Rorug02G0511800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010379
Physical Location & Seq
Forward (+)
64238303 .. 64241954
3652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0511800.1

Sequence Viewer

Length: 3009 bp
ATGAATACTAGTCGATTGGATGATTGTCTCCTTTCCAACTTCTGCAATCTCATCACTCTACAGTTAGATGATACTAACTATGTCACATGGAGATTCATGCTAGAGTCAATGTTGGTAGGGTGTGATCTAATGGGATATATTGATGGGTCTGTGCCTTGTCCTCCAAAATACAAAAGCACAGAGGCTGGTACTACTCCTGAGTTTACACAAGAGTATGAGGATTGGAGGAAGACTGACTCTGCCTTGATTACTTTACTAGCTGCTACTTTGTCATCAGATGCTCTTTCATTCATTGTTGGGAGTAAAACCTCAAAAGAAGTTTGGTTTTTGCTTGAGGAGAGATATGCTAAACTTTCAAAGTTCAAAGCTTTCGACCTTCAGAACTCTATGCAGAAAATTCAGAAAGGTAATGATAGCATTGACAAGTATATGGAGCGGTTTAAAACTATTCGAGACAAACTTTCATTAGCTGGAGTTTATATTTCTGATGAAGATATAGTTACTCTGATCTTGAATGGATTGCCTATTGATTTCTTAACCATAAAGATTGTCATCAGAGCTAGTAAGACGCCGATCACTCTAAGCCAGCTTCGCACACTATTATTGGATTTTGAGTCTGACATTGTTCGAGAATCAAGCTCCCTTGCTCCTACTCCCGTGACTACATCTGTTGTTAATCATGTGAACCAATCTCTTGGTACACTTCTTAATCCTGATGGAAATTTTGTTCACACCTCACCATATTTGCCTACTGGTTTTTCTCAACATCTTGGTGACTTTAATCCTGCTAGTGTAGCTATTCATTTTAATTGCTCTACTCCTGGTAGCACAAACACATATAATATGCCTACACACTACAATGCATATAATATGTCTCCTGTTAGCACAAGTCAAGTTGGATATGCTTCACCACCAACCACTATGTCAACCAACTTTGGATTTGTGAAACCTCCTGACGTACCTGCTACAAATGCATATCAGTCAACATTTCCAACCAGTCTTGCGGTCCACAATCTTGAGTACCCTCAATATCCTGCTCATAATTTCAATGGATCATTTATTCCCCCATCTGGATTTGTGACTCAAAATGGAGGTCTACATGGTAACTTTGGTACCAACAATGGAAGCAGTTTGTCTCAGGAATTTAACTCAATGCAACCTGGAGATGAACAGTTTGTAATGAAAGTTTCAAACAATATGATTGCTTTGATAATTGGCAAGGGGTTTGAGACTATTAAGAATATGCAAACCAAGTCAGGATCTCGTATTCGGATTGTACCATTGCACCTTCCTCCTGGTGATAAGTCAACTGAGAGATCAATATATATAAATGGAGGTAAAGAGCAAATTGAGGCAGCCAAAGAATTGATAAACGAAGTAATCAGTGAAAAGCGTTTATTAAATGCATCTGGAACCAATAGCTATATGCAGCAGCCATCCTATCCCAATGATAAAGTTACTAAAGCTGGATTTAATAGCAACTCTCAGAGTGTTTACTTTCCTTGTGATATTTGTCAAATATGCTCACAGTTTGGTCACTTTGCTAAAACTTGTCCTCAAAGATCTGCCCCTAGGCAAGTTATTGCTTATGGATCTTATATGCAGTGTCGTTTTTGTTCCAAGACAGGTCATAGTGCAGCTGAATGTCTTTGTAAGCATAAATATGCCTATCAACCAACACCTCAAGCTGTGGTTACTTCCTTCTCAACTCAAACTATGCCAGCATCATCCTATCAATCTCAACAAGAATTTTGGCCGGCTGATACTTGTCCTCTAGCTGAGTTCAATGCCAAGAGTCTAACTCAAGAGGAGGCGAACTATATTCTAAAAGTACCCATTGGTCTGGAAGGGGAAGATGATATTTTAGTCTGGCCGTGGAACAAGGATGGAAGATACACAGTGAAGTCAGGTTATCATTGGGGGCACAAGAATAGCTTTAATCCACACCAAACAAGCTGCAGCTCATCCCACATTTATGACCCAATGATCTGGAAGTGCCTTTGGAAAATCAAAACCCTGCCTAAAGTTAGACTATTCCTGTGGAGGGTCCTAATTGGTGCAGCCCCAACTATGTACCATTTGTTCAAAAGGCGAGTTACCCTGTCTCCCCTATGCCCCATCTGTGGGGAGACAGAGGAAACTTTTGAACATTTACTTTTCCTTTGCCCGTGGGTGGAGGGGGTTTGGTTTGGCTCACCACTGGGATTACGTGTTGATAAGCAGAACTTTACAACTCTGGATGTTTGGTTCTTAAAGATAGCAAGATCACAACATAATGATAGCAATCGGAACAGAGTACTTACGTTGATGAGCTTCTTATGCTGGGCTATTTGGAAGGCCAGATGCCTGTTTGTGTATCAATCCAAACCCTTATCACCTTACTTGACCATCTCCTCTGCGGTATCCTTAGCATCGGAATTCCAAGCAGCAACGCTGATGCCAAATCACGAGTTGGGAATGATTCCGTCTGCTACCAGCAATCGGGTGGTGCGTCCCCAGACTCATTGGATGCCCCCTCCTCGTGGATTTTTCAAAGTAAACTGTGATGCAGCCTGGGGGCCACCGTCAACAGCAGGACTGGGAGTCGTTGTAAGAGACTCTACCGGGAGGAGCATCAGTGGATTAGCCATTAAAACCACTTGCGGAACAGTTGCGGAAGCGGAAGCATCTGCTATTCTCCATGGCATCTCCCTGGCAAGTACCCTGAATCTGAGAAAGGTTCACATCGAATCAGATGCAAAAGAGGTAGTCCTGGATCTAAATGGGTTAGGTCGGGGAAAGAACTGGAAGACCTACCCAATACTGGACCACATCCGAAGGCTAGCAACTGGTTTTGAAGAATGCAATTGGGACTGGGTTCCCCGTGAAGCGAACAAGGCTGCTCACTGTGCAGCGTCGCTTGCCTGCGGGACGGTGGGTCCTCAGCGATGGGCTAACCAGCCACCACCATCCCTCACCTTGGTACTAAGAAATGATGGTCTCCCATGCCCCCCGGCAACGGAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1002

Amino Acids

111.39

Weight (kDa)

8.12

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 38 - 207 1e-20 gag-polypeptide of LTR copia-type
KH_1 PF00013 393 - 459 1e-13 KH domain
zf-RVT PF13966 653 - 729 1.7e-15 zinc-binding in reverse transcriptase
RVT_3 PF13456 847 - 967 1.6e-24 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010379)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15802
fragaria_vesca FvH4_6g46430 FvH4_6g46430 FvH4_6g46430 FvH4_6g46430 FvH4_6g46430
malus_domestica MD09G1073800.v1.1 MD17G1065300.v1.1
prunus_persica Prupe.3G249500_v2.0.a1
pyrus_communis pycom09g00100 pycom17g06520
rosa_chinensis RchiOBHm_Chr2g0164961
rosa_laevigata RLG00000021502
rosa_multiflora Rmu_sc0001097.1_g000012
rosa_roxburghii Rroxscaffold_2G00086150
rosa_rugosa Rorug02G0511700 Rorug02G0511800
rosa_samantha Rh2AG580000 Rh2BG591100 Rh2DG601400
rosa_wichuraiana Rw2G048140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 970
Acc65I GGTACC 1 cut(s) 1112
AccB1I GGYRCC 1 cut(s) 1112
AccBSI CCGCTC 1 cut(s) 436
AccI GTMKAC 1 cut(s) 1096
AciI CCGC 7 cut(s) 436, 1004, 2399, 2643, 2654, 2660, 2907
AclWI GGATC 4 cut(s) 1060, 1267, 1600, 2763
AcoI YGGCCR 2 cut(s) 1754, 1871
AcsI RAATTY 5 cut(s) 396, 721, 1142, 1748, 2417
AcuI CTGAAG 1 cut(s) 362
AcyI GRCGYC 1 cut(s) 569
AflIII ACRYGT 1 cut(s) 2209
AhdI GACNNNNNGTC 2 cut(s) 2582, 2916
AhlI ACTAGT 1 cut(s) 8
AjnI CCWGG 6 cut(s) 820, 1159, 1294, 2552, 2691, 2751
AloI GAACNNNNNNTCC 4 cut(s) 711, 743, 2231, 2263
Alw26I GTCTC 9 cut(s) 32, 447, 879, 1140, 1223, 2109, 2123, 2589, 2984
AlwI GGATC 4 cut(s) 1060, 1267, 1600, 2763
AlwNI CAGNNNCTG 1 cut(s) 185
AoxI GGCC 4 cut(s) 1754, 1871, 2337, 2558
ApoI RAATTY 5 cut(s) 396, 721, 1142, 1748, 2417
ArsI GACNNNNNNTTYG 2 cut(s) 1078, 1110
Asp718I GGTACC 1 cut(s) 1112
AspA2I CCTAGG 1 cut(s) 1571
AspS9I GGNCC 5 cut(s) 1006, 2047, 2558, 2806, 2918
AsuC2I CCSGG 2 cut(s) 2605, 2993
AsuHPI GGTGA 7 cut(s) 729, 785, 900, 1310, 2187, 2367, 2947
AsuNHI GCTAGC 1 cut(s) 2821
AvaII GGWCC 4 cut(s) 1006, 2047, 2806, 2918
AvrII CCTAGG 1 cut(s) 1571
BaeGI GKGCMC 1 cut(s) 1926
BaeI ACNNNNGTAYC 2 cut(s) 1096, 1129
BanI GGYRCC 1 cut(s) 1112
BauI CACGAG 2 cut(s) 2447, 2520
BbsI GAAGAC 2 cut(s) 236, 2795
BbvCI CCTCAGC 1 cut(s) 2922
BceAI ACGGC 1 cut(s) 1858
BcgI CGANNNNNNTGC 2 cut(s) 2717, 2751
BciT130I CCWGG 6 cut(s) 822, 1161, 1296, 2554, 2693, 2753
BciVI GTATCC 1 cut(s) 2413
BcnI CCSGG 2 cut(s) 2605, 2993
BcoDI GTCTC 9 cut(s) 32, 447, 879, 1140, 1223, 2109, 2123, 2589, 2984
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 8 cut(s) 9, 101, 257, 561, 789, 1572, 1775, 2822
BfmI CTRYAG 2 cut(s) 59, 1957
BfuAI ACCTGC 1 cut(s) 970
BfuI GTATCC 1 cut(s) 2413
BglII AGATCT 1 cut(s) 1562
BlnI CCTAGG 1 cut(s) 1571
BmcAI AGTACT 1 cut(s) 2298
Bme1390I CCNGG 8 cut(s) 822, 1161, 1296, 2554, 2605, 2693, 2753, 2993
Bme18I GGWCC 4 cut(s) 1006, 2047, 2806, 2918
BmeRI GACNNNNNGTC 2 cut(s) 2582, 2916
BmgT120I GGNCC 5 cut(s) 1006, 2047, 2558, 2806, 2918
BmiI GGNNCC 6 cut(s) 1114, 1414, 2048, 2559, 2859, 2919
BmrFI CCNGG 8 cut(s) 822, 1161, 1296, 2554, 2605, 2693, 2753, 2993
BmrI ACTGGG 3 cut(s) 2210, 2588, 2863
BmtI GCTAGC 1 cut(s) 2825
BmuI ACTGGG 3 cut(s) 2210, 2588, 2863
BpiI GAAGAC 2 cut(s) 236, 2795
BplI GAGNNNNNCTC 2 cut(s) 1786, 1818
BpmI CTGGAG 2 cut(s) 492, 1182
Bpu10I CCTNAGC 2 cut(s) 2407, 2922
BpuEI CTTGAG 4 cut(s) 353, 1037, 1668, 1788
BpuMI CCSGG 2 cut(s) 2605, 2993
BsaAI YACGTR 1 cut(s) 2210
BsaBI GATNNNNATC 2 cut(s) 551, 2283
BsaHI GRCGYC 1 cut(s) 569
BsaI GGTCTC 1 cut(s) 2984
BsaJI CCNNGG 8 cut(s) 1571, 1874, 2168, 2553, 2680, 2691, 2958, 2991
BsaXI ACNNNNNCTCC 6 cut(s) 2089, 2119, 2574, 2602, 2604, 2632
Bse118I RCCGGY 1 cut(s) 1756
Bse1I ACTGG 8 cut(s) 757, 996, 2205, 2583, 2789, 2808, 2833, 2858
Bse3DI GCAATG 1 cut(s) 1280
Bse8I GATNNNNATC 2 cut(s) 551, 2283
BseBI CCWGG 6 cut(s) 822, 1161, 1296, 2554, 2693, 2753
BseDI CCNNGG 8 cut(s) 1571, 1874, 2168, 2553, 2680, 2691, 2958, 2991
BseGI GGATG 9 cut(s) 25, 1436, 1727, 1891, 1964, 2245, 2514, 2811, 2948
BseJI GATNNNNATC 2 cut(s) 551, 2283
BseMI GCAATG 1 cut(s) 1280
BseMII CTCAG 7 cut(s) 189, 1151, 1302, 1499, 1770, 2702, 2936
BseNI ACTGG 8 cut(s) 757, 996, 2205, 2583, 2789, 2808, 2833, 2858
BseRI GAGGAG 5 cut(s) 350, 1823, 2383, 2508, 2623
BseSI GKGCMC 1 cut(s) 1926
BseYI CCCAGC 1 cut(s) 2322
BsgI GTGCAG 3 cut(s) 1656, 2079, 2910
BshFI GGCC 4 cut(s) 1756, 1873, 2339, 2560
BshNI GGYRCC 1 cut(s) 1112
BsiSI CCGG 3 cut(s) 1757, 2604, 2993
BslFI GGGAC 3 cut(s) 2478, 2864, 2923
BsmAI GTCTC 9 cut(s) 32, 447, 879, 1140, 1223, 2109, 2123, 2589, 2984
BsmFI GGGAC 3 cut(s) 2478, 2864, 2923
BsmI GAATGC 1 cut(s) 2846
BsnI GGCC 4 cut(s) 1756, 1873, 2339, 2560
Bso31I GGTCTC 1 cut(s) 2984
Bsp1286I GDGCHC 1 cut(s) 1926
Bsp19I CCATGG 1 cut(s) 2680
BspACI CCGC 7 cut(s) 436, 1004, 2399, 2643, 2654, 2660, 2907
BspANI GGCC 4 cut(s) 1756, 1873, 2339, 2560
BspCNI CTCAG 7 cut(s) 190, 1150, 1303, 1498, 1771, 2703, 2935
BspLI GGNNCC 6 cut(s) 1114, 1414, 2048, 2559, 2859, 2919
BspMAI CTGCAG 1 cut(s) 1961
BspMI ACCTGC 1 cut(s) 970
BspOI GCTAGC 1 cut(s) 2825
BspPI GGATC 4 cut(s) 1060, 1267, 1600, 2763
BspT107I GGYRCC 1 cut(s) 1112
BspTNI GGTCTC 1 cut(s) 2984
BsrBI CCGCTC 1 cut(s) 436
BsrDI GCAATG 1 cut(s) 1280
BsrFI RCCGGY 1 cut(s) 1756
BsrI ACTGG 8 cut(s) 757, 996, 2205, 2583, 2789, 2808, 2833, 2858
BssAI RCCGGY 1 cut(s) 1756
BssECI CCNNGG 8 cut(s) 1571, 1874, 2168, 2553, 2680, 2691, 2958, 2991
BssNI GRCGYC 1 cut(s) 569
BssSI CACGAG 2 cut(s) 2447, 2520
BssT1I CCWWGG 3 cut(s) 1571, 2680, 2958
Bst2BI CACGAG 2 cut(s) 2447, 2520
Bst2UI CCWGG 6 cut(s) 822, 1161, 1296, 2554, 2693, 2753
Bst4CI ACNGT 9 cut(s) 63, 1173, 1530, 1900, 2543, 2565, 2650, 2888, 2914
BstACI GRCGYC 1 cut(s) 569
BstBAI YACGTR 1 cut(s) 2210
BstC8I GCNNGC 6 cut(s) 587, 1722, 1758, 2823, 2901, 2905
BstDSI CCRYGG 3 cut(s) 1874, 2168, 2680
BstF5I GGATG 9 cut(s) 25, 1436, 1727, 1891, 1964, 2245, 2514, 2811, 2948
BstMAI GTCTC 9 cut(s) 32, 447, 879, 1140, 1223, 2109, 2123, 2589, 2984
BstMWI GCNNNNNNNGC 7 cut(s) 591, 794, 971, 2319, 2876, 2888, 2900
BstNI CCWGG 6 cut(s) 822, 1161, 1296, 2554, 2693, 2753
BstSCI CCNGG 8 cut(s) 820, 1159, 1294, 2552, 2603, 2691, 2751, 2991
BstSFI CTRYAG 2 cut(s) 59, 1957
BstSLI GKGCMC 1 cut(s) 1926
BstV2I GAAGAC 2 cut(s) 236, 2795
BstX2I RGATCY 4 cut(s) 1259, 1562, 1592, 2755
BstXI CCANNNNNNTGG 3 cut(s) 695, 1843, 1989
BstYI RGATCY 4 cut(s) 1259, 1562, 1592, 2755
BsuI GTATCC 1 cut(s) 2413
BsuRI GGCC 4 cut(s) 1756, 1873, 2339, 2560
BtgI CCRYGG 3 cut(s) 1874, 2168, 2680
BtgZI GCGATG 1 cut(s) 2941
BtsCI GGATG 9 cut(s) 25, 1436, 1727, 1891, 1964, 2245, 2514, 2811, 2948
BtsI GCAGTG 1 cut(s) 1610
BtsIMutI CAGTG 6 cut(s) 1390, 1610, 1905, 2198, 2623, 2884
BveI ACCTGC 1 cut(s) 970
Cac8I GCNNGC 6 cut(s) 587, 1722, 1758, 2823, 2901, 2905
CaiI CAGNNNCTG 1 cut(s) 185
Cfr10I RCCGGY 1 cut(s) 1756
Cfr13I GGNCC 5 cut(s) 1006, 2047, 2558, 2806, 2918
CseI GACGC 3 cut(s) 577, 2480, 2883
CviAII CATG 6 cut(s) 87, 97, 680, 1100, 2681, 2985
DraI TTTAAA 1 cut(s) 442
DriI GACNNNNNGTC 2 cut(s) 2582, 2916
EaeI YGGCCR 2 cut(s) 1754, 1871
Eam1105I GACNNNNNGTC 2 cut(s) 2582, 2916
Eco130I CCWWGG 3 cut(s) 1571, 2680, 2958
Eco31I GGTCTC 1 cut(s) 2984
Eco47I GGWCC 4 cut(s) 1006, 2047, 2806, 2918
Eco57I CTGAAG 1 cut(s) 362
EcoO109I RGGNCCY 2 cut(s) 2047, 2918
EcoRI GAATTC 1 cut(s) 2417
EcoRII CCWGG 6 cut(s) 820, 1159, 1294, 2552, 2691, 2751
EcoT14I CCWWGG 3 cut(s) 1571, 2680, 2958
EcoT22I ATGCAT 3 cut(s) 865, 976, 1408
ErhI CCWWGG 3 cut(s) 1571, 2680, 2958
FaeI CATG 6 cut(s) 90, 100, 683, 1103, 2684, 2988
FalI AAGNNNNNCTT 4 cut(s) 1919, 1951, 2210, 2242
FaqI GGGAC 3 cut(s) 2478, 2864, 2923
FatI CATG 6 cut(s) 86, 96, 679, 1099, 2680, 2984
FauI CCCGC 1 cut(s) 2900
FblI GTMKAC 1 cut(s) 1096
FokI GGATG 9 cut(s) 32, 1423, 1714, 1898, 1951, 2252, 2521, 2798, 2935
FspBI CTAG 8 cut(s) 9, 101, 257, 561, 789, 1572, 1775, 2822
GsaI CCCAGC 1 cut(s) 2326
GsuI CTGGAG 2 cut(s) 492, 1182
HaeIII GGCC 4 cut(s) 1756, 1873, 2339, 2560
HapII CCGG 3 cut(s) 1757, 2604, 2993
HgaI GACGC 3 cut(s) 577, 2480, 2883
Hin1I GRCGYC 1 cut(s) 569
Hin1II CATG 6 cut(s) 90, 100, 683, 1103, 2684, 2988
HincII GTYRAC 4 cut(s) 927, 984, 1308, 2568
HindII GTYRAC 4 cut(s) 927, 984, 1308, 2568
HindIII AAGCTT 1 cut(s) 366
HpaII CCGG 3 cut(s) 1757, 2604, 2993
HphI GGTGA 7 cut(s) 729, 785, 900, 1310, 2187, 2367, 2947
Hpy99I CGWCG 1 cut(s) 2899
HpyAV CCTTC 6 cut(s) 386, 1298, 1711, 1841, 2329, 2811
HpyCH4III ACNGT 9 cut(s) 63, 1173, 1530, 1900, 2543, 2565, 2650, 2888, 2914
HpyCH4IV ACGT 3 cut(s) 957, 2209, 2303
HpyF10VI GCNNNNNNNGC 7 cut(s) 591, 794, 971, 2319, 2876, 2888, 2900
HpySE526I ACGT 3 cut(s) 957, 2209, 2303
Hsp92I GRCGYC 1 cut(s) 569
Hsp92II CATG 6 cut(s) 90, 100, 683, 1103, 2684, 2988
KpnI GGTACC 1 cut(s) 1116
KroI GCCGGC 1 cut(s) 1756
KroNI GCCGGC 1 cut(s) 1758
LmnI GCTCC 4 cut(s) 433, 644, 652, 2610
MaeI CTAG 8 cut(s) 9, 101, 257, 561, 789, 1572, 1775, 2822
MaeII ACGT 3 cut(s) 957, 2209, 2303
MbiI CCGCTC 1 cut(s) 436
MboII GAAGA 6 cut(s) 241, 503, 1865, 1902, 2800, 2849
MfeI CAATTG 1 cut(s) 2845
MflI RGATCY 4 cut(s) 1259, 1562, 1592, 2755
MhlI GDGCHC 1 cut(s) 1926
MlyI GAGTC 8 cut(s) 113, 230, 623, 1075, 1804, 2494, 2591, 2592
MmeI TCCRAC 3 cut(s) 60, 877, 1016
Mph1103I ATGCAT 3 cut(s) 865, 976, 1408
MroNI GCCGGC 1 cut(s) 1756
MslI CAYNNNNRTG 4 cut(s) 771, 858, 1662, 1974
MspA1I CMGCKG 1 cut(s) 1640
MspI CCGG 3 cut(s) 1757, 2604, 2993
MspR9I CCNGG 8 cut(s) 822, 1161, 1296, 2554, 2605, 2693, 2753, 2993
MunI CAATTG 1 cut(s) 2845
Mva1269I GAATGC 1 cut(s) 2846
MvaI CCWGG 6 cut(s) 822, 1161, 1296, 2554, 2693, 2753
MwoI GCNNNNNNNGC 7 cut(s) 591, 794, 971, 2319, 2876, 2888, 2900
NaeI GCCGGC 1 cut(s) 1758
NciI CCSGG 2 cut(s) 2605, 2993
NcoI CCATGG 1 cut(s) 2680
NgoMIV GCCGGC 1 cut(s) 1756
NheI GCTAGC 1 cut(s) 2821
NlaIII CATG 6 cut(s) 90, 100, 683, 1103, 2684, 2988
NlaIV GGNNCC 6 cut(s) 1114, 1414, 2048, 2559, 2859, 2919
NmuCI GTSAC 5 cut(s) 82, 658, 773, 1078, 1535
NsiI ATGCAT 3 cut(s) 865, 976, 1408
PcsI WCGNNNNNNNCGW 1 cut(s) 2488
PctI GAATGC 1 cut(s) 2846
PdiI GCCGGC 1 cut(s) 1758
PfeI GAWTC 5 cut(s) 93, 632, 2461, 2707, 2729
PfoI TCCNGGA 1 cut(s) 2751
PleI GAGTC 8 cut(s) 112, 230, 622, 1075, 1803, 2494, 2591, 2591
PpsI GAGTC 8 cut(s) 112, 230, 622, 1075, 1803, 2494, 2591, 2591
Ppu21I YACGTR 1 cut(s) 2210
PpuMI RGGWCCY 2 cut(s) 2047, 2918
Psp5II RGGWCCY 2 cut(s) 2047, 2918
Psp6I CCWGG 6 cut(s) 820, 1159, 1294, 2552, 2691, 2751
PspFI CCCAGC 1 cut(s) 2322
PspGI CCWGG 6 cut(s) 820, 1159, 1294, 2552, 2691, 2751
PspN4I GGNNCC 6 cut(s) 1114, 1414, 2048, 2559, 2859, 2919
PspPI GGNCC 5 cut(s) 1006, 2047, 2558, 2806, 2918
PspPPI RGGWCCY 2 cut(s) 2047, 2918
PsrI GAACNNNNNNTAC 2 cut(s) 2066, 2098
PstI CTGCAG 1 cut(s) 1961
PstNI CAGNNNCTG 1 cut(s) 185
PsuI RGATCY 4 cut(s) 1259, 1562, 1592, 2755
PvuII CAGCTG 1 cut(s) 1640
RseI CAYNNNNRTG 4 cut(s) 771, 858, 1662, 1974
Sau96I GGNCC 5 cut(s) 1006, 2047, 2558, 2806, 2918
ScaI AGTACT 1 cut(s) 2298
SchI GAGTC 8 cut(s) 113, 230, 623, 1075, 1804, 2494, 2591, 2592
ScrFI CCNGG 8 cut(s) 822, 1161, 1296, 2554, 2605, 2693, 2753, 2993
SduI GDGCHC 1 cut(s) 1926
SfcI CTRYAG 2 cut(s) 59, 1957
SinI GGWCC 4 cut(s) 1006, 2047, 2806, 2918
SmiMI CAYNNNNRTG 4 cut(s) 771, 858, 1662, 1974
SmlI CTYRAG 4 cut(s) 332, 1016, 1683, 1803
SmoI CTYRAG 4 cut(s) 332, 1016, 1683, 1803
SpeI ACTAGT 1 cut(s) 8
SsiI CCGC 7 cut(s) 436, 1004, 2399, 2643, 2654, 2660, 2907
SspMI CTAG 8 cut(s) 9, 101, 257, 561, 789, 1572, 1775, 2822
StyD4I CCNGG 8 cut(s) 820, 1159, 1294, 2552, 2603, 2691, 2751, 2991
StyI CCWWGG 3 cut(s) 1571, 2680, 2958
TaaI ACNGT 9 cut(s) 63, 1173, 1530, 1900, 2543, 2565, 2650, 2888, 2914
TaiI ACGT 3 cut(s) 960, 2212, 2306
TaqI TCGA 5 cut(s) 13, 372, 451, 628, 2727
TatI WGTACW 1 cut(s) 2296
TfiI GAWTC 5 cut(s) 93, 632, 2461, 2707, 2729
TscAI CASTG 6 cut(s) 1390, 1610, 1905, 2205, 2623, 2891
TseFI GTSAC 5 cut(s) 82, 658, 773, 1078, 1535
Tsp45I GTSAC 5 cut(s) 82, 658, 773, 1078, 1535
TspDTI ATGAA 9 cut(s) 17, 85, 276, 280, 453, 504, 791, 1182, 1196
TspGWI ACGGA 1 cut(s) 2454
TspRI CASTG 6 cut(s) 1390, 1610, 1905, 2205, 2623, 2891
VpaK11BI GGWCC 4 cut(s) 1006, 2047, 2806, 2918
XapI RAATTY 5 cut(s) 396, 721, 1142, 1748, 2417
XcmI CCANNNNNNNNNTGG 1 cut(s) 2482
XmaJI CCTAGG 1 cut(s) 1571
XmiI GTMKAC 1 cut(s) 1096
XspI CTAG 8 cut(s) 9, 101, 257, 561, 789, 1572, 1775, 2822
ZrmI AGTACT 1 cut(s) 2298
Zsp2I ATGCAT 3 cut(s) 865, 976, 1408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.