Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013703

Physical Location & Seq

Genomic Coordinates Reverse (-)

7781477 .. 7786544

Gene Structure 5068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00085520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1947 bp

ATGGCTTTTCAGACAGCGATTCCTCCAGTGATCCCCAGTGCTCAAGTTGTTGCAAATGCTTTCATTGCGCAGTATTACCATATTCTTCATCACAACCCTGGCCATGTCTATAGATTTTATCAGGATTCAAGTGTGATGAGCCGGCCTGATTCCGACGGTGTGATGAGATCGGTGACCACGATGCAAGGAATCAATGAGAAGATCCTTTCCTTTGATTACAAGGAATATAAGGCTGAGATAGAAACTGCAGATGCTCAGAACTCTTATAAAGATGGGGTGACTGTGTATGTAGAAGATGGAGAACTGTTGAAAAACCATTCAGTTAATAATGATGCCACAACAGTCCACTTGAACCAAGAACCAGAACCAACTCATGTTCTGGATCCTCCCGCACCGGATCTGGAAACTATTCAAGTTGAAGAGGATCAAATTGTTATTGAGAAAGCTTTTGACACATCGGACCAGGATAGACAATCAGCTAATGAGAGAGAATCTGATACCGAATGCCCATCTTATTCAAATGGGAATGATGTCCATGTTGCAGTTGAATCAACTTCTACTCCAGCCCAAGAAGATGGCCCAAAGAAGTCTTATGCATCAATTGTAAAAGTAGCCAAAGGAAGTCCAGGACCAAATAAAGTTTATGTGCCCACTAACACCGTAAAAGTTGCTCCTAAGAAAACAGAGAATTCTTTGCCTGTGCCAGCTGCATCTGCTTCCGTGCCTGAAGCATCAGCTCCAACTAGCACCAGTACCCTCGAGGGCAGTGAGACTAATGAGGAAGTTGAGGGCTATTCTATATACATACGTAATTTGCCGTTGAGTGTGACGGCTGATCAGCTTGAGGTTGAATTCAAGAAATTTGGACCAATAAAGGAAGGAGGCATCCAAGTTCGAAATAAGAAGCTTCAGGGATACTGTTTTGGATTTGTTGAATTTCTGTCTCTAAGTTCCATGAATAGCGCCATTCAGGCTTCACCAATCACTGTTGGGGGCCGTCAAGCTATCATCGAGATAAAGAGAACTAACACACGTAGGCTGAATTCTCAGGTCGAGGCAGGGGTCGAGCTGGGCGTGGCGGAGAAGGTTATCGACCAGGGAGAGGAGATGGTCATCAACAAGGTAGAGGAGAGGGTTATCAACAAGGGAGAGGAGACGGTTATCACCAAGGTAGAGGAGACGGTCATCAACAAGGGAGAGGAGACGGTTATCAACATGGGAGAGGAGAAGTTTATCAACAAAGGAGAGGAGACGGTTATCATCAAGGGAGAGGAGACGGTTATCAGCAAGGGAGAGGAAGAGGTGGCCGTCCAAGTGGACCAAAGCATAATGCGGTTTTATCATGAATTAGAAGAGGAGGCATTTGCTTTAGCCGTACTATCACAACAGCACCCTGTGTTGAAAGCACTCCACTCAAATGGGGCCTATGAGCTACTGAATGGTGTCAAATCCACTCGTAGTTGGGTGAATGGGTATTTAAGCTTCTTCCCTATTCTTCTCTGCCCGTCTCTGGCTCATGTGACATTCTCTGTAGTTAGTCTAACAATGGCCAAGTGCAAGTCACCAGCCAGATCGGCAACCCAGGAGCAAGTAAGGAAACCTAAACTGGCCGGAAAAGTCAAGAAGCAGAAGATTGGCCCGAAACTGATCGAGGGTCGATCGTTAACGCTTTTAAAAAAGGGAGAGGAGCTTGCTACCCTCTGCAATGCCCAGGTCGCTGTGCTTATTTATGGCATCAACGGCGGTGTGCAGACCTGGCCAAACAACTCGAACACCGTCAAAGACATTTTATTACAGTACAAGCACGCGGCCGGTAAGAAAATATCTGAGAGATCATTCAAATCTATGAAACATAAAGTGGCTGATACTACTGGAGAAGGGCTTAATCAAAACCCTTGTTTTGAAGGGCTTGATGATCACACGGGTTATAAGTTGCGGGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

648

Amino Acids

71.2

Weight (kDa)

5.38

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTF2	PF02136	17 - 98	1.7e-15	Nuclear transport factor 2 (NTF2) domain
RRM_1	PF00076	267 - 332	3.3e-10	RNA recognition motif
SRF-TF	PF00319	553 - 586	4.8e-07	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46800 FvH4_6g46800
malus_domestica	MD09G1067300.v1.1 MD17G1060400.v1.1
prunus_persica	Prupe.3G254500_v2.0.a1
pyrus_communis	pycom17g06010
rosa_chinensis	RchiOBHm_Chr2g0165791
rosa_laevigata	RLG00000021554
rosa_multiflora	Rmu_sc0003227.1_g000012
rosa_roxburghii	Rroxscaffold_2G00085520
rosa_rugosa	Rorug02G0517400 Rorug02G0517500 Rorug02G0517600
rosa_samantha	Rh2AG583100 Rh2BG595200 Rh2CG565800 Rh2DG605000
rosa_wichuraiana	Rw2G048640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	267, 1929
AbsI	CCTCGAGG	1 cut(s)	758
Acc16I	TGCGCA	1 cut(s)	69
AccII	CGCG	1 cut(s)	1808
AciI	CCGC	6 cut(s)	390, 1079, 1333, 1743, 1808, 1936
AclWI	GGATC	6 cut(s)	25, 196, 377, 390, 405, 432
AcoI	YGGCCR	6 cut(s)	100, 1305, 1548, 1608, 1757, 1809
AcsI	RAATTY	5 cut(s)	688, 851, 860, 935, 1042
AcuI	CTGAAG	2 cut(s)	747, 893
AdeI	CACNNNGTG	1 cut(s)	1396
AfaI	GTAC	3 cut(s)	754, 1377, 1799
AfiI	CCNNNNNNNGG	2 cut(s)	1102, 1510
AflIII	ACRYGT	1 cut(s)	1031
AjnI	CCWGG	7 cut(s)	97, 462, 625, 1095, 1581, 1710, 1754
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	8 cut(s)	764, 948, 1148, 1172, 1196, 1244, 1268, 1512
AlwI	GGATC	6 cut(s)	25, 196, 377, 390, 405, 432
Ama87I	CYCGRG	1 cut(s)	758
ApeKI	GCWGC	1 cut(s)	707
ApoI	RAATTY	5 cut(s)	688, 851, 860, 935, 1042
Asp700I	GAANNNNTTC	1 cut(s)	408
AspLEI	GCGC	2 cut(s)	70, 965
AspS9I	GGNCC	8 cut(s)	460, 578, 629, 866, 994, 1318, 1422, 1637
AsuHPI	GGTGA	6 cut(s)	184, 289, 969, 1156, 1477, 1554
AsuII	TTCGAA	1 cut(s)	895
AvaI	CYCGRG	1 cut(s)	758
AvaII	GGWCC	4 cut(s)	460, 629, 866, 1318
BaeGI	GKGCMC	1 cut(s)	651
BalI	TGGCCA	3 cut(s)	102, 1550, 1759
BamHI	GGATCC	1 cut(s)	382
BarI	GAAGNNNNNNTAC	2 cut(s)	1466, 1498
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	694
BccI	CCATC	5 cut(s)	266, 290, 517, 569, 1102
BceAI	ACGGC	6 cut(s)	802, 846, 981, 1292, 1358, 1756
BciT130I	CCWGG	7 cut(s)	99, 464, 627, 1097, 1583, 1712, 1756
BciVI	GTATCC	1 cut(s)	908
BclI	TGATCA	2 cut(s)	835, 1915
BcoDI	GTCTC	8 cut(s)	764, 948, 1148, 1172, 1196, 1244, 1268, 1512
BfaI	CTAG	1 cut(s)	744
BfmI	CTRYAG	3 cut(s)	109, 246, 1530
BfoI	RGCGCY	1 cut(s)	966
BfuI	GTATCC	1 cut(s)	908
BglI	GCCNNNNNGGC	2 cut(s)	971, 1574
BisI	GCNGC	2 cut(s)	708, 1809
BlsI	GCNGC	2 cut(s)	709, 1810
Bme1390I	CCNGG	7 cut(s)	99, 464, 627, 1097, 1583, 1712, 1756
Bme18I	GGWCC	4 cut(s)	460, 629, 866, 1318
BmeT110I	CYCGRG	1 cut(s)	758
BmgT120I	GGNCC	8 cut(s)	460, 578, 629, 866, 994, 1318, 1422, 1637
BmiI	GGNNCC	3 cut(s)	384, 995, 1423
BmrFI	CCNGG	7 cut(s)	99, 464, 627, 1097, 1583, 1712, 1756
BmrI	ACTGGG	1 cut(s)	30
BmsI	GCATC	8 cut(s)	171, 241, 322, 605, 719, 740, 894, 1743
BmuI	ACTGGG	1 cut(s)	30
BpmI	CTGGAG	3 cut(s)	9, 546, 1893
Bpu14I	TTCGAA	1 cut(s)	895
BpuEI	CTTGAG	2 cut(s)	27, 863
BsaAI	YACGTR	2 cut(s)	809, 1034
BsaBI	GATNNNNATC	1 cut(s)	1112
BsaJI	CCNNGG	5 cut(s)	97, 1096, 1167, 1581, 1710
BsaWI	WCCGGW	1 cut(s)	394
BsaXI	ACNNNNNCTCC	2 cut(s)	544, 574
Bsc4I	CCNNNNNNNGG	2 cut(s)	1102, 1510
Bse118I	RCCGGY	2 cut(s)	141, 1811
Bse1I	ACTGG	5 cut(s)	26, 36, 750, 1611, 1876
Bse3DI	GCAATG	2 cut(s)	63, 1711
Bse8I	GATNNNNATC	1 cut(s)	1112
BseBI	CCWGG	7 cut(s)	99, 464, 627, 1097, 1583, 1712, 1756
BseDI	CCNNGG	5 cut(s)	97, 1096, 1167, 1581, 1710
BseGI	GGATG	2 cut(s)	885, 1945
BseJI	GATNNNNATC	1 cut(s)	1112
BseLI	CCNNNNNNNGG	2 cut(s)	1102, 1510
BseMI	GCAATG	2 cut(s)	63, 1711
BseMII	CTCAG	4 cut(s)	225, 269, 1061, 1818
BseNI	ACTGG	5 cut(s)	26, 36, 750, 1611, 1876
BseSI	GKGCMC	1 cut(s)	651
BseX3I	CGGCCG	1 cut(s)	1809
BseXI	GCAGC	1 cut(s)	694
BseYI	CCCAGC	1 cut(s)	1069
BsgI	GTGCAG	1 cut(s)	1769
Bsh1236I	CGCG	1 cut(s)	1808
Bsh1285I	CGRYCG	2 cut(s)	1661, 1812
BsiEI	CGRYCG	2 cut(s)	1661, 1812
BsiHKAI	GWGCWC	1 cut(s)	43
BsiHKCI	CYCGRG	1 cut(s)	758
BsiSI	CCGG	4 cut(s)	142, 395, 1611, 1812
BslI	CCNNNNNNNGG	2 cut(s)	1102, 1510
BsmAI	GTCTC	8 cut(s)	764, 948, 1148, 1172, 1196, 1244, 1268, 1512
BsmBI	CGTCTC	6 cut(s)	1148, 1172, 1196, 1244, 1268, 1512
BsmI	GAATGC	1 cut(s)	509
BsoBI	CYCGRG	1 cut(s)	758
Bsp119I	TTCGAA	1 cut(s)	895
Bsp1286I	GDGCHC	2 cut(s)	43, 651
BspACI	CCGC	6 cut(s)	390, 1079, 1333, 1743, 1808, 1936
BspCNI	CTCAG	4 cut(s)	226, 268, 1060, 1819
BspFNI	CGCG	1 cut(s)	1808
BspHI	TCATGA	1 cut(s)	1342
BspLI	GGNNCC	3 cut(s)	384, 995, 1423
BspMAI	CTGCAG	1 cut(s)	250
BspPI	GGATC	6 cut(s)	25, 196, 377, 390, 405, 432
BspT104I	TTCGAA	1 cut(s)	895
BsrDI	GCAATG	2 cut(s)	63, 1711
BsrFI	RCCGGY	2 cut(s)	141, 1811
BsrI	ACTGG	5 cut(s)	26, 36, 750, 1611, 1876
BssAI	RCCGGY	2 cut(s)	141, 1811
BssECI	CCNNGG	5 cut(s)	97, 1096, 1167, 1581, 1710
BssT1I	CCWWGG	1 cut(s)	1167
Bst2UI	CCWGG	7 cut(s)	99, 464, 627, 1097, 1583, 1712, 1756
Bst6I	CTCTTC	3 cut(s)	414, 1293, 1347
BstBAI	YACGTR	2 cut(s)	809, 1034
BstBI	TTCGAA	1 cut(s)	895
BstC8I	GCNNGC	4 cut(s)	143, 705, 1692, 1806
BstDEI	CTNAG	6 cut(s)	234, 255, 675, 947, 1047, 1827
BstEII	GGTNACC	1 cut(s)	172
BstF5I	GGATG	2 cut(s)	885, 1945
BstFNI	CGCG	1 cut(s)	1808
BstH2I	RGCGCY	1 cut(s)	966
BstHHI	GCGC	2 cut(s)	70, 965
BstMAI	GTCTC	8 cut(s)	764, 948, 1148, 1172, 1196, 1244, 1268, 1512
BstMCI	CGRYCG	2 cut(s)	1661, 1812
BstMWI	GCNNNNNNNGC	7 cut(s)	65, 713, 971, 1574, 1715, 1740, 1756
BstNI	CCWGG	7 cut(s)	99, 464, 627, 1097, 1583, 1712, 1756
BstPI	GGTNACC	1 cut(s)	172
BstSCI	CCNGG	7 cut(s)	97, 462, 625, 1095, 1581, 1710, 1754
BstSFI	CTRYAG	3 cut(s)	109, 246, 1530
BstSLI	GKGCMC	1 cut(s)	651
BstSNI	TACGTA	1 cut(s)	809
BstUI	CGCG	1 cut(s)	1808
BstV1I	GCAGC	1 cut(s)	694
BstX2I	RGATCY	3 cut(s)	201, 382, 397
BstXI	CCANNNNNNTGG	2 cut(s)	575, 1418
BstYI	RGATCY	3 cut(s)	201, 382, 397
BstZI	CGGCCG	1 cut(s)	1809
BsuI	GTATCC	1 cut(s)	908
BtsCI	GGATG	2 cut(s)	885, 1945
BtsI	GCAGTG	1 cut(s)	772
BtsIMutI	CAGTG	4 cut(s)	33, 43, 772, 984
Cac8I	GCNNGC	4 cut(s)	143, 705, 1692, 1806
CciI	TCATGA	1 cut(s)	1342
CfoI	GCGC	2 cut(s)	70, 965
Cfr10I	RCCGGY	2 cut(s)	141, 1811
Cfr13I	GGNCC	8 cut(s)	460, 578, 629, 866, 994, 1318, 1422, 1637
Csp6I	GTAC	3 cut(s)	753, 1376, 1798
CviAII	CATG	7 cut(s)	104, 374, 536, 955, 1216, 1343, 1517
CviQI	GTAC	3 cut(s)	753, 1376, 1798
DdeI	CTNAG	6 cut(s)	234, 255, 675, 947, 1047, 1827
DraI	TTTAAA	1 cut(s)	1674
DraIII	CACNNNGTG	1 cut(s)	1396
EaeI	YGGCCR	6 cut(s)	100, 1305, 1548, 1608, 1757, 1809
EagI	CGGCCG	1 cut(s)	1809
Eam1104I	CTCTTC	3 cut(s)	414, 1293, 1347
EarI	CTCTTC	3 cut(s)	414, 1293, 1347
EciI	GGCGGA	1 cut(s)	1094
EclXI	CGGCCG	1 cut(s)	1809
Eco105I	TACGTA	1 cut(s)	809
Eco130I	CCWWGG	1 cut(s)	1167
Eco47I	GGWCC	4 cut(s)	460, 629, 866, 1318
Eco52I	CGGCCG	1 cut(s)	1809
Eco57I	CTGAAG	2 cut(s)	747, 893
Eco88I	CYCGRG	1 cut(s)	758
Eco91I	GGTNACC	1 cut(s)	172
EcoO109I	RGGNCCY	1 cut(s)	1422
EcoO65I	GGTNACC	1 cut(s)	172
EcoRI	GAATTC	3 cut(s)	688, 851, 1042
EcoRII	CCWGG	7 cut(s)	97, 462, 625, 1095, 1581, 1710, 1754
EcoT14I	CCWWGG	1 cut(s)	1167
EcoT22I	ATGCAT	1 cut(s)	598
ErhI	CCWWGG	1 cut(s)	1167
Esp3I	CGTCTC	6 cut(s)	1148, 1172, 1196, 1244, 1268, 1512
FaeI	CATG	7 cut(s)	107, 377, 539, 958, 1219, 1346, 1520
FatI	CATG	7 cut(s)	103, 373, 535, 954, 1215, 1342, 1516
FauI	CCCGC	2 cut(s)	397, 1929
FbaI	TGATCA	2 cut(s)	835, 1915
Fnu4HI	GCNGC	2 cut(s)	708, 1809
FokI	GGATG	1 cut(s)	872
Fsp4HI	GCNGC	2 cut(s)	708, 1809
FspBI	CTAG	1 cut(s)	744
FspI	TGCGCA	1 cut(s)	69
GlaI	GCGC	2 cut(s)	69, 964
GluI	GCNGC	2 cut(s)	708, 1809
GsaI	CCCAGC	1 cut(s)	1073
GsuI	CTGGAG	3 cut(s)	9, 546, 1893
HaeII	RGCGCY	1 cut(s)	966
HapII	CCGG	4 cut(s)	142, 395, 1611, 1812
HhaI	GCGC	2 cut(s)	70, 965
Hin1II	CATG	7 cut(s)	107, 377, 539, 958, 1219, 1346, 1520
Hin6I	GCGC	2 cut(s)	68, 963
HinP1I	GCGC	2 cut(s)	68, 963
HincII	GTYRAC	1 cut(s)	1665
HindII	GTYRAC	1 cut(s)	1665
HindIII	AAGCTT	3 cut(s)	444, 905, 1480
HinfI	GANTC	6 cut(s)	19, 125, 149, 189, 491, 548
HpaI	GTTAAC	1 cut(s)	1665
HpaII	CCGG	4 cut(s)	142, 395, 1611, 1812
HphI	GGTGA	6 cut(s)	184, 289, 969, 1156, 1477, 1554
Hpy166II	GTNNAC	3 cut(s)	346, 1318, 1665
Hpy188I	TCNGA	6 cut(s)	12, 154, 258, 460, 496, 1828
Hpy188III	TCNNGA	7 cut(s)	122, 380, 401, 856, 1012, 1343, 1621
Hpy8I	GTNNAC	3 cut(s)	346, 1318, 1665
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	4 cut(s)	872, 1078, 1871, 1898
HpyCH4IV	ACGT	2 cut(s)	808, 1033
HpyCH4V	TGCA	9 cut(s)	53, 184, 248, 542, 596, 710, 1557, 1704, 1750
HpyF10VI	GCNNNNNNNGC	7 cut(s)	65, 713, 971, 1574, 1715, 1740, 1756
HpyF3I	CTNAG	6 cut(s)	234, 255, 675, 947, 1047, 1827
HpySE526I	ACGT	2 cut(s)	808, 1033
Hsp92II	CATG	7 cut(s)	107, 377, 539, 958, 1219, 1346, 1520
HspAI	GCGC	2 cut(s)	68, 963
KroI	GCCGGC	1 cut(s)	141
KroNI	GCCGGC	1 cut(s)	143
Ksp22I	TGATCA	2 cut(s)	835, 1915
KspAI	GTTAAC	1 cut(s)	1665
LmnI	GCTCC	4 cut(s)	676, 742, 1585, 1687
Lsp1109I	GCAGC	1 cut(s)	694
LweI	GCATC	8 cut(s)	171, 241, 322, 605, 719, 740, 894, 1743
MaeI	CTAG	1 cut(s)	744
MaeII	ACGT	2 cut(s)	808, 1033
MaeIII	GTNAC	5 cut(s)	172, 277, 826, 1519, 1560
MfeI	CAATTG	1 cut(s)	600
MflI	RGATCY	3 cut(s)	201, 382, 397
MhlI	GDGCHC	2 cut(s)	43, 651
MlsI	TGGCCA	3 cut(s)	102, 1550, 1759
MluCI	AATT	9 cut(s)	429, 600, 688, 811, 851, 860, 935, 1042, 1346
MluNI	TGGCCA	3 cut(s)	102, 1550, 1759
MmeI	TCCRAC	2 cut(s)	177, 764
Mox20I	TGGCCA	3 cut(s)	102, 1550, 1759
Mph1103I	ATGCAT	1 cut(s)	598
MroNI	GCCGGC	1 cut(s)	141
MroXI	GAANNNNTTC	1 cut(s)	408
MscI	TGGCCA	3 cut(s)	102, 1550, 1759
MseI	TTAA	5 cut(s)	324, 1478, 1664, 1673, 1884
MslI	CAYNNNNRTG	1 cut(s)	1416
Msp20I	TGGCCA	3 cut(s)	102, 1550, 1759
MspA1I	CMGCKG	1 cut(s)	707
MspI	CCGG	4 cut(s)	142, 395, 1611, 1812
MspR9I	CCNGG	7 cut(s)	99, 464, 627, 1097, 1583, 1712, 1756
MunI	CAATTG	1 cut(s)	600
Mva1269I	GAATGC	1 cut(s)	509
MvaI	CCWGG	7 cut(s)	99, 464, 627, 1097, 1583, 1712, 1756
MvnI	CGCG	1 cut(s)	1808
MwoI	GCNNNNNNNGC	7 cut(s)	65, 713, 971, 1574, 1715, 1740, 1756
NaeI	GCCGGC	1 cut(s)	143
NgoMIV	GCCGGC	1 cut(s)	141
NlaIII	CATG	7 cut(s)	107, 377, 539, 958, 1219, 1346, 1520
NlaIV	GGNNCC	3 cut(s)	384, 995, 1423
NmuCI	GTSAC	5 cut(s)	172, 277, 826, 1519, 1560
NsbI	TGCGCA	1 cut(s)	69
NsiI	ATGCAT	1 cut(s)	598
NspV	TTCGAA	1 cut(s)	895
PaeR7I	CTCGAG	1 cut(s)	758
PagI	TCATGA	1 cut(s)	1342
PcsI	WCGNNNNNNNCGW	2 cut(s)	176, 1071
PctI	GAATGC	1 cut(s)	509
PdiI	GCCGGC	1 cut(s)	143
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	6 cut(s)	19, 125, 149, 189, 491, 548
PfoI	TCCNGGA	1 cut(s)	625
PkrI	GCNGC	2 cut(s)	709, 1810
Ple19I	CGATCG	1 cut(s)	1661
Ppu21I	YACGTR	2 cut(s)	809, 1034
PsiI	TTATAA	2 cut(s)	267, 1929
Psp6I	CCWGG	7 cut(s)	97, 462, 625, 1095, 1581, 1710, 1754
PspEI	GGTNACC	1 cut(s)	172
PspFI	CCCAGC	1 cut(s)	1069
PspGI	CCWGG	7 cut(s)	97, 462, 625, 1095, 1581, 1710, 1754
PspN4I	GGNNCC	3 cut(s)	384, 995, 1423
PspPI	GGNCC	8 cut(s)	460, 578, 629, 866, 994, 1318, 1422, 1637
PspXI	VCTCGAGB	1 cut(s)	758
PstI	CTGCAG	1 cut(s)	250
PsuI	RGATCY	3 cut(s)	201, 382, 397
PvuI	CGATCG	1 cut(s)	1661
PvuII	CAGCTG	1 cut(s)	707
RsaI	GTAC	3 cut(s)	754, 1377, 1799
RsaNI	GTAC	3 cut(s)	753, 1376, 1798
RseI	CAYNNNNRTG	1 cut(s)	1416
SaqAI	TTAA	5 cut(s)	324, 1478, 1664, 1673, 1884
SatI	GCNGC	2 cut(s)	708, 1809
Sau96I	GGNCC	8 cut(s)	460, 578, 629, 866, 994, 1318, 1422, 1637
ScrFI	CCNGG	7 cut(s)	99, 464, 627, 1097, 1583, 1712, 1756
SduI	GDGCHC	2 cut(s)	43, 651
SfaNI	GCATC	8 cut(s)	171, 241, 322, 605, 719, 740, 894, 1743
SfcI	CTRYAG	3 cut(s)	109, 246, 1530
Sfr274I	CTCGAG	1 cut(s)	758
SfuI	TTCGAA	1 cut(s)	895
SinI	GGWCC	4 cut(s)	460, 629, 866, 1318
SlaI	CTCGAG	1 cut(s)	758
SmiMI	CAYNNNNRTG	1 cut(s)	1416
SmlI	CTYRAG	3 cut(s)	42, 758, 842
SmoI	CTYRAG	3 cut(s)	42, 758, 842
SnaBI	TACGTA	1 cut(s)	809
Sse9I	AATT	9 cut(s)	429, 600, 688, 811, 851, 860, 935, 1042, 1346
SsiI	CCGC	6 cut(s)	390, 1079, 1333, 1743, 1808, 1936
SspMI	CTAG	1 cut(s)	744
StyD4I	CCNGG	7 cut(s)	97, 462, 625, 1095, 1581, 1710, 1754
StyI	CCWWGG	1 cut(s)	1167
TaiI	ACGT	2 cut(s)	811, 1036
TaqI	TCGA	9 cut(s)	759, 895, 1011, 1053, 1065, 1092, 1650, 1657, 1769
TasI	AATT	9 cut(s)	429, 600, 688, 811, 851, 860, 935, 1042, 1346
TatI	WGTACW	1 cut(s)	1797
TauI	GCSGC	1 cut(s)	1811
TfiI	GAWTC	6 cut(s)	19, 125, 149, 189, 491, 548
Tru1I	TTAA	5 cut(s)	324, 1478, 1664, 1673, 1884
Tru9I	TTAA	5 cut(s)	324, 1478, 1664, 1673, 1884
TscAI	CASTG	4 cut(s)	33, 43, 772, 991
TseFI	GTSAC	5 cut(s)	172, 277, 826, 1519, 1560
TseI	GCWGC	1 cut(s)	707
Tsp45I	GTSAC	5 cut(s)	172, 277, 826, 1519, 1560
TspDTI	ATGAA	5 cut(s)	52, 77, 971, 1359, 1862
TspGWI	ACGGA	1 cut(s)	709
TspRI	CASTG	4 cut(s)	33, 43, 772, 991
VpaK11BI	GGWCC	4 cut(s)	460, 629, 866, 1318
XapI	RAATTY	5 cut(s)	688, 851, 860, 935, 1042
XhoI	CTCGAG	1 cut(s)	758
XmnI	GAANNNNTTC	1 cut(s)	408
XspI	CTAG	1 cut(s)	744
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.