Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8473547.1

Orthogroup ID

OG0017697

Physical Location & Seq

Genomic Coordinates Reverse (-)

793 .. 1487

Gene Structure 695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8473547.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgaagccccaaaagccagttttttccctccaagatgtaagtgtggattcgtataaactcaatgcctattctggttcgaccctgtttgtttcatcagtaatcacattgaccctgaatgctcaaaatcataacaaaattggcatctggtatactccttcccacctagaagctctttatgatggcctgcctataggaacaattcagattcccgggtttcttcaacctgctcatagtagtaatgtgactatgcagacaaggcttttatttccatgtgtgaatgccagccagattataggagaggcttcaattcaagaagattccaggaaaaatatgtttcagatgaaaatagtaggtgatgttggggctcacctgctggtatttcacataatccttttaaagatcaaggttggtctggagtgtgacataaatattgattacgaagagctgaccaacagaaacgaagttcacaacacgactggatcttttccggcatcttttcctaccaacacccagtccttgttcatgaactgcacatgggctttgtacatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

183

Amino Acids

20.41

Weight (kDa)

6.03

Isoelectric Point (pI)

39.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35660
malus_domestica	MD17G1152300.v1.1
prunus_persica	Prupe.3G032500_v2.0.a1
pyrus_communis	pycom17g14560
rosa_chinensis	RchiOBHm_Chr2g0147641
rosa_laevigata	RLG00000020266
rosa_multiflora	Rmu_co8473547.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099430
rosa_rugosa	Rorug02G0400500
rosa_samantha	Rh2AG457900 Rh2CG445300
rosa_wichuraiana	Rw2G037430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	378
Acc36I	ACCTGC	2 cut(s)	232, 378
AccI	GTMKAC	1 cut(s)	149
AclWI	GGATC	1 cut(s)	487
AfaI	GTAC	1 cut(s)	545
AflIII	ACRYGT	1 cut(s)	546
AgsI	TTSAA	3 cut(s)	221, 306, 311
AjnI	CCWGG	1 cut(s)	320
AluBI	AGCT	2 cut(s)	170, 445
AluI	AGCT	2 cut(s)	170, 445
AlwI	GGATC	1 cut(s)	487
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	1 cut(s)	181
AsuC2I	CCSGG	2 cut(s)	210, 211
AsuHPI	GGTGA	2 cut(s)	359, 365
AvaI	CYCGRG	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	367
BccI	CCATC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	322
BcnI	CCSGG	2 cut(s)	210, 211
BfaI	CTAG	1 cut(s)	164
BfmI	CTRYAG	1 cut(s)	189
BfuAI	ACCTGC	2 cut(s)	232, 378
Bme1390I	CCNGG	3 cut(s)	210, 211, 322
BmeT110I	CYCGRG	1 cut(s)	209
BmrFI	CCNGG	3 cut(s)	210, 211, 322
BmrI	ACTGGG	1 cut(s)	505
BmsI	GCATC	2 cut(s)	150, 500
BmuI	ACTGGG	1 cut(s)	505
BpmI	CTGGAG	1 cut(s)	434
BpuMI	CCSGG	2 cut(s)	210, 211
BsaJI	CCNNGG	1 cut(s)	209
Bse1I	ACTGG	3 cut(s)	17, 481, 511
BseBI	CCWGG	1 cut(s)	322
BseDI	CCNNGG	1 cut(s)	209
BseNI	ACTGG	3 cut(s)	17, 481, 511
BsgI	GTGCAG	1 cut(s)	514
BshFI	GGCC	1 cut(s)	183
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	2 cut(s)	210, 488
BsmI	GAATGC	2 cut(s)	121, 283
BsnI	GGCC	1 cut(s)	183
BsoBI	CYCGRG	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp1407I	TGTACA	1 cut(s)	543
Bsp143I	GATC	2 cut(s)	399, 479
BspANI	GGCC	1 cut(s)	183
BspHI	TCATGA	1 cut(s)	522
BspMI	ACCTGC	2 cut(s)	232, 378
BspPI	GGATC	1 cut(s)	487
BspQI	GCTCTTC	1 cut(s)	435
BsrGI	TGTACA	1 cut(s)	543
BsrI	ACTGG	3 cut(s)	17, 481, 511
BssECI	CCNNGG	1 cut(s)	209
BssMI	GATC	2 cut(s)	399, 479
BssNAI	GTATAC	1 cut(s)	150
Bst1107I	GTATAC	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	322
Bst6I	CTCTTC	1 cut(s)	435
BstAUI	TGTACA	1 cut(s)	543
BstC8I	GCNNGC	2 cut(s)	185, 283
BstKTI	GATC	2 cut(s)	402, 482
BstMBI	GATC	2 cut(s)	399, 479
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 256
BstNI	CCWGG	1 cut(s)	322
BstNSI	RCATGY	1 cut(s)	550
BstSCI	CCNGG	3 cut(s)	208, 209, 320
BstSFI	CTRYAG	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	479
BstYI	RGATCY	1 cut(s)	479
BstZ17I	GTATAC	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	183
BveI	ACCTGC	2 cut(s)	232, 378
Cac8I	GCNNGC	2 cut(s)	185, 283
CciI	TCATGA	1 cut(s)	522
Cfr9I	CCCGGG	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	544
CviAII	CATG	4 cut(s)	270, 523, 534, 547
CviQI	GTAC	1 cut(s)	544
DpnI	GATC	2 cut(s)	401, 481
DpnII	GATC	2 cut(s)	399, 479
DraI	TTTAAA	1 cut(s)	396
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Eco24I	GRGCYC	1 cut(s)	367
Eco88I	CYCGRG	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	320
EcoT38I	GRGCYC	1 cut(s)	367
FaeI	CATG	4 cut(s)	273, 526, 537, 550
FatI	CATG	4 cut(s)	269, 522, 533, 546
FblI	GTMKAC	1 cut(s)	149
FriOI	GRGCYC	1 cut(s)	367
FspBI	CTAG	1 cut(s)	164
GsuI	CTGGAG	1 cut(s)	434
HaeIII	GGCC	1 cut(s)	183
HapII	CCGG	2 cut(s)	210, 488
Hin1II	CATG	4 cut(s)	273, 526, 537, 550
HinfI	GANTC	3 cut(s)	47, 205, 317
HpaII	CCGG	2 cut(s)	210, 488
HphI	GGTGA	2 cut(s)	359, 365
Hpy166II	GTNNAC	2 cut(s)	150, 466
Hpy188I	TCNGA	2 cut(s)	204, 339
Hpy188III	TCNNGA	3 cut(s)	311, 413, 523
Hpy8I	GTNNAC	2 cut(s)	150, 466
HpyAV	CCTTC	1 cut(s)	165
HpyCH4V	TGCA	2 cut(s)	250, 531
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 256
Hsp92II	CATG	4 cut(s)	273, 526, 537, 550
Kzo9I	GATC	2 cut(s)	399, 479
LguI	GCTCTTC	1 cut(s)	435
LweI	GCATC	2 cut(s)	150, 500
MaeI	CTAG	1 cut(s)	164
MaeIII	GTNAC	2 cut(s)	241, 419
MalI	GATC	2 cut(s)	401, 481
MboI	GATC	2 cut(s)	399, 479
MboII	GAAGA	3 cut(s)	209, 326, 452
MflI	RGATCY	1 cut(s)	479
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	3 cut(s)	135, 198, 306
MnlI	CCTC	2 cut(s)	38, 292
MseI	TTAA	1 cut(s)	395
MspI	CCGG	2 cut(s)	210, 488
MspR9I	CCNGG	3 cut(s)	210, 211, 322
Mva1269I	GAATGC	2 cut(s)	121, 283
MvaI	CCWGG	1 cut(s)	322
MwoI	GCNNNNNNNGC	2 cut(s)	13, 256
NciI	CCSGG	2 cut(s)	210, 211
NdeII	GATC	2 cut(s)	399, 479
NlaIII	CATG	4 cut(s)	273, 526, 537, 550
NmuCI	GTSAC	2 cut(s)	241, 419
NspI	RCATGY	1 cut(s)	550
PagI	TCATGA	1 cut(s)	522
PaqCI	CACCTGC	1 cut(s)	378
PciI	ACATGT	1 cut(s)	546
PciSI	GCTCTTC	1 cut(s)	435
PctI	GAATGC	2 cut(s)	121, 283
PfeI	GAWTC	3 cut(s)	47, 205, 317
PfoI	TCCNGGA	1 cut(s)	320
PscI	ACATGT	1 cut(s)	546
Psp6I	CCWGG	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	320
PsuI	RGATCY	1 cut(s)	479
RsaI	GTAC	1 cut(s)	545
RsaNI	GTAC	1 cut(s)	544
SapI	GCTCTTC	1 cut(s)	435
SaqAI	TTAA	1 cut(s)	395
Sau3AI	GATC	2 cut(s)	399, 479
ScrFI	CCNGG	3 cut(s)	210, 211, 322
SduI	GDGCHC	1 cut(s)	367
SetI	ASST	7 cut(s)	165, 172, 226, 355, 372, 408, 447
SfaNI	GCATC	2 cut(s)	150, 500
SfcI	CTRYAG	1 cut(s)	189
SmaI	CCCGGG	1 cut(s)	211
Sse9I	AATT	3 cut(s)	135, 198, 306
SspI	AATATT	1 cut(s)	430
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	3 cut(s)	208, 209, 320
TaqI	TCGA	1 cut(s)	77
TasI	AATT	3 cut(s)	135, 198, 306
TatI	WGTACW	1 cut(s)	543
TfiI	GAWTC	3 cut(s)	47, 205, 317
Tru1I	TTAA	1 cut(s)	395
Tru9I	TTAA	1 cut(s)	395
TseFI	GTSAC	2 cut(s)	241, 419
Tsp45I	GTSAC	2 cut(s)	241, 419
TspDTI	ATGAA	5 cut(s)	17, 81, 356, 511, 539
TspMI	CCCGGG	1 cut(s)	209
XceI	RCATGY	1 cut(s)	550
XmaI	CCCGGG	1 cut(s)	209
XmiI	GTMKAC	1 cut(s)	149
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.