CTGAAG	1 cut(s)	556
AfaI	GTAC	3 cut(s)	473, 902, 916
AfiI	CCNNNNNNNGG	1 cut(s)	658
AflII	CTTAAG	2 cut(s)	103, 521
AgsI	TTSAA	5 cut(s)	34, 267, 314, 613, 962
AluBI	AGCT	7 cut(s)	112, 322, 622, 670, 718, 728, 1033
AluI	AGCT	7 cut(s)	112, 322, 622, 670, 718, 728, 1033
Alw21I	GWGCWC	3 cut(s)	233, 790, 1035
Alw26I	GTCTC	1 cut(s)	931
AlwI	GGATC	2 cut(s)	633, 874
AlwNI	CAGNNNCTG	1 cut(s)	1028
AoxI	GGCC	1 cut(s)	815
ApeKI	GCWGC	2 cut(s)	109, 1092
ApoI	RAATTY	6 cut(s)	82, 167, 401, 527, 596, 677
Asp700I	GAANNNNTTC	2 cut(s)	373, 401
AspA2I	CCTAGG	1 cut(s)	1037
AspS9I	GGNCC	1 cut(s)	1054
AvaII	GGWCC	1 cut(s)	1054
AvrII	CCTAGG	1 cut(s)	1037
BaeGI	GKGCMC	1 cut(s)	163
BanI	GGYRCC	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	1035
Bbv12I	GWGCWC	3 cut(s)	233, 790, 1035
BbvI	GCAGC	2 cut(s)	121, 1079
BccI	CCATC	2 cut(s)	494, 572
BciVI	GTATCC	1 cut(s)	1028
BcoDI	GTCTC	1 cut(s)	931
BfaI	CTAG	5 cut(s)	281, 540, 813, 1038, 1102
BfmI	CTRYAG	1 cut(s)	921
BfrI	CTTAAG	2 cut(s)	103, 521
BfuI	GTATCC	1 cut(s)	1028
BglII	AGATCT	1 cut(s)	964
BisI	GCNGC	5 cut(s)	110, 220, 426, 1090, 1093
BlnI	CCTAGG	1 cut(s)	1037
BlsI	GCNGC	5 cut(s)	111, 221, 427, 1091, 1094
Bme18I	GGWCC	1 cut(s)	1054
BmgT120I	GGNCC	1 cut(s)	1054
BmiI	GGNNCC	3 cut(s)	162, 799, 1063
BmrI	ACTGGG	3 cut(s)	132, 166, 1016
BmsI	GCATC	3 cut(s)	108, 196, 766
BmuI	ACTGGG	3 cut(s)	132, 166, 1016
Bpu10I	CCTNAGC	1 cut(s)	1029
BpuEI	CTTGAG	1 cut(s)	268
BsaBI	GATNNNNATC	2 cut(s)	210, 566
BsaJI	CCNNGG	3 cut(s)	761, 1037, 1057
BsaXI	ACNNNNNCTCC	2 cut(s)	782, 812
Bsc4I	CCNNNNNNNGG	1 cut(s)	658
Bse1I	ACTGG	4 cut(s)	127, 161, 486, 1022
Bse3DI	GCAATG	1 cut(s)	241
Bse8I	GATNNNNATC	2 cut(s)	210, 566
BseDI	CCNNGG	3 cut(s)	761, 1037, 1057
BseGI	GGATG	2 cut(s)	583, 757
BseJI	GATNNNNATC	2 cut(s)	210, 566
BseLI	CCNNNNNNNGG	1 cut(s)	658
BseMI	GCAATG	1 cut(s)	241
BseMII	CTCAG	3 cut(s)	410, 572, 1020
BseNI	ACTGG	4 cut(s)	127, 161, 486, 1022
BseRI	GAGGAG	1 cut(s)	925
BseSI	GKGCMC	1 cut(s)	163
BseXI	GCAGC	2 cut(s)	121, 1079
Bsh1236I	CGCG	1 cut(s)	1059
BshFI	GGCC	1 cut(s)	817
BshNI	GGYRCC	1 cut(s)	160
BsiHKAI	GWGCWC	3 cut(s)	233, 790, 1035
BslFI	GGGAC	1 cut(s)	4
BslI	CCNNNNNNNGG	1 cut(s)	658
BsmAI	GTCTC	1 cut(s)	931
BsmFI	GGGAC	1 cut(s)	4
BsnI	GGCC	1 cut(s)	817
Bsp1286I	GDGCHC	4 cut(s)	163, 233, 790, 1035
Bsp1407I	TGTACA	1 cut(s)	471
Bsp143I	GATC	3 cut(s)	625, 879, 964
BspACI	CCGC	5 cut(s)	219, 425, 1057, 1059, 1090
BspANI	GGCC	1 cut(s)	817
BspCNI	CTCAG	3 cut(s)	411, 571, 1021
BspFNI	CGCG	1 cut(s)	1059
BspHI	TCATGA	1 cut(s)	1045
BspLI	GGNNCC	3 cut(s)	162, 799, 1063
BspMAI	CTGCAG	1 cut(s)	925
BspPI	GGATC	2 cut(s)	633, 874
BspT107I	GGYRCC	1 cut(s)	160
BspTI	CTTAAG	2 cut(s)	103, 521
BsrBI	CCGCTC	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	241
BsrGI	TGTACA	1 cut(s)	471
BsrI	ACTGG	4 cut(s)	127, 161, 486, 1022
BssECI	CCNNGG	3 cut(s)	761, 1037, 1057
BssMI	GATC	3 cut(s)	625, 879, 964
BssT1I	CCWWGG	2 cut(s)	761, 1037
Bst4CI	ACNGT	2 cut(s)	263, 685
BstAFI	CTTAAG	2 cut(s)	103, 521
BstAUI	TGTACA	1 cut(s)	471
BstC8I	GCNNGC	1 cut(s)	819
BstDEI	CTNAG	3 cut(s)	419, 558, 1029
BstDSI	CCRYGG	1 cut(s)	1057
BstF5I	GGATG	2 cut(s)	583, 757
BstFNI	CGCG	1 cut(s)	1059
BstKTI	GATC	3 cut(s)	628, 882, 967
BstMAI	GTCTC	1 cut(s)	931
BstMBI	GATC	3 cut(s)	625, 879, 964
BstMWI	GCNNNNNNNGC	2 cut(s)	228, 1039
BstSFI	CTRYAG	1 cut(s)	921
BstSLI	GKGCMC	1 cut(s)	163
BstUI	CGCG	1 cut(s)	1059
BstV1I	GCAGC	2 cut(s)	121, 1079
BstX2I	RGATCY	1 cut(s)	964
BstYI	RGATCY	1 cut(s)	964
BsuI	GTATCC	1 cut(s)	1028
BsuRI	GGCC	1 cut(s)	817
BtgI	CCRYGG	1 cut(s)	1057
BtsCI	GGATG	2 cut(s)	583, 757
BtsIMutI	CAGTG	5 cut(s)	120, 416, 479, 1003, 1029
Cac8I	GCNNGC	1 cut(s)	819
CaiI	CAGNNNCTG	1 cut(s)	1028
CciI	TCATGA	1 cut(s)	1045
Cfr13I	GGNCC	1 cut(s)	1054
Cfr42I	CCGCGG	1 cut(s)	1060
Csp6I	GTAC	3 cut(s)	472, 901, 915
CviAII	CATG	3 cut(s)	830, 1046, 1066
CviQI	GTAC	3 cut(s)	472, 901, 915
DdeI	CTNAG	3 cut(s)	419, 558, 1029
DpnI	GATC	3 cut(s)	627, 881, 966
DpnII	GATC	3 cut(s)	625, 879, 964
Ecl136II	GAGCTC	1 cut(s)	1033
Eco130I	CCWWGG	2 cut(s)	761, 1037
Eco24I	GRGCYC	1 cut(s)	1035
Eco47I	GGWCC	1 cut(s)	1054
Eco53kI	GAGCTC	1 cut(s)	1033
Eco57I	CTGAAG	1 cut(s)	556
EcoICRI	GAGCTC	1 cut(s)	1033
EcoRI	GAATTC	1 cut(s)	527
EcoT14I	CCWWGG	2 cut(s)	761, 1037
EcoT38I	GRGCYC	1 cut(s)	1035
ErhI	CCWWGG	2 cut(s)	761, 1037
FaeI	CATG	3 cut(s)	833, 1049, 1069
FalI	AAGNNNNNCTT	6 cut(s)	122, 154, 306, 338, 358, 390
FaqI	GGGAC	1 cut(s)	4
FatI	CATG	3 cut(s)	829, 1045, 1065
Fnu4HI	GCNGC	5 cut(s)	110, 220, 426, 1090, 1093
FokI	GGATG	2 cut(s)	590, 744
FriOI	GRGCYC	1 cut(s)	1035
Fsp4HI	GCNGC	5 cut(s)	110, 220, 426, 1090, 1093
FspBI	CTAG	5 cut(s)	281, 540, 813, 1038, 1102
GluI	GCNGC	5 cut(s)	110, 220, 426, 1090, 1093
HaeIII	GGCC	1 cut(s)	817
Hin1II	CATG	3 cut(s)	833, 1049, 1069
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	4 cut(s)	310, 464, 582, 590
Hpy166II	GTNNAC	3 cut(s)	67, 742, 901
Hpy188I	TCNGA	6 cut(s)	88, 379, 561, 973, 1012, 1084
Hpy188III	TCNNGA	3 cut(s)	326, 987, 1046
Hpy8I	GTNNAC	3 cut(s)	67, 742, 901
HpyAV	CCTTC	5 cut(s)	127, 631, 652, 984, 1045
HpyCH4III	ACNGT	2 cut(s)	263, 685
HpyCH4V	TGCA	7 cut(s)	305, 549, 757, 871, 923, 935, 946
HpyF10VI	GCNNNNNNNGC	2 cut(s)	228, 1039
HpyF3I	CTNAG	3 cut(s)	419, 558, 1029
Hsp92II	CATG	3 cut(s)	833, 1049, 1069
KspI	CCGCGG	1 cut(s)	1060
Kzo9I	GATC	3 cut(s)	625, 879, 964
LmnI	GCTCC	3 cut(s)	619, 803, 1038
Lsp1109I	GCAGC	2 cut(s)	121, 1079
LweI	GCATC	3 cut(s)	108, 196, 766
MaeI	CTAG	5 cut(s)	281, 540, 813, 1038, 1102
MaeIII	GTNAC	3 cut(s)	116, 146, 1000
MalI	GATC	3 cut(s)	627, 881, 966
MbiI	CCGCTC	1 cut(s)	425
MboI	GATC	3 cut(s)	625, 879, 964
MboII	GAAGA	6 cut(s)	142, 343, 506, 562, 974, 1063
MfeI	CAATTG	1 cut(s)	930
MflI	RGATCY	1 cut(s)	964
MhlI	GDGCHC	4 cut(s)	163, 233, 790, 1035
MluCI	AATT	9 cut(s)	82, 167, 401, 527, 596, 630, 677, 766, 930
MlyI	GAGTC	1 cut(s)	591
MmeI	TCCRAC	1 cut(s)	391
MnlI	CCTC	5 cut(s)	120, 243, 387, 504, 903
MroXI	GAANNNNTTC	2 cut(s)	373, 401
MseI	TTAA	5 cut(s)	104, 185, 200, 522, 600
MslI	CAYNNNNRTG	1 cut(s)	828
MspA1I	CMGCKG	2 cut(s)	1059, 1092
MspCI	CTTAAG	2 cut(s)	103, 521
MunI	CAATTG	1 cut(s)	930
MvnI	CGCG	1 cut(s)	1059
MwoI	GCNNNNNNNGC	2 cut(s)	228, 1039
NdeII	GATC	3 cut(s)	625, 879, 964
NlaIII	CATG	3 cut(s)	833, 1049, 1069
NlaIV	GGNNCC	3 cut(s)	162, 799, 1063
NmuCI	GTSAC	2 cut(s)	116, 1000
PagI	TCATGA	1 cut(s)	1045
PdmI	GAANNNNTTC	2 cut(s)	373, 401
PfeI	GAWTC	3 cut(s)	310, 464, 590
PkrI	GCNGC	5 cut(s)	111, 221, 427, 1091, 1094
PleI	GAGTC	1 cut(s)	590
PpsI	GAGTC	1 cut(s)	590
Psp124BI	GAGCTC	1 cut(s)	1035
PspN4I	GGNNCC	3 cut(s)	162, 799, 1063
PspPI	GGNCC	1 cut(s)	1054
PstI	CTGCAG	1 cut(s)	925
PstNI	CAGNNNCTG	1 cut(s)	1028
PsuI	RGATCY	1 cut(s)	964
RsaI	GTAC	3 cut(s)	473, 902, 916
RsaNI	GTAC	3 cut(s)	472, 901, 915
RseI	CAYNNNNRTG	1 cut(s)	828
SacI	GAGCTC	1 cut(s)	1035
SacII	CCGCGG	1 cut(s)	1060
SaqAI	TTAA	5 cut(s)	104, 185, 200, 522, 600
SatI	GCNGC	5 cut(s)	110, 220, 426, 1090, 1093
Sau3AI	GATC	3 cut(s)	625, 879, 964
Sau96I	GGNCC	1 cut(s)	1054
SchI	GAGTC	1 cut(s)	591
SduI	GDGCHC	4 cut(s)	163, 233, 790, 1035
SfaNI	GCATC	3 cut(s)	108, 196, 766
SfcI	CTRYAG	1 cut(s)	921
Sfr303I	CCGCGG	1 cut(s)	1060
SgrBI	CCGCGG	1 cut(s)	1060
SinI	GGWCC	1 cut(s)	1054
SmiMI	CAYNNNNRTG	1 cut(s)	828
SmlI	CTYRAG	3 cut(s)	103, 247, 521
SmoI	CTYRAG	3 cut(s)	103, 247, 521
Sse9I	AATT	9 cut(s)	82, 167, 401, 527, 596, 630, 677, 766, 930
SsiI	CCGC	5 cut(s)	219, 425, 1057, 1059, 1090
SspI	AATATT	1 cut(s)	751
SspMI	CTAG	5 cut(s)	281, 540, 813, 1038, 1102
SstI	GAGCTC	1 cut(s)	1035
StyI	CCWWGG	2 cut(s)	761, 1037
TaaI	ACNGT	2 cut(s)	263, 685
TaqI	TCGA	2 cut(s)	593, 840
TasI	AATT	9 cut(s)	82, 167, 401, 527, 596, 630, 677, 766, 930
TatI	WGTACW	2 cut(s)	471, 914
TauI	GCSGC	3 cut(s)	222, 428, 1092
TfiI	GAWTC	3 cut(s)	310, 464, 590
Tru1I	TTAA	5 cut(s)	104, 185, 200, 522, 600
Tru9I	TTAA	5 cut(s)	104, 185, 200, 522, 600
TscAI	CASTG	5 cut(s)	127, 423, 486, 1003, 1029
TseFI	GTSAC	2 cut(s)	116, 1000
TseI	GCWGC	2 cut(s)	109, 1092
Tsp45I	GTSAC	2 cut(s)	116, 1000
TspDTI	ATGAA	8 cut(s)	334, 549, 650, 879, 968, 969, 1034, 1087
TspRI	CASTG	5 cut(s)	127, 423, 486, 1003, 1029
Vha464I	CTTAAG	2 cut(s)	103, 521
VpaK11BI	GGWCC	1 cut(s)	1054
XapI	RAATTY	6 cut(s)	82, 167, 401, 527, 596, 677
XmaJI	CCTAGG	1 cut(s)	1037
XmnI	GAANNNNTTC	2 cut(s)	373, 401
XspI	CTAG	5 cut(s)	281, 540, 813, 1038, 1102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.