Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0010379

Physical Location & Seq

Genomic Coordinates Forward (+)

66582 .. 67502

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g00100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCCCATGCAGGTCTCGAACCTCTAATAGGCCATTGTTGTCCAATAGCTCCAAATTATATATTATGTTGGAAACTTAAGTTTCGGATAAGGAGCTTTTTCACTGATCACTTATCAGCATGTTCTGGTCGACCGGAGAGGAAAGCAGAGAGACAGAGAGCAAAGCAAATGGATAACATAACGGCGAGCGAGCTGGCTGGATTTGGTGTCGGAACTCTGCTCCTCTGCGCCACCATTGCCGCCCCGAAGATCGACGCTTTCATCTCCGCCTCTCAGCGCAGTTCTTTGGGAATGTGCAAGAGATGTGGCAATCTGAGGTTGATAGCTTGCTCAAGATGCAAAGGAATTGGATTGATCAAAGAAGGTCAAATGCTCGGATCAAATCTCATCGACGACATGTATGAATCGCTTGGTGGTGAAGGATCGAAAGTAAGATCCATCTCTTGCACCAATTGTCAAGCTAGAGGTCATTTTTCGTGCCCCGATTGCTCTAAACCAACATCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

18.25

Weight (kDa)

9.04

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15802
fragaria_vesca	FvH4_6g46430 FvH4_6g46430 FvH4_6g46430 FvH4_6g46430 FvH4_6g46430
malus_domestica	MD09G1073800.v1.1 MD17G1065300.v1.1
prunus_persica	Prupe.3G249500_v2.0.a1
pyrus_communis	pycom09g00100 pycom17g06520
rosa_chinensis	RchiOBHm_Chr2g0164961
rosa_laevigata	RLG00000021502
rosa_multiflora	Rmu_sc0001097.1_g000012
rosa_roxburghii	Rroxscaffold_2G00086150
rosa_rugosa	Rorug02G0511700 Rorug02G0511800
rosa_samantha	Rh2AG580000 Rh2BG591100 Rh2DG601400
rosa_wichuraiana	Rw2G048140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2
AccI	GTMKAC	1 cut(s)	130
AciI	CCGC	2 cut(s)	240, 267
AclWI	GGATC	3 cut(s)	385, 429, 430
AfiI	CCNNNNNNNGG	1 cut(s)	29
AflII	CTTAAG	1 cut(s)	77
AflIII	ACRYGT	1 cut(s)	396
AluBI	AGCT	5 cut(s)	50, 96, 193, 326, 461
AluI	AGCT	5 cut(s)	50, 96, 193, 326, 461
Alw26I	GTCTC	2 cut(s)	20, 145
AlwI	GGATC	3 cut(s)	385, 429, 430
AoxI	GGCC	2 cut(s)	3, 31
AspLEI	GCGC	2 cut(s)	230, 279
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	428
BaeGI	GKGCMC	1 cut(s)	482
BccI	CCATC	1 cut(s)	446
BceAI	ACGGC	1 cut(s)	198
BclI	TGATCA	2 cut(s)	106, 354
BcoDI	GTCTC	2 cut(s)	20, 145
BfaI	CTAG	1 cut(s)	462
BfrI	CTTAAG	1 cut(s)	77
BfuAI	ACCTGC	1 cut(s)	2
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	4
BmsI	GCATC	1 cut(s)	326
BpuEI	CTTGAG	1 cut(s)	316
BsaI	GGTCTC	1 cut(s)	20
BsaWI	WCCGGW	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse3DI	GCAATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	2 cut(s)	287, 305
BseRI	GAGGAG	1 cut(s)	212
BseSI	GKGCMC	1 cut(s)	482
Bsh1285I	CGRYCG	1 cut(s)	134
BshFI	GGCC	2 cut(s)	5, 33
BsiEI	CGRYCG	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	2 cut(s)	20, 145
BsnI	GGCC	2 cut(s)	5, 33
Bso31I	GGTCTC	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	482
Bsp143I	GATC	6 cut(s)	106, 249, 354, 377, 422, 434
BspACI	CCGC	2 cut(s)	240, 267
BspANI	GGCC	2 cut(s)	5, 33
BspCNI	CTCAG	2 cut(s)	286, 306
BspMI	ACCTGC	1 cut(s)	2
BspPI	GGATC	3 cut(s)	385, 429, 430
BspTI	CTTAAG	1 cut(s)	77
BspTNI	GGTCTC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	234
BssMI	GATC	6 cut(s)	106, 249, 354, 377, 422, 434
BstAFI	CTTAAG	1 cut(s)	77
BstC8I	GCNNGC	4 cut(s)	187, 191, 195, 328
BstDEI	CTNAG	2 cut(s)	273, 314
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstHHI	GCGC	2 cut(s)	230, 279
BstKTI	GATC	6 cut(s)	109, 252, 357, 380, 425, 437
BstMAI	GTCTC	2 cut(s)	20, 145
BstMBI	GATC	6 cut(s)	106, 249, 354, 377, 422, 434
BstMCI	CGRYCG	1 cut(s)	134
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 336, 486
BstNSI	RCATGY	2 cut(s)	123, 400
BstSLI	GKGCMC	1 cut(s)	482
BstX2I	RGATCY	1 cut(s)	434
BstYI	RGATCY	1 cut(s)	434
BsuRI	GGCC	2 cut(s)	5, 33
BtsIMutI	CAGTG	1 cut(s)	102
BveI	ACCTGC	1 cut(s)	2
Cac8I	GCNNGC	4 cut(s)	187, 191, 195, 328
CfoI	GCGC	2 cut(s)	230, 279
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	263
CspCI	CAANNNNNGTGG	2 cut(s)	286, 321
CviAII	CATG	3 cut(s)	8, 120, 397
CviJI	RGCY	8 cut(s)	5, 33, 50, 96, 193, 197, 326, 461
CviKI_1	RGCY	8 cut(s)	5, 33, 50, 96, 193, 197, 326, 461
DdeI	CTNAG	2 cut(s)	273, 314
DpnI	GATC	6 cut(s)	108, 251, 356, 379, 424, 436
DpnII	GATC	6 cut(s)	106, 249, 354, 377, 422, 434
EciI	GGCGGA	1 cut(s)	256
Eco31I	GGTCTC	1 cut(s)	20
EcoNI	CCTNNNNNAGG	1 cut(s)	27
FaeI	CATG	3 cut(s)	11, 123, 400
FaiI	YATR	8 cut(s)	9, 60, 62, 67, 121, 179, 398, 402
FatI	CATG	3 cut(s)	7, 119, 396
FbaI	TGATCA	2 cut(s)	106, 354
FblI	GTMKAC	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	240
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	1 cut(s)	462
GlaI	GCGC	2 cut(s)	229, 278
GluI	GCNGC	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	5, 33
HapII	CCGG	1 cut(s)	134
HgaI	GACGC	1 cut(s)	263
HhaI	GCGC	2 cut(s)	230, 279
Hin1II	CATG	3 cut(s)	11, 123, 400
Hin6I	GCGC	2 cut(s)	228, 277
HinP1I	GCGC	2 cut(s)	228, 277
HincII	GTYRAC	1 cut(s)	131
HindII	GTYRAC	1 cut(s)	131
HinfI	GANTC	1 cut(s)	404
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	1 cut(s)	131
Hpy188I	TCNGA	4 cut(s)	87, 212, 315, 377
Hpy188III	TCNNGA	2 cut(s)	17, 333
Hpy8I	GTNNAC	1 cut(s)	131
Hpy99I	CGWCG	2 cut(s)	257, 395
HpyAV	CCTTC	2 cut(s)	356, 413
HpyCH4V	TGCA	4 cut(s)	11, 297, 339, 447
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 336, 486
HpyF3I	CTNAG	2 cut(s)	273, 314
Hsp92II	CATG	3 cut(s)	11, 123, 400
HspAI	GCGC	2 cut(s)	228, 277
Ksp22I	TGATCA	2 cut(s)	106, 354
Kzo9I	GATC	6 cut(s)	106, 249, 354, 377, 422, 434
LmnI	GCTCC	3 cut(s)	55, 93, 225
LpnPI	CCDG	4 cut(s)	111, 147, 179, 183
LweI	GCATC	1 cut(s)	326
MaeI	CTAG	1 cut(s)	462
MalI	GATC	6 cut(s)	108, 251, 356, 379, 424, 436
MboI	GATC	6 cut(s)	106, 249, 354, 377, 422, 434
MboII	GAAGA	1 cut(s)	259
MfeI	CAATTG	1 cut(s)	451
MflI	RGATCY	1 cut(s)	434
MhlI	GDGCHC	1 cut(s)	482
MluCI	AATT	3 cut(s)	55, 345, 451
MmeI	TCCRAC	2 cut(s)	50, 190
MnlI	CCTC	6 cut(s)	33, 132, 233, 280, 309, 458
MseI	TTAA	1 cut(s)	78
MspCI	CTTAAG	1 cut(s)	77
MspI	CCGG	1 cut(s)	134
MunI	CAATTG	1 cut(s)	451
MwoI	GCNNNNNNNGC	3 cut(s)	236, 336, 486
NdeII	GATC	6 cut(s)	106, 249, 354, 377, 422, 434
NlaIII	CATG	3 cut(s)	11, 123, 400
NspI	RCATGY	2 cut(s)	123, 400
PciI	ACATGT	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	404
PkrI	GCNGC	1 cut(s)	241
PscI	ACATGT	1 cut(s)	396
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	434
SalI	GTCGAC	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	6 cut(s)	106, 249, 354, 377, 422, 434
Sau96I	GGNCC	1 cut(s)	4
SduI	GDGCHC	1 cut(s)	482
SfaNI	GCATC	1 cut(s)	326
SmlI	CTYRAG	2 cut(s)	77, 331
SmoI	CTYRAG	2 cut(s)	77, 331
Sse9I	AATT	3 cut(s)	55, 345, 451
SsiI	CCGC	2 cut(s)	240, 267
SspMI	CTAG	1 cut(s)	462
TaqI	TCGA	5 cut(s)	18, 130, 252, 390, 425
TasI	AATT	3 cut(s)	55, 345, 451
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	1 cut(s)	404
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	1 cut(s)	109
TspDTI	ATGAA	2 cut(s)	250, 417
TspRI	CASTG	1 cut(s)	109
Vha464I	CTTAAG	1 cut(s)	77
XagI	CCTNNNNNAGG	1 cut(s)	27
XceI	RCATGY	2 cut(s)	123, 400
XmiI	GTMKAC	1 cut(s)	130
XspI	CTAG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.