Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0017697

Physical Location & Seq

Genomic Coordinates Reverse (-)

14088795 .. 14089745

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1152300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGATGTTTCATCACAAAATTCGGACTATTTATGTTTCCGAAAACTCTGCCGTGCATGTTCTTTCAAAAGATCATGCTTCTTTCTCCTCCTCTATTTTCTCTTAGCAGTTGTTTTTCTTGGTGTGATTGTATTGGTTGTAATCTTCCACTTAAAGCCCCAGAAGCCAGTTTTTTCCCTTCAAAATTTAAGCTTGGATTCGTATAAGCTCAACGCCTATTCGGGTTCAACCCTGTTTCTTTCATCTGTAATCACATTATCCCTGAATGCTACAAATCCTAACAAGTTTGGAATCTGGTATAGCCCTTCACGTCTTGAAACTCTGAGTCTTCATGATGGACTGCCTATTGGAACCATTCGGATTCCCGGTTTCCTTCAGCCTGCTCACAGCAGCAATGTGAGTTTCGAAACTAGGATTCTGTTTCCATGTGTAAATGTCAGCCAGATTGTTGCAGAGGCATCTTTGCAAGATGGTTCAAGGAAGAACATGTTTCAGATAAAAATAGTAGGCGATGTTGGAGCTCACCTGTTGGTATTTCATATAATTCTGTTAAAGATCAAGATTGCGTTGGAATGCGACTTAAATATTGATTATAAAGAACTTACAATGAAAAATGAAGTTTACACCATTGGAGGAATTAAAAACCACATTGTAGGTCACACTACCCGTCTCGATGACATGACTTGGTCTCTTTTCTTATGTAAAATTTGGTATGATTTTTATGTGCACCATTATGATAATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

249

Amino Acids

28.19

Weight (kDa)

8.62

Isoelectric Point (pI)

37.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35660
malus_domestica	MD17G1152300.v1.1
prunus_persica	Prupe.3G032500_v2.0.a1
pyrus_communis	pycom17g14560
rosa_chinensis	RchiOBHm_Chr2g0147641
rosa_laevigata	RLG00000020266
rosa_multiflora	Rmu_co8473547.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099430
rosa_rugosa	Rorug02G0400500
rosa_samantha	Rh2AG457900 Rh2CG445300
rosa_wichuraiana	Rw2G037430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	594
AcsI	RAATTY	3 cut(s)	19, 184, 705
AcuI	CTGAAG	1 cut(s)	359
AflIII	ACRYGT	1 cut(s)	486
AgsI	TTSAA	5 cut(s)	67, 182, 228, 317, 477
AjiI	CACGTC	1 cut(s)	311
AluBI	AGCT	3 cut(s)	192, 208, 521
AluI	AGCT	3 cut(s)	192, 208, 521
Alw21I	GWGCWC	2 cut(s)	523, 729
Alw26I	GTCTC	2 cut(s)	674, 693
Alw44I	GTGCAC	1 cut(s)	725
ApaLI	GTGCAC	1 cut(s)	725
ApeKI	GCWGC	1 cut(s)	390
ApoI	RAATTY	3 cut(s)	19, 184, 705
AsuC2I	CCSGG	1 cut(s)	366
AsuHPI	GGTGA	1 cut(s)	515
AsuII	TTCGAA	1 cut(s)	405
BaeGI	GKGCMC	1 cut(s)	729
BanII	GRGCYC	1 cut(s)	523
BbsI	GAAGAC	1 cut(s)	320
Bbv12I	GWGCWC	2 cut(s)	523, 729
BbvI	GCAGC	1 cut(s)	402
BccI	CCATC	2 cut(s)	329, 464
BceAI	ACGGC	1 cut(s)	36
BcgI	CGANNNNNNTGC	2 cut(s)	30, 64
BcnI	CCSGG	1 cut(s)	366
BcoDI	GTCTC	2 cut(s)	674, 693
BfaI	CTAG	1 cut(s)	411
BisI	GCNGC	1 cut(s)	391
BlsI	GCNGC	1 cut(s)	392
Bme1390I	CCNGG	1 cut(s)	366
BmgBI	CACGTC	1 cut(s)	311
BmiI	GGNNCC	1 cut(s)	352
BmrFI	CCNGG	1 cut(s)	366
BmsI	GCATC	1 cut(s)	467
BpiI	GAAGAC	1 cut(s)	320
Bpu14I	TTCGAA	1 cut(s)	405
BpuMI	CCSGG	1 cut(s)	366
BsaI	GGTCTC	1 cut(s)	693
Bse1I	ACTGG	1 cut(s)	167
Bse3DI	GCAATG	1 cut(s)	400
BseGI	GGATG	1 cut(s)	10
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	1 cut(s)	167
BseRI	GAGGAG	2 cut(s)	77, 80
BseSI	GKGCMC	1 cut(s)	729
BseXI	GCAGC	1 cut(s)	402
BsiHKAI	GWGCWC	2 cut(s)	523, 729
BsiSI	CCGG	1 cut(s)	366
BsmAI	GTCTC	2 cut(s)	674, 693
BsmBI	CGTCTC	1 cut(s)	674
BsmI	GAATGC	2 cut(s)	271, 578
Bso31I	GGTCTC	1 cut(s)	693
Bsp119I	TTCGAA	1 cut(s)	405
Bsp1286I	GDGCHC	2 cut(s)	523, 729
Bsp143I	GATC	2 cut(s)	71, 555
BspCNI	CTCAG	1 cut(s)	315
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	352
BspT104I	TTCGAA	1 cut(s)	405
BspTNI	GGTCTC	1 cut(s)	693
BsrDI	GCAATG	1 cut(s)	400
BsrI	ACTGG	1 cut(s)	167
BssMI	GATC	2 cut(s)	71, 555
BstBI	TTCGAA	1 cut(s)	405
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	2 cut(s)	103, 323
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	74, 558
BstMAI	GTCTC	2 cut(s)	674, 693
BstMBI	GATC	2 cut(s)	71, 555
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstNSI	RCATGY	2 cut(s)	60, 490
BstSCI	CCNGG	1 cut(s)	364
BstSLI	GKGCMC	1 cut(s)	729
BstV1I	GCAGC	1 cut(s)	402
BstV2I	GAAGAC	1 cut(s)	320
BtgZI	GCGATG	1 cut(s)	525
BtrI	CACGTC	1 cut(s)	311
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	381
CciI	TCATGA	1 cut(s)	331
CviAII	CATG	6 cut(s)	57, 75, 332, 426, 487, 679
CviJI	RGCY	8 cut(s)	157, 166, 192, 208, 303, 379, 441, 521
CviKI_1	RGCY	8 cut(s)	157, 166, 192, 208, 303, 379, 441, 521
DdeI	CTNAG	2 cut(s)	103, 323
DpnI	GATC	2 cut(s)	73, 557
DpnII	GATC	2 cut(s)	71, 555
Ecl136II	GAGCTC	1 cut(s)	521
Eco24I	GRGCYC	1 cut(s)	523
Eco31I	GGTCTC	1 cut(s)	693
Eco53kI	GAGCTC	1 cut(s)	521
Eco57I	CTGAAG	1 cut(s)	359
EcoICRI	GAGCTC	1 cut(s)	521
EcoT38I	GRGCYC	1 cut(s)	523
Esp3I	CGTCTC	1 cut(s)	674
FaeI	CATG	6 cut(s)	60, 78, 335, 429, 490, 682
FatI	CATG	6 cut(s)	56, 74, 331, 425, 486, 678
Fnu4HI	GCNGC	1 cut(s)	391
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	523
Fsp4HI	GCNGC	1 cut(s)	391
FspBI	CTAG	1 cut(s)	411
GluI	GCNGC	1 cut(s)	391
HapII	CCGG	1 cut(s)	366
Hin1II	CATG	6 cut(s)	60, 78, 335, 429, 490, 682
HindIII	AAGCTT	1 cut(s)	190
HinfI	GANTC	5 cut(s)	197, 291, 325, 361, 415
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	1 cut(s)	515
Hpy166II	GTNNAC	2 cut(s)	622, 727
Hpy188I	TCNGA	5 cut(s)	25, 41, 324, 360, 495
Hpy188III	TCNNGA	4 cut(s)	314, 332, 559, 671
Hpy8I	GTNNAC	2 cut(s)	622, 727
HpyAV	CCTTC	3 cut(s)	188, 315, 383
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	4 cut(s)	56, 452, 466, 727
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	2 cut(s)	103, 323
HpySE526I	ACGT	1 cut(s)	310
Hsp92II	CATG	6 cut(s)	60, 78, 335, 429, 490, 682
Kzo9I	GATC	2 cut(s)	71, 555
LmnI	GCTCC	1 cut(s)	518
LpnPI	CCDG	9 cut(s)	173, 180, 245, 275, 280, 379, 393, 455, 539
Lsp1109I	GCAGC	1 cut(s)	402
LweI	GCATC	1 cut(s)	467
MaeI	CTAG	1 cut(s)	411
MaeII	ACGT	1 cut(s)	310
MaeIII	GTNAC	1 cut(s)	656
MalI	GATC	2 cut(s)	73, 557
MboI	GATC	2 cut(s)	71, 555
MboII	GAAGA	3 cut(s)	136, 320, 493
MhlI	GDGCHC	2 cut(s)	523, 729
MluCI	AATT	5 cut(s)	19, 184, 543, 636, 705
MlyI	GAGTC	1 cut(s)	334
MmeI	TCCRAC	2 cut(s)	496, 549
MnlI	CCTC	4 cut(s)	98, 101, 448, 626
MseI	TTAA	5 cut(s)	152, 188, 551, 581, 639
MslI	CAYNNNNRTG	1 cut(s)	732
MspI	CCGG	1 cut(s)	366
MspR9I	CCNGG	1 cut(s)	366
Mva1269I	GAATGC	2 cut(s)	271, 578
MwoI	GCNNNNNNNGC	1 cut(s)	163
NciI	CCSGG	1 cut(s)	366
NdeII	GATC	2 cut(s)	71, 555
NlaIII	CATG	6 cut(s)	60, 78, 335, 429, 490, 682
NlaIV	GGNNCC	1 cut(s)	352
NmuCI	GTSAC	1 cut(s)	656
NspI	RCATGY	2 cut(s)	60, 490
NspV	TTCGAA	1 cut(s)	405
PagI	TCATGA	1 cut(s)	331
PciI	ACATGT	1 cut(s)	486
PctI	GAATGC	2 cut(s)	271, 578
PfeI	GAWTC	4 cut(s)	197, 291, 361, 415
PflFI	GACNNNGTC	1 cut(s)	685
PkrI	GCNGC	1 cut(s)	392
PleI	GAGTC	1 cut(s)	333
PpsI	GAGTC	1 cut(s)	333
PscI	ACATGT	1 cut(s)	486
PsiI	TTATAA	1 cut(s)	594
Psp124BI	GAGCTC	1 cut(s)	523
PspN4I	GGNNCC	1 cut(s)	352
PsyI	GACNNNGTC	1 cut(s)	685
RseI	CAYNNNNRTG	1 cut(s)	732
SacI	GAGCTC	1 cut(s)	523
SaqAI	TTAA	5 cut(s)	152, 188, 551, 581, 639
SatI	GCNGC	1 cut(s)	391
Sau3AI	GATC	2 cut(s)	71, 555
SchI	GAGTC	1 cut(s)	334
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	2 cut(s)	523, 729
SetI	ASST	6 cut(s)	194, 210, 313, 523, 528, 658
SfaNI	GCATC	1 cut(s)	467
SfuI	TTCGAA	1 cut(s)	405
SmiMI	CAYNNNNRTG	1 cut(s)	732
Sse9I	AATT	5 cut(s)	19, 184, 543, 636, 705
SspI	AATATT	1 cut(s)	586
SspMI	CTAG	1 cut(s)	411
SstI	GAGCTC	1 cut(s)	523
StyD4I	CCNGG	1 cut(s)	364
TaiI	ACGT	1 cut(s)	313
TaqI	TCGA	2 cut(s)	405, 672
TasI	AATT	5 cut(s)	19, 184, 543, 636, 705
TfiI	GAWTC	4 cut(s)	197, 291, 361, 415
Tru1I	TTAA	5 cut(s)	152, 188, 551, 581, 639
Tru9I	TTAA	5 cut(s)	152, 188, 551, 581, 639
TseFI	GTSAC	1 cut(s)	656
TseI	GCWGC	1 cut(s)	390
Tsp45I	GTSAC	1 cut(s)	656
TspDTI	ATGAA	5 cut(s)	231, 320, 527, 623, 630
Tth111I	GACNNNGTC	1 cut(s)	685
VneI	GTGCAC	1 cut(s)	725
XapI	RAATTY	3 cut(s)	19, 184, 705
XceI	RCATGY	2 cut(s)	60, 490
XspI	CTAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.