Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0013703

Physical Location & Seq

Genomic Coordinates Forward (+)

76207280 .. 76212299

Gene Structure 5020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G048640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGCTTTGCAGACAGCGATTCCTCCAGTGATCCCCAGTGCTCAAGTTGTTGCAAATGCTTTCATCGCGCAGTATTACCATATTCTTCATCACAACCCTGGCCATGTCTATAGATTTTATCAGGATTCAAGTGTGATGAGCCGGCCTGATTTCGACGGTGTGATGAGATCGGTGACCACGATGCAAGGAATCAATGAGAAAATCCTTTCCTTTGATTACAAGGAATATAAGGCAGAGATAGAAACAGCAGATGCTCAGAACTCTTATAAAGATGGGGTGACTGTGTTAGTTACTGGATGCTTGACAAGCAAGGATAACTTGAAAAGGAAATTCGCTCAATCATTTTTTCTTGCCCCACAAGAGAATGGTTTTTTTGTATTGAATGATGTCTTTAGGTATGTAGAAGATGGAGAACTGTTGAAAAACCATTCAGTTAATAATGATGCCACAACAGTCCACTTTAACCAAGAACCAGAACCAACTCATGTTCTGGATCCTCCCACACCGGATCTGGAAACTACTCAAGTTGAAGAGGATCAATTTGTTATTGAGAAAGCTTTTGACACATCGGACCAGGATAGACAATCAGCTAATGAGAAAGAATCTGATACCGAACGCCCATCTTATTCAAATGGGAATGATGTCCATGTTGCAGTTGAATCAACTTCTACTACAGCCCAAGAAGATGGCCCAAAGCAGTCTTATGCATCAATTGTAAAAGTAGCCAAAGGAAGTCCAGGACCAAATAAAGTTTATGTGCCCACTAACACCGTAAAAGTTGCTCCTAAGAAAACAGAGAATTCTTTGCCTGCACCAGCTGCATCTGCTTCTGTGCCTGAAGCATCAGATCCAACTAGCACCAGTACTCTTGAGGGCAGTGAGACTAATGAGGAAGTTGAGGGCTATTCTATATACATACGTAATTTGCCCTTGAGTGTGACGGCTGATCAGCTTGAGGTTGAATTCAAGAAATTTGGACCAATAAAGGAAGGAGGCATCCAAGTCCGAAATAAGAAGCTTCAGGGATACTGTTTTGGATTTGTTGAATTTCTGTCTCTAAGTTCCATGAATAGCGCCATTCAGGCTTCACCAATCACTGTTGGGGGCCGTCAAGCTATCATCGAGATAAAGAGAACTAACACACGTAGTAAGTGTAATATGTTTTTTAAAGTAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

392

Amino Acids

43.32

Weight (kDa)

5.12

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTF2	PF02136	17 - 133	5.6e-31	Nuclear transport factor 2 (NTF2) domain
RRM_1	PF00076	304 - 369	1.6e-10	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46800 FvH4_6g46800
malus_domestica	MD09G1067300.v1.1 MD17G1060400.v1.1
prunus_persica	Prupe.3G254500_v2.0.a1
pyrus_communis	pycom17g06010
rosa_chinensis	RchiOBHm_Chr2g0165791
rosa_laevigata	RLG00000021554
rosa_multiflora	Rmu_sc0003227.1_g000012
rosa_roxburghii	Rroxscaffold_2G00085520
rosa_rugosa	Rorug02G0517400 Rorug02G0517500 Rorug02G0517600
rosa_samantha	Rh2AG583100 Rh2BG595200 Rh2CG565800 Rh2DG605000
rosa_wichuraiana	Rw2G048640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	267
AccII	CGCG	1 cut(s)	68
AclWI	GGATC	6 cut(s)	25, 488, 501, 516, 543, 842
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	5 cut(s)	329, 799, 962, 971, 1046
AcuI	CTGAAG	2 cut(s)	858, 1004
AfaI	GTAC	1 cut(s)	865
AflIII	ACRYGT	1 cut(s)	1142
AjnI	CCWGG	3 cut(s)	97, 573, 736
AluBI	AGCT	6 cut(s)	557, 590, 818, 952, 1018, 1115
AluI	AGCT	6 cut(s)	557, 590, 818, 952, 1018, 1115
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	2 cut(s)	875, 1059
AlwI	GGATC	6 cut(s)	25, 488, 501, 516, 543, 842
AoxI	GGCC	4 cut(s)	100, 143, 688, 1105
ApeKI	GCWGC	1 cut(s)	818
ApoI	RAATTY	5 cut(s)	329, 799, 962, 971, 1046
AspLEI	GCGC	2 cut(s)	70, 1076
AspS9I	GGNCC	5 cut(s)	571, 689, 740, 977, 1105
AsuHPI	GGTGA	3 cut(s)	184, 289, 1080
AvaII	GGWCC	3 cut(s)	571, 740, 977
BaeGI	GKGCMC	1 cut(s)	762
BalI	TGGCCA	1 cut(s)	102
BamHI	GGATCC	1 cut(s)	493
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	805
BccI	CCATC	4 cut(s)	266, 401, 628, 680
BceAI	ACGGC	2 cut(s)	957, 1092
BciT130I	CCWGG	3 cut(s)	99, 575, 738
BciVI	GTATCC	1 cut(s)	1019
BclI	TGATCA	1 cut(s)	946
BcoDI	GTCTC	2 cut(s)	875, 1059
BfaI	CTAG	1 cut(s)	855
BfmI	CTRYAG	2 cut(s)	109, 672
BfoI	RGCGCY	1 cut(s)	1077
BfuI	GTATCC	1 cut(s)	1019
BglI	GCCNNNNNGGC	1 cut(s)	1082
BisI	GCNGC	1 cut(s)	819
BlsI	GCNGC	1 cut(s)	820
BmcAI	AGTACT	1 cut(s)	865
Bme1390I	CCNGG	3 cut(s)	99, 575, 738
Bme18I	GGWCC	3 cut(s)	571, 740, 977
BmgT120I	GGNCC	5 cut(s)	571, 689, 740, 977, 1105
BmiI	GGNNCC	2 cut(s)	495, 1106
BmrFI	CCNGG	3 cut(s)	99, 575, 738
BmrI	ACTGGG	1 cut(s)	30
BmsI	GCATC	8 cut(s)	171, 241, 287, 433, 716, 830, 851, 1005
BmuI	ACTGGG	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	9
BpuEI	CTTGAG	5 cut(s)	27, 507, 890, 952, 974
BsaAI	YACGTR	2 cut(s)	920, 1145
BsaJI	CCNNGG	1 cut(s)	97
BsaWI	WCCGGW	1 cut(s)	505
Bse118I	RCCGGY	1 cut(s)	141
Bse1I	ACTGG	4 cut(s)	26, 36, 298, 861
BseBI	CCWGG	3 cut(s)	99, 575, 738
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	2 cut(s)	302, 996
BseMII	CTCAG	1 cut(s)	269
BseNI	ACTGG	4 cut(s)	26, 36, 298, 861
BseSI	GKGCMC	1 cut(s)	762
BseXI	GCAGC	1 cut(s)	805
BsgI	GTGCAG	1 cut(s)	795
Bsh1236I	CGCG	1 cut(s)	68
BshFI	GGCC	4 cut(s)	102, 145, 690, 1107
BsiHKAI	GWGCWC	1 cut(s)	43
BsiSI	CCGG	2 cut(s)	142, 506
BsmAI	GTCTC	2 cut(s)	875, 1059
BsnI	GGCC	4 cut(s)	102, 145, 690, 1107
Bsp1286I	GDGCHC	2 cut(s)	43, 762
Bsp143I	GATC	7 cut(s)	30, 167, 493, 508, 535, 847, 946
BspANI	GGCC	4 cut(s)	102, 145, 690, 1107
BspCNI	CTCAG	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	2 cut(s)	495, 1106
BspPI	GGATC	6 cut(s)	25, 488, 501, 516, 543, 842
BsrFI	RCCGGY	1 cut(s)	141
BsrI	ACTGG	4 cut(s)	26, 36, 298, 861
BssAI	RCCGGY	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	7 cut(s)	30, 167, 493, 508, 535, 847, 946
Bst2UI	CCWGG	3 cut(s)	99, 575, 738
Bst4CI	ACNGT	7 cut(s)	158, 283, 417, 454, 772, 1031, 1099
Bst6I	CTCTTC	1 cut(s)	525
BstAPI	GCANNNNNTGC	1 cut(s)	818
BstBAI	YACGTR	2 cut(s)	920, 1145
BstC8I	GCNNGC	2 cut(s)	143, 810
BstDEI	CTNAG	3 cut(s)	255, 786, 1058
BstEII	GGTNACC	1 cut(s)	172
BstF5I	GGATG	2 cut(s)	302, 996
BstFNI	CGCG	1 cut(s)	68
BstH2I	RGCGCY	1 cut(s)	1077
BstHHI	GCGC	2 cut(s)	70, 1076
BstKTI	GATC	7 cut(s)	33, 170, 496, 511, 538, 850, 949
BstMAI	GTCTC	2 cut(s)	875, 1059
BstMBI	GATC	7 cut(s)	30, 167, 493, 508, 535, 847, 946
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 306, 818, 824, 1082
BstNI	CCWGG	3 cut(s)	99, 575, 738
BstPI	GGTNACC	1 cut(s)	172
BstSCI	CCNGG	3 cut(s)	97, 573, 736
BstSFI	CTRYAG	2 cut(s)	109, 672
BstSLI	GKGCMC	1 cut(s)	762
BstSNI	TACGTA	1 cut(s)	920
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	805
BstX2I	RGATCY	3 cut(s)	493, 508, 847
BstXI	CCANNNNNNTGG	1 cut(s)	686
BstYI	RGATCY	3 cut(s)	493, 508, 847
BsuI	GTATCC	1 cut(s)	1019
BsuRI	GGCC	4 cut(s)	102, 145, 690, 1107
BtgZI	GCGATG	1 cut(s)	49
BtsCI	GGATG	2 cut(s)	302, 996
BtsI	GCAGTG	1 cut(s)	883
BtsIMutI	CAGTG	4 cut(s)	33, 43, 883, 1095
Cac8I	GCNNGC	2 cut(s)	143, 810
CfoI	GCGC	2 cut(s)	70, 1076
Cfr10I	RCCGGY	1 cut(s)	141
Cfr13I	GGNCC	5 cut(s)	571, 689, 740, 977, 1105
Csp6I	GTAC	1 cut(s)	864
CviAII	CATG	4 cut(s)	104, 485, 647, 1066
CviQI	GTAC	1 cut(s)	864
DdeI	CTNAG	3 cut(s)	255, 786, 1058
DpnI	GATC	7 cut(s)	32, 169, 495, 510, 537, 849, 948
DpnII	GATC	7 cut(s)	30, 167, 493, 508, 535, 847, 946
DraI	TTTAAA	1 cut(s)	1168
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
Eco105I	TACGTA	1 cut(s)	920
Eco47I	GGWCC	3 cut(s)	571, 740, 977
Eco57I	CTGAAG	2 cut(s)	858, 1004
Eco91I	GGTNACC	1 cut(s)	172
EcoO65I	GGTNACC	1 cut(s)	172
EcoRI	GAATTC	2 cut(s)	799, 962
EcoRII	CCWGG	3 cut(s)	97, 573, 736
EcoT22I	ATGCAT	1 cut(s)	709
FaeI	CATG	4 cut(s)	107, 488, 650, 1069
FalI	AAGNNNNNCTT	2 cut(s)	302, 334
FatI	CATG	4 cut(s)	103, 484, 646, 1065
FbaI	TGATCA	1 cut(s)	946
Fnu4HI	GCNGC	1 cut(s)	819
FokI	GGATG	2 cut(s)	309, 983
Fsp4HI	GCNGC	1 cut(s)	819
FspBI	CTAG	1 cut(s)	855
GlaI	GCGC	2 cut(s)	69, 1075
GluI	GCNGC	1 cut(s)	819
GsuI	CTGGAG	1 cut(s)	9
HaeII	RGCGCY	1 cut(s)	1077
HaeIII	GGCC	4 cut(s)	102, 145, 690, 1107
HapII	CCGG	2 cut(s)	142, 506
HhaI	GCGC	2 cut(s)	70, 1076
Hin1II	CATG	4 cut(s)	107, 488, 650, 1069
Hin6I	GCGC	2 cut(s)	68, 1074
HinP1I	GCGC	2 cut(s)	68, 1074
HindIII	AAGCTT	2 cut(s)	555, 1016
HinfI	GANTC	5 cut(s)	19, 125, 189, 602, 659
HpaII	CCGG	2 cut(s)	142, 506
HphI	GGTGA	3 cut(s)	184, 289, 1080
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	5 cut(s)	258, 571, 607, 847, 1007
Hpy188III	TCNNGA	6 cut(s)	122, 491, 512, 869, 967, 1123
Hpy8I	GTNNAC	1 cut(s)	457
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	1 cut(s)	983
HpyCH4III	ACNGT	7 cut(s)	158, 283, 417, 454, 772, 1031, 1099
HpyCH4IV	ACGT	2 cut(s)	919, 1144
HpyCH4V	TGCA	7 cut(s)	10, 53, 184, 653, 707, 812, 821
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 306, 818, 824, 1082
HpyF3I	CTNAG	3 cut(s)	255, 786, 1058
HpySE526I	ACGT	2 cut(s)	919, 1144
Hsp92II	CATG	4 cut(s)	107, 488, 650, 1069
HspAI	GCGC	2 cut(s)	68, 1074
KroI	GCCGGC	1 cut(s)	141
KroNI	GCCGGC	1 cut(s)	143
Ksp22I	TGATCA	1 cut(s)	946
Kzo9I	GATC	7 cut(s)	30, 167, 493, 508, 535, 847, 946
LmnI	GCTCC	1 cut(s)	787
Lsp1109I	GCAGC	1 cut(s)	805
LweI	GCATC	8 cut(s)	171, 241, 287, 433, 716, 830, 851, 1005
MaeI	CTAG	1 cut(s)	855
MaeII	ACGT	2 cut(s)	919, 1144
MaeIII	GTNAC	4 cut(s)	172, 277, 289, 937
MalI	GATC	7 cut(s)	32, 169, 495, 510, 537, 849, 948
MboI	GATC	7 cut(s)	30, 167, 493, 508, 535, 847, 946
MboII	GAAGA	4 cut(s)	77, 416, 542, 695
MfeI	CAATTG	1 cut(s)	711
MflI	RGATCY	3 cut(s)	493, 508, 847
MhlI	GDGCHC	2 cut(s)	43, 762
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	9 cut(s)	329, 539, 711, 799, 922, 962, 971, 1046, 1173
MluNI	TGGCCA	1 cut(s)	102
MmeI	TCCRAC	1 cut(s)	875
MnlI	CCTC	8 cut(s)	33, 507, 526, 865, 883, 892, 949, 986
Mox20I	TGGCCA	1 cut(s)	102
Mph1103I	ATGCAT	1 cut(s)	709
MroNI	GCCGGC	1 cut(s)	141
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	3 cut(s)	435, 462, 1167
Msp20I	TGGCCA	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	818
MspI	CCGG	2 cut(s)	142, 506
MspR9I	CCNGG	3 cut(s)	99, 575, 738
MunI	CAATTG	1 cut(s)	711
MvaI	CCWGG	3 cut(s)	99, 575, 738
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	5 cut(s)	65, 306, 818, 824, 1082
NaeI	GCCGGC	1 cut(s)	143
NdeII	GATC	7 cut(s)	30, 167, 493, 508, 535, 847, 946
NgoMIV	GCCGGC	1 cut(s)	141
NlaIII	CATG	4 cut(s)	107, 488, 650, 1069
NlaIV	GGNNCC	2 cut(s)	495, 1106
NmuCI	GTSAC	3 cut(s)	172, 277, 937
NsiI	ATGCAT	1 cut(s)	709
PcsI	WCGNNNNNNNCGW	1 cut(s)	176
PdiI	GCCGGC	1 cut(s)	143
PfeI	GAWTC	5 cut(s)	19, 125, 189, 602, 659
PfoI	TCCNGGA	1 cut(s)	736
PkrI	GCNGC	1 cut(s)	820
Ppu21I	YACGTR	2 cut(s)	920, 1145
PsiI	TTATAA	1 cut(s)	267
Psp6I	CCWGG	3 cut(s)	97, 573, 736
PspEI	GGTNACC	1 cut(s)	172
PspGI	CCWGG	3 cut(s)	97, 573, 736
PspN4I	GGNNCC	2 cut(s)	495, 1106
PspPI	GGNCC	5 cut(s)	571, 689, 740, 977, 1105
PsuI	RGATCY	3 cut(s)	493, 508, 847
PvuII	CAGCTG	1 cut(s)	818
RsaI	GTAC	1 cut(s)	865
RsaNI	GTAC	1 cut(s)	864
SaqAI	TTAA	3 cut(s)	435, 462, 1167
SatI	GCNGC	1 cut(s)	819
Sau3AI	GATC	7 cut(s)	30, 167, 493, 508, 535, 847, 946
Sau96I	GGNCC	5 cut(s)	571, 689, 740, 977, 1105
ScaI	AGTACT	1 cut(s)	865
ScrFI	CCNGG	3 cut(s)	99, 575, 738
SduI	GDGCHC	2 cut(s)	43, 762
SfaNI	GCATC	8 cut(s)	171, 241, 287, 433, 716, 830, 851, 1005
SfcI	CTRYAG	2 cut(s)	109, 672
SinI	GGWCC	3 cut(s)	571, 740, 977
SmlI	CTYRAG	5 cut(s)	42, 522, 869, 931, 953
SmoI	CTYRAG	5 cut(s)	42, 522, 869, 931, 953
SnaBI	TACGTA	1 cut(s)	920
Sse9I	AATT	9 cut(s)	329, 539, 711, 799, 922, 962, 971, 1046, 1173
SspMI	CTAG	1 cut(s)	855
StyD4I	CCNGG	3 cut(s)	97, 573, 736
TaaI	ACNGT	7 cut(s)	158, 283, 417, 454, 772, 1031, 1099
TaiI	ACGT	2 cut(s)	922, 1147
TaqI	TCGA	2 cut(s)	153, 1122
TasI	AATT	9 cut(s)	329, 539, 711, 799, 922, 962, 971, 1046, 1173
TatI	WGTACW	1 cut(s)	863
TfiI	GAWTC	5 cut(s)	19, 125, 189, 602, 659
Tru1I	TTAA	3 cut(s)	435, 462, 1167
Tru9I	TTAA	3 cut(s)	435, 462, 1167
TscAI	CASTG	4 cut(s)	33, 43, 883, 1102
TseFI	GTSAC	3 cut(s)	172, 277, 937
TseI	GCWGC	1 cut(s)	818
Tsp45I	GTSAC	3 cut(s)	172, 277, 937
TspDTI	ATGAA	3 cut(s)	52, 77, 1082
TspRI	CASTG	4 cut(s)	33, 43, 883, 1102
VpaK11BI	GGWCC	3 cut(s)	571, 740, 977
XapI	RAATTY	5 cut(s)	329, 799, 962, 971, 1046
XcmI	CCANNNNNNNNNTGG	1 cut(s)	508
XspI	CTAG	1 cut(s)	855
ZrmI	AGTACT	1 cut(s)	865
Zsp2I	ATGCAT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.