MD17G1065300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0010379
Physical Location & Seq
Forward (+)
5268030 .. 5269194
1165 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1065300.v1.1.491

Sequence Viewer

Length: 342 bp
ATGGATAACATAACGGCGAGCGAGCTGGCCGGATTCGGAGTCGGAACTCTGCTCCTCTGCGCCACCATTGCCGCCCCAAAGATCGACGCTTTCATCTCCGCCTCTCAGCGCAGTTCCTTGGGAATGTGCAAGAGATGTGGCAACTTGAGGATGATAGCATGCTCAAGATGTAGAGGAGTTGGATTGATCAAAGAAGGTGAAATGCTTGGATCAAATCTCATCGACGACATGTATGAATCGCTTGGGGGTGAAGGATCGAAAGTAAGATCCATCTCTTGCACCTATTGTCAAGCTAGAGGTCATTTTTCGTGCCCCGATTGCTCTAAACCAACGTCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

11.89

Weight (kDa)

8.1

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010379)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15802
fragaria_vesca FvH4_6g46430 FvH4_6g46430 FvH4_6g46430 FvH4_6g46430 FvH4_6g46430
malus_domestica MD09G1073800.v1.1 MD17G1065300.v1.1
prunus_persica Prupe.3G249500_v2.0.a1
pyrus_communis pycom09g00100 pycom17g06520
rosa_chinensis RchiOBHm_Chr2g0164961
rosa_laevigata RLG00000021502
rosa_multiflora Rmu_sc0001097.1_g000012
rosa_roxburghii Rroxscaffold_2G00086150
rosa_rugosa Rorug02G0511700 Rorug02G0511800
rosa_samantha Rh2AG580000 Rh2BG591100 Rh2DG601400
rosa_wichuraiana Rw2G048140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 72, 99
AclWI GGATC 3 cut(s) 217, 261, 262
AcoI YGGCCR 1 cut(s) 27
AflIII ACRYGT 1 cut(s) 228
AluBI AGCT 2 cut(s) 25, 293
AluI AGCT 2 cut(s) 25, 293
AlwI GGATC 3 cut(s) 217, 261, 262
AoxI GGCC 1 cut(s) 27
AspLEI GCGC 2 cut(s) 62, 111
AsuHPI GGTGA 2 cut(s) 209, 260
BaeGI GKGCMC 1 cut(s) 314
BccI CCATC 1 cut(s) 278
BceAI ACGGC 1 cut(s) 30
BclI TGATCA 1 cut(s) 186
BfaI CTAG 1 cut(s) 294
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
BpuEI CTTGAG 2 cut(s) 148, 166
BsaJI CCNNGG 1 cut(s) 117
Bse3DI GCAATG 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 1 cut(s) 156
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 119
BseRI GAGGAG 2 cut(s) 44, 189
BseSI GKGCMC 1 cut(s) 314
BshFI GGCC 1 cut(s) 29
BsiSI CCGG 1 cut(s) 30
BsnI GGCC 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 314
Bsp143I GATC 5 cut(s) 81, 186, 209, 254, 266
BspACI CCGC 2 cut(s) 72, 99
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 1 cut(s) 118
BspPI GGATC 3 cut(s) 217, 261, 262
BsrDI GCAATG 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 5 cut(s) 81, 186, 209, 254, 266
BssT1I CCWWGG 1 cut(s) 117
BstC8I GCNNGC 4 cut(s) 19, 23, 27, 160
BstDEI CTNAG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 156
BstHHI GCGC 2 cut(s) 62, 111
BstKTI GATC 5 cut(s) 84, 189, 212, 257, 269
BstMBI GATC 5 cut(s) 81, 186, 209, 254, 266
BstMWI GCNNNNNNNGC 2 cut(s) 68, 318
BstNSI RCATGY 2 cut(s) 162, 232
BstSLI GKGCMC 1 cut(s) 314
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
BsuRI GGCC 1 cut(s) 29
BtsCI GGATG 1 cut(s) 156
Cac8I GCNNGC 4 cut(s) 19, 23, 27, 160
CfoI GCGC 2 cut(s) 62, 111
CseI GACGC 1 cut(s) 95
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 2 cut(s) 159, 229
CviJI RGCY 3 cut(s) 25, 29, 293
CviKI_1 RGCY 3 cut(s) 25, 29, 293
DdeI CTNAG 1 cut(s) 105
DpnI GATC 5 cut(s) 83, 188, 211, 256, 268
DpnII GATC 5 cut(s) 81, 186, 209, 254, 266
EaeI YGGCCR 1 cut(s) 27
EciI GGCGGA 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 2 cut(s) 162, 232
FaiI YATR 4 cut(s) 11, 160, 230, 234
FatI CATG 2 cut(s) 158, 228
FbaI TGATCA 1 cut(s) 186
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 1 cut(s) 294
GlaI GCGC 2 cut(s) 61, 110
GluI GCNGC 1 cut(s) 72
HaeIII GGCC 1 cut(s) 29
HapII CCGG 1 cut(s) 30
HgaI GACGC 1 cut(s) 95
HhaI GCGC 2 cut(s) 62, 111
Hin1II CATG 2 cut(s) 162, 232
Hin6I GCGC 2 cut(s) 60, 109
HinP1I GCGC 2 cut(s) 60, 109
HinfI GANTC 3 cut(s) 33, 39, 236
HpaII CCGG 1 cut(s) 30
HphI GGTGA 2 cut(s) 209, 260
Hpy188I TCNGA 2 cut(s) 38, 44
Hpy188III TCNNGA 1 cut(s) 165
Hpy99I CGWCG 2 cut(s) 89, 227
HpyAV CCTTC 2 cut(s) 188, 245
HpyCH4IV ACGT 1 cut(s) 332
HpyCH4V TGCA 2 cut(s) 129, 279
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 318
HpyF3I CTNAG 1 cut(s) 105
HpySE526I ACGT 1 cut(s) 332
Hsp92II CATG 2 cut(s) 162, 232
HspAI GCGC 2 cut(s) 60, 109
Ksp22I TGATCA 1 cut(s) 186
Kzo9I GATC 5 cut(s) 81, 186, 209, 254, 266
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 2 cut(s) 11, 43
MaeI CTAG 1 cut(s) 294
MaeII ACGT 1 cut(s) 332
MalI GATC 5 cut(s) 83, 188, 211, 256, 268
MboI GATC 5 cut(s) 81, 186, 209, 254, 266
MflI RGATCY 1 cut(s) 266
MhlI GDGCHC 1 cut(s) 314
MlyI GAGTC 1 cut(s) 48
MmeI TCCRAC 2 cut(s) 22, 160
MnlI CCTC 5 cut(s) 65, 112, 141, 167, 290
MspI CCGG 1 cut(s) 30
MwoI GCNNNNNNNGC 2 cut(s) 68, 318
NdeII GATC 5 cut(s) 81, 186, 209, 254, 266
NlaIII CATG 2 cut(s) 162, 232
NspI RCATGY 2 cut(s) 162, 232
PaeI GCATGC 1 cut(s) 162
PciI ACATGT 1 cut(s) 228
PfeI GAWTC 2 cut(s) 33, 236
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PscI ACATGT 1 cut(s) 228
PsuI RGATCY 1 cut(s) 266
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 5 cut(s) 81, 186, 209, 254, 266
SchI GAGTC 1 cut(s) 48
SduI GDGCHC 1 cut(s) 314
SetI ASST 6 cut(s) 27, 199, 284, 295, 301, 335
SmlI CTYRAG 2 cut(s) 145, 163
SmoI CTYRAG 2 cut(s) 145, 163
SphI GCATGC 1 cut(s) 162
SsiI CCGC 2 cut(s) 72, 99
SspMI CTAG 1 cut(s) 294
StyI CCWWGG 1 cut(s) 117
TaiI ACGT 1 cut(s) 335
TaqI TCGA 3 cut(s) 84, 222, 257
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 2 cut(s) 33, 236
TspDTI ATGAA 2 cut(s) 82, 249
XceI RCATGY 2 cut(s) 162, 232
XspI CTAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.