Rorug02G0511700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010379
Physical Location & Seq
Forward (+)
64235102 .. 64235935
834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0511700.1

Sequence Viewer

Length: 834 bp
ATGAATGAGATGTTGAGCCAGTGGGAGAAAGAAGGCGGGGTCCCATGGAGTACAAACAGGAGGAACTACCTTAGATCTTTCTTGAACTCTAATGCCCTACTCGATGTCGGCTTTATCGGTCAAAGCTTCACTTGGGCCAGGAAGGAAGGGGATACCATTGTGCTTCAGGAGAGGTTGGATAGAGGCTTAGTAGATGAAAATTGGTTCCTTGCTTGGCCGGACACCTCACTAACTCATCTCACCAGAATTGGTTCGGACCATAACCCAATTCTCCTTAGTACGCACCCCACTGCCGGTAGAGGTAAGCCTACCTTCAGGTTTGAGGCTTCATGGACTGCTGAAAGGGAGATGGACCCACTAATTCAGGAGTGTTGGGCGGACTGCCCTAACTCCTCCAGTATCAAGAATTGGACGGACAACCTTAACAGATGTAGAACTCGCCTTAGAAGCTGGAGTAGCAAGAGATTCCCCAAGTGTAATAGAAAGGTGATAAAAGACTCCCTTCTGGAGTTGGAAGATCTCCAAACTCATTGCCCTTATACTAGTTCAGTTCGCCAACAAGAATTATCCTCTACTCTAGCAGAACATTGGGTCCGGGCAGAAGTTTACTGGCAACAAAGATCTAGGGTGAATTGGCTAAAATCGGGGGACTCAAACACCAGGTTTTTCCACCTCTCCACTATCCACAGAAGGCAAAGAAATAGAATTTTGAAGATCCAAAATGAGGATGATGTTTGGGTAGTAGGTGAAAACCTGATCAGGAGGGAGTTTGAATCTCAATTCAAGCGTGTCTTTACCGGTACGGGTATTCGGCAGTGGGGGGGGAGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

277

Amino Acids

32.65

Weight (kDa)

9.34

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010379)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15802
fragaria_vesca FvH4_6g46430 FvH4_6g46430 FvH4_6g46430 FvH4_6g46430 FvH4_6g46430
malus_domestica MD09G1073800.v1.1 MD17G1065300.v1.1
prunus_persica Prupe.3G249500_v2.0.a1
pyrus_communis pycom09g00100 pycom17g06520
rosa_chinensis RchiOBHm_Chr2g0164961
rosa_laevigata RLG00000021502
rosa_multiflora Rmu_sc0001097.1_g000012
rosa_roxburghii Rroxscaffold_2G00086150
rosa_rugosa Rorug02G0511700 Rorug02G0511800
rosa_samantha Rh2AG580000 Rh2BG591100 Rh2DG601400
rosa_wichuraiana Rw2G048140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 36, 377
AclWI GGATC 1 cut(s) 709
AcoI YGGCCR 1 cut(s) 215
AcsI RAATTY 1 cut(s) 705
AcuI CTGAAG 2 cut(s) 149, 298
AfaI GTAC 3 cut(s) 52, 280, 802
AfiI CCNNNNNNNGG 2 cut(s) 293, 724
AgeI ACCGGT 1 cut(s) 797
AgsI TTSAA 4 cut(s) 85, 712, 773, 784
AhlI ACTAGT 1 cut(s) 542
AjnI CCWGG 2 cut(s) 137, 659
AloI GAACNNNNNNTCC 2 cut(s) 576, 608
AluBI AGCT 2 cut(s) 126, 450
AluI AGCT 2 cut(s) 126, 450
AlwI GGATC 1 cut(s) 709
AoxI GGCC 2 cut(s) 135, 215
ApoI RAATTY 1 cut(s) 705
AsiGI ACCGGT 1 cut(s) 797
Asp700I GAANNNNTTC 1 cut(s) 250
AspS9I GGNCC 5 cut(s) 40, 135, 256, 352, 592
AsuC2I CCSGG 1 cut(s) 596
AsuHPI GGTGA 4 cut(s) 232, 499, 640, 758
AvaII GGWCC 4 cut(s) 40, 256, 352, 592
BaeI ACNNNNGTAYC 2 cut(s) 144, 177
BccI CCATC 1 cut(s) 343
BciT130I CCWGG 2 cut(s) 139, 661
BciVI GTATCC 1 cut(s) 145
BclI TGATCA 1 cut(s) 756
BcnI CCSGG 1 cut(s) 596
BcuI ACTAGT 1 cut(s) 542
BfaI CTAG 3 cut(s) 543, 578, 624
BfuI GTATCC 1 cut(s) 145
BglII AGATCT 3 cut(s) 74, 517, 620
Bme1390I CCNGG 3 cut(s) 139, 596, 661
Bme18I GGWCC 4 cut(s) 40, 256, 352, 592
BmgT120I GGNCC 5 cut(s) 40, 135, 256, 352, 592
BmiI GGNNCC 5 cut(s) 41, 42, 206, 354, 593
BmrFI CCNGG 3 cut(s) 139, 596, 661
BpmI CTGGAG 3 cut(s) 379, 472, 527
BpuMI CCSGG 1 cut(s) 596
BsaJI CCNNGG 1 cut(s) 44
BsaWI WCCGGW 1 cut(s) 797
Bsc4I CCNNNNNNNGG 2 cut(s) 293, 724
Bse118I RCCGGY 2 cut(s) 293, 797
Bse1I ACTGG 3 cut(s) 19, 396, 614
Bse3DI GCAATG 1 cut(s) 529
BseBI CCWGG 2 cut(s) 139, 661
BseDI CCNNGG 1 cut(s) 44
BseGI GGATG 1 cut(s) 733
BseLI CCNNNNNNNGG 2 cut(s) 293, 724
BseMI GCAATG 1 cut(s) 529
BseNI ACTGG 3 cut(s) 19, 396, 614
BseRI GAGGAG 1 cut(s) 382
BshFI GGCC 2 cut(s) 137, 217
BshTI ACCGGT 1 cut(s) 797
BsiSI CCGG 4 cut(s) 218, 294, 595, 798
BslFI GGGAC 2 cut(s) 26, 662
BslI CCNNNNNNNGG 2 cut(s) 293, 724
BsmFI GGGAC 2 cut(s) 26, 662
BsnI GGCC 2 cut(s) 137, 217
Bsp143I GATC 5 cut(s) 74, 517, 620, 714, 756
Bsp19I CCATGG 1 cut(s) 44
BspACI CCGC 2 cut(s) 36, 377
BspANI GGCC 2 cut(s) 137, 217
BspLI GGNNCC 5 cut(s) 41, 42, 206, 354, 593
BspPI GGATC 1 cut(s) 709
BsrDI GCAATG 1 cut(s) 529
BsrFI RCCGGY 2 cut(s) 293, 797
BsrI ACTGG 3 cut(s) 19, 396, 614
BssAI RCCGGY 2 cut(s) 293, 797
BssECI CCNNGG 1 cut(s) 44
BssMI GATC 5 cut(s) 74, 517, 620, 714, 756
BssT1I CCWWGG 1 cut(s) 44
Bst2UI CCWGG 2 cut(s) 139, 661
BstDEI CTNAG 4 cut(s) 71, 187, 275, 443
BstDSI CCRYGG 1 cut(s) 44
BstF5I GGATG 1 cut(s) 733
BstKTI GATC 5 cut(s) 77, 520, 623, 717, 759
BstMBI GATC 5 cut(s) 74, 517, 620, 714, 756
BstMWI GCNNNNNNNGC 2 cut(s) 447, 456
BstNI CCWGG 2 cut(s) 139, 661
BstSCI CCNGG 3 cut(s) 137, 594, 659
BstX2I RGATCY 4 cut(s) 74, 517, 620, 714
BstYI RGATCY 4 cut(s) 74, 517, 620, 714
BsuI GTATCC 1 cut(s) 145
BsuRI GGCC 2 cut(s) 137, 217
BtgI CCRYGG 1 cut(s) 44
BtsCI GGATG 1 cut(s) 733
BtsI GCAGTG 2 cut(s) 288, 821
BtsIMutI CAGTG 3 cut(s) 26, 288, 821
Cfr10I RCCGGY 2 cut(s) 293, 797
Cfr13I GGNCC 5 cut(s) 40, 135, 256, 352, 592
CsiI ACCWGGT 1 cut(s) 659
Csp6I GTAC 3 cut(s) 51, 279, 801
CspAI ACCGGT 1 cut(s) 797
CviAII CATG 2 cut(s) 45, 330
CviQI GTAC 3 cut(s) 51, 279, 801
DdeI CTNAG 4 cut(s) 71, 187, 275, 443
DpnI GATC 5 cut(s) 76, 519, 622, 716, 758
DpnII GATC 5 cut(s) 74, 517, 620, 714, 756
EaeI YGGCCR 1 cut(s) 215
EciI GGCGGA 1 cut(s) 392
Eco130I CCWWGG 1 cut(s) 44
Eco47I GGWCC 4 cut(s) 40, 256, 352, 592
Eco57I CTGAAG 2 cut(s) 149, 298
EcoO109I RGGNCCY 1 cut(s) 40
EcoRII CCWGG 2 cut(s) 137, 659
EcoT14I CCWWGG 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 44
FaeI CATG 2 cut(s) 48, 333
FaiI YATR 4 cut(s) 46, 261, 331, 540
FalI AAGNNNNNCTT 8 cut(s) 115, 147, 296, 328, 486, 518, 776, 808
FaqI GGGAC 2 cut(s) 26, 662
FatI CATG 2 cut(s) 44, 329
FauI CCCGC 1 cut(s) 29
FbaI TGATCA 1 cut(s) 756
FokI GGATG 1 cut(s) 740
FspBI CTAG 3 cut(s) 543, 578, 624
GsuI CTGGAG 3 cut(s) 379, 472, 527
HaeIII GGCC 2 cut(s) 137, 217
HapII CCGG 4 cut(s) 218, 294, 595, 798
Hin1II CATG 2 cut(s) 48, 333
HindIII AAGCTT 1 cut(s) 124
HinfI GANTC 4 cut(s) 465, 497, 650, 773
HpaII CCGG 4 cut(s) 218, 294, 595, 798
HphI GGTGA 4 cut(s) 232, 499, 640, 758
Hpy166II GTNNAC 1 cut(s) 607
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 6 cut(s) 82, 167, 365, 403, 506, 760
Hpy8I GTNNAC 1 cut(s) 607
HpyAV CCTTC 6 cut(s) 26, 136, 140, 322, 512, 684
HpyF10VI GCNNNNNNNGC 2 cut(s) 447, 456
HpyF3I CTNAG 4 cut(s) 71, 187, 275, 443
Hsp92II CATG 2 cut(s) 48, 333
KflI GGGWCCC 1 cut(s) 40
Ksp22I TGATCA 1 cut(s) 756
Kzo9I GATC 5 cut(s) 74, 517, 620, 714, 756
MabI ACCWGGT 1 cut(s) 659
MaeI CTAG 3 cut(s) 543, 578, 624
MalI GATC 5 cut(s) 76, 519, 622, 716, 758
MboI GATC 5 cut(s) 74, 517, 620, 714, 756
MboII GAAGA 2 cut(s) 527, 724
MflI RGATCY 4 cut(s) 74, 517, 620, 714
MluCI AATT 9 cut(s) 199, 246, 267, 360, 406, 563, 631, 705, 779
MlyI GAGTC 2 cut(s) 491, 644
MmeI TCCRAC 2 cut(s) 156, 492
MroXI GAANNNNTTC 1 cut(s) 250
MseI TTAA 1 cut(s) 423
MspI CCGG 4 cut(s) 218, 294, 595, 798
MspR9I CCNGG 3 cut(s) 139, 596, 661
MvaI CCWGG 2 cut(s) 139, 661
MwoI GCNNNNNNNGC 2 cut(s) 447, 456
NciI CCSGG 1 cut(s) 596
NcoI CCATGG 1 cut(s) 44
NdeII GATC 5 cut(s) 74, 517, 620, 714, 756
NlaIII CATG 2 cut(s) 48, 333
NlaIV GGNNCC 5 cut(s) 41, 42, 206, 354, 593
PdmI GAANNNNTTC 1 cut(s) 250
PfeI GAWTC 2 cut(s) 465, 773
PinAI ACCGGT 1 cut(s) 797
PleI GAGTC 2 cut(s) 491, 644
PpsI GAGTC 2 cut(s) 491, 644
PpuMI RGGWCCY 1 cut(s) 40
Psp5II RGGWCCY 1 cut(s) 40
Psp6I CCWGG 2 cut(s) 137, 659
PspGI CCWGG 2 cut(s) 137, 659
PspN4I GGNNCC 5 cut(s) 41, 42, 206, 354, 593
PspPI GGNCC 5 cut(s) 40, 135, 256, 352, 592
PspPPI RGGWCCY 1 cut(s) 40
PsuI RGATCY 4 cut(s) 74, 517, 620, 714
RsaI GTAC 3 cut(s) 52, 280, 802
RsaNI GTAC 3 cut(s) 51, 279, 801
SaqAI TTAA 1 cut(s) 423
Sau3AI GATC 5 cut(s) 74, 517, 620, 714, 756
Sau96I GGNCC 5 cut(s) 40, 135, 256, 352, 592
SchI GAGTC 2 cut(s) 491, 644
ScrFI CCNGG 3 cut(s) 139, 596, 661
SexAI ACCWGGT 1 cut(s) 659
SinI GGWCC 4 cut(s) 40, 256, 352, 592
SpeI ACTAGT 1 cut(s) 542
Sse9I AATT 9 cut(s) 199, 246, 267, 360, 406, 563, 631, 705, 779
SsiI CCGC 2 cut(s) 36, 377
SspMI CTAG 3 cut(s) 543, 578, 624
StyD4I CCNGG 3 cut(s) 137, 594, 659
StyI CCWWGG 1 cut(s) 44
TaqI TCGA 1 cut(s) 102
TaqII GACCGA 1 cut(s) 107
TasI AATT 9 cut(s) 199, 246, 267, 360, 406, 563, 631, 705, 779
TatI WGTACW 1 cut(s) 50
TfiI GAWTC 2 cut(s) 465, 773
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 3 cut(s) 26, 295, 821
TspDTI ATGAA 3 cut(s) 17, 210, 318
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 3 cut(s) 26, 295, 821
VpaK11BI GGWCC 4 cut(s) 40, 256, 352, 592
XapI RAATTY 1 cut(s) 705
XmnI GAANNNNTTC 1 cut(s) 250
XspI CTAG 3 cut(s) 543, 578, 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.