Rh2AG457900

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0017697
Physical Location & Seq
Reverse (-)
67324884 .. 67325734
851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG457900.1

Sequence Viewer

Length: 708 bp
ATGGATGTCATCAGTTCATTCCGAAATTCGGAACACTCGTGTTGCCTAAAGCTTTGCCATGCATATTCTTTCAAAAGATCCTGTTTATTTCTCCTCCTCTTCCTTCTTGTGCCAGTTGTTTTTCTGGGTGTAGCTACATTGATCATAATCTTCGTCATGAAGCCCCAAAAGCCAGTTTTTTCCCTCCAAGATGTAAGTGTGGATTCGTATAAGCTCAATGCCTATTCTGGTTCGACCCTGTTTGTTTCATCAGTAATCACATTGACCCTGAATGCTCAAAATCATAACAAAATTGGCATCTGGTATACTCCTTCCCACCTAGAAGCTCTTTATGATGGACTGCCTATAGGAACAATTCGGATTCCCGGGTTTCTTCAACCTGCTCATAGTAGTAATGTGACTATGCAGACAAGGCTTTTATTTCCATGTGTGAATGCCAGCCAGATTATAGCAGAGGCTTCAATTCAAGAAGATTCCAGGAAAAATATGTTTCAGATGAAAATAGTAGGTGATGTTGGAGCTCACCTGCTGGTATTTCACATAATCCTTTTAAAGATCAAGGTTGGTCTGGAGTGTGACATAAATATTGATTACGAAGAGCTGACCAACAGAAACGAAGTTCACAGCAGGACTGGATCTTTTCCGGCATCTTTTCCTACCAACACCCAGTCCTTGTTCATGAACTGCACATGGGCTTTGTACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

235

Amino Acids

26.37

Weight (kDa)

7.64

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017697)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35660
malus_domestica MD17G1152300.v1.1
prunus_persica Prupe.3G032500_v2.0.a1
pyrus_communis pycom17g14560
rosa_chinensis RchiOBHm_Chr2g0147641
rosa_laevigata RLG00000020266
rosa_multiflora Rmu_co8473547.1_g000001
rosa_roxburghii Rroxscaffold_2G00099430
rosa_rugosa Rorug02G0400500
rosa_samantha Rh2AG457900 Rh2CG445300
rosa_wichuraiana Rw2G037430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 534
Acc36I ACCTGC 2 cut(s) 388, 534
AccI GTMKAC 1 cut(s) 305
AclWI GGATC 2 cut(s) 72, 643
AcsI RAATTY 1 cut(s) 25
AfaI GTAC 1 cut(s) 701
AfiI CCNNNNNNNGG 1 cut(s) 28
AflIII ACRYGT 1 cut(s) 702
AgsI TTSAA 4 cut(s) 73, 377, 462, 467
AjnI CCWGG 1 cut(s) 476
AluBI AGCT 6 cut(s) 52, 134, 214, 326, 521, 601
AluI AGCT 6 cut(s) 52, 134, 214, 326, 521, 601
Alw21I GWGCWC 1 cut(s) 523
AlwI GGATC 2 cut(s) 72, 643
Ama87I CYCGRG 1 cut(s) 365
ApoI RAATTY 1 cut(s) 25
AsuC2I CCSGG 2 cut(s) 366, 367
AsuHPI GGTGA 2 cut(s) 515, 521
AvaI CYCGRG 1 cut(s) 365
BanII GRGCYC 1 cut(s) 523
BauI CACGAG 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 523
BccI CCATC 1 cut(s) 329
BciT130I CCWGG 1 cut(s) 478
BclI TGATCA 1 cut(s) 141
BcnI CCSGG 2 cut(s) 366, 367
BfaI CTAG 1 cut(s) 320
BfmI CTRYAG 1 cut(s) 345
BfuAI ACCTGC 2 cut(s) 388, 534
Bme1390I CCNGG 3 cut(s) 366, 367, 478
BmeT110I CYCGRG 1 cut(s) 365
BmrFI CCNGG 3 cut(s) 366, 367, 478
BmrI ACTGGG 1 cut(s) 661
BmsI GCATC 2 cut(s) 306, 656
BmuI ACTGGG 1 cut(s) 661
BpmI CTGGAG 1 cut(s) 590
BpuMI CCSGG 2 cut(s) 366, 367
BsaBI GATNNNNATC 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 365
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse1I ACTGG 4 cut(s) 113, 173, 637, 667
Bse8I GATNNNNATC 1 cut(s) 146
BseBI CCWGG 1 cut(s) 478
BseDI CCNNGG 1 cut(s) 365
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 146
BseLI CCNNNNNNNGG 1 cut(s) 28
BseNI ACTGG 4 cut(s) 113, 173, 637, 667
BseRI GAGGAG 2 cut(s) 83, 86
BsgI GTGCAG 1 cut(s) 670
BsiHKAI GWGCWC 1 cut(s) 523
BsiHKCI CYCGRG 1 cut(s) 365
BsiSI CCGG 2 cut(s) 366, 644
BslI CCNNNNNNNGG 1 cut(s) 28
BsmI GAATGC 2 cut(s) 277, 439
BsoBI CYCGRG 1 cut(s) 365
Bsp1286I GDGCHC 1 cut(s) 523
Bsp1407I TGTACA 1 cut(s) 699
Bsp143I GATC 4 cut(s) 77, 141, 555, 635
BspHI TCATGA 2 cut(s) 156, 678
BspMI ACCTGC 2 cut(s) 388, 534
BspPI GGATC 2 cut(s) 72, 643
BspQI GCTCTTC 1 cut(s) 591
BsrGI TGTACA 1 cut(s) 699
BsrI ACTGG 4 cut(s) 113, 173, 637, 667
BssECI CCNNGG 1 cut(s) 365
BssMI GATC 4 cut(s) 77, 141, 555, 635
BssNAI GTATAC 1 cut(s) 306
BssSI CACGAG 1 cut(s) 37
Bst1107I GTATAC 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 478
Bst6I CTCTTC 2 cut(s) 104, 591
BstAUI TGTACA 1 cut(s) 699
BstC8I GCNNGC 1 cut(s) 439
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 4 cut(s) 80, 144, 558, 638
BstMBI GATC 4 cut(s) 77, 141, 555, 635
BstMWI GCNNNNNNNGC 2 cut(s) 169, 412
BstNI CCWGG 1 cut(s) 478
BstNSI RCATGY 1 cut(s) 706
BstSCI CCNGG 3 cut(s) 364, 365, 476
BstSFI CTRYAG 1 cut(s) 345
BstX2I RGATCY 2 cut(s) 77, 635
BstYI RGATCY 2 cut(s) 77, 635
BstZ17I GTATAC 1 cut(s) 306
BtsCI GGATG 1 cut(s) 10
BveI ACCTGC 2 cut(s) 388, 534
Cac8I GCNNGC 1 cut(s) 439
CciI TCATGA 2 cut(s) 156, 678
Cfr9I CCCGGG 1 cut(s) 365
Csp6I GTAC 1 cut(s) 700
CviAII CATG 6 cut(s) 59, 157, 426, 679, 690, 703
CviQI GTAC 1 cut(s) 700
DpnI GATC 4 cut(s) 79, 143, 557, 637
DpnII GATC 4 cut(s) 77, 141, 555, 635
DraI TTTAAA 1 cut(s) 552
Eam1104I CTCTTC 2 cut(s) 104, 591
EarI CTCTTC 2 cut(s) 104, 591
Ecl136II GAGCTC 1 cut(s) 521
Eco24I GRGCYC 1 cut(s) 523
Eco53kI GAGCTC 1 cut(s) 521
Eco88I CYCGRG 1 cut(s) 365
EcoICRI GAGCTC 1 cut(s) 521
EcoRII CCWGG 1 cut(s) 476
EcoT22I ATGCAT 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 523
FaeI CATG 6 cut(s) 62, 160, 429, 682, 693, 706
FatI CATG 6 cut(s) 58, 156, 425, 678, 689, 702
FbaI TGATCA 1 cut(s) 141
FblI GTMKAC 1 cut(s) 305
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 523
FspBI CTAG 1 cut(s) 320
GsuI CTGGAG 1 cut(s) 590
HapII CCGG 2 cut(s) 366, 644
Hin1II CATG 6 cut(s) 62, 160, 429, 682, 693, 706
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 3 cut(s) 203, 361, 473
HpaII CCGG 2 cut(s) 366, 644
HphI GGTGA 2 cut(s) 515, 521
Hpy166II GTNNAC 2 cut(s) 306, 622
Hpy188I TCNGA 4 cut(s) 23, 31, 360, 495
Hpy188III TCNNGA 4 cut(s) 157, 467, 569, 679
Hpy8I GTNNAC 2 cut(s) 306, 622
HpyAV CCTTC 2 cut(s) 113, 321
HpyCH4V TGCA 3 cut(s) 62, 406, 687
HpyF10VI GCNNNNNNNGC 2 cut(s) 169, 412
Hsp92II CATG 6 cut(s) 62, 160, 429, 682, 693, 706
Ksp22I TGATCA 1 cut(s) 141
Kzo9I GATC 4 cut(s) 77, 141, 555, 635
LguI GCTCTTC 1 cut(s) 591
LmnI GCTCC 1 cut(s) 518
LweI GCATC 2 cut(s) 306, 656
MaeI CTAG 1 cut(s) 320
MaeIII GTNAC 2 cut(s) 397, 575
MalI GATC 4 cut(s) 79, 143, 557, 637
MboI GATC 4 cut(s) 77, 141, 555, 635
MboII GAAGA 5 cut(s) 91, 142, 365, 482, 608
MflI RGATCY 2 cut(s) 77, 635
MhlI GDGCHC 1 cut(s) 523
MluCI AATT 4 cut(s) 25, 291, 354, 462
MmeI TCCRAC 1 cut(s) 496
MnlI CCTC 4 cut(s) 104, 107, 194, 448
Mph1103I ATGCAT 1 cut(s) 64
MseI TTAA 1 cut(s) 551
MspI CCGG 2 cut(s) 366, 644
MspR9I CCNGG 3 cut(s) 366, 367, 478
Mva1269I GAATGC 2 cut(s) 277, 439
MvaI CCWGG 1 cut(s) 478
MwoI GCNNNNNNNGC 2 cut(s) 169, 412
NciI CCSGG 2 cut(s) 366, 367
NdeII GATC 4 cut(s) 77, 141, 555, 635
NlaIII CATG 6 cut(s) 62, 160, 429, 682, 693, 706
NmuCI GTSAC 2 cut(s) 397, 575
NsiI ATGCAT 1 cut(s) 64
NspI RCATGY 1 cut(s) 706
PagI TCATGA 2 cut(s) 156, 678
PaqCI CACCTGC 1 cut(s) 534
PciI ACATGT 1 cut(s) 702
PciSI GCTCTTC 1 cut(s) 591
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PctI GAATGC 2 cut(s) 277, 439
PfeI GAWTC 3 cut(s) 203, 361, 473
PfoI TCCNGGA 1 cut(s) 476
PscI ACATGT 1 cut(s) 702
Psp124BI GAGCTC 1 cut(s) 523
Psp6I CCWGG 1 cut(s) 476
PspGI CCWGG 1 cut(s) 476
PsuI RGATCY 2 cut(s) 77, 635
RsaI GTAC 1 cut(s) 701
RsaNI GTAC 1 cut(s) 700
SacI GAGCTC 1 cut(s) 523
SapI GCTCTTC 1 cut(s) 591
SaqAI TTAA 1 cut(s) 551
Sau3AI GATC 4 cut(s) 77, 141, 555, 635
ScrFI CCNGG 3 cut(s) 366, 367, 478
SduI GDGCHC 1 cut(s) 523
SfaNI GCATC 2 cut(s) 306, 656
SfcI CTRYAG 1 cut(s) 345
SmaI CCCGGG 1 cut(s) 367
Sse9I AATT 4 cut(s) 25, 291, 354, 462
SspI AATATT 1 cut(s) 586
SspMI CTAG 1 cut(s) 320
SstI GAGCTC 1 cut(s) 523
StyD4I CCNGG 3 cut(s) 364, 365, 476
TaqI TCGA 1 cut(s) 233
TasI AATT 4 cut(s) 25, 291, 354, 462
TatI WGTACW 1 cut(s) 699
TfiI GAWTC 3 cut(s) 203, 361, 473
Tru1I TTAA 1 cut(s) 551
Tru9I TTAA 1 cut(s) 551
TseFI GTSAC 2 cut(s) 397, 575
Tsp45I GTSAC 2 cut(s) 397, 575
TspDTI ATGAA 6 cut(s) 6, 173, 237, 512, 667, 695
TspMI CCCGGG 1 cut(s) 365
XapI RAATTY 1 cut(s) 25
XceI RCATGY 1 cut(s) 706
XmaI CCCGGG 1 cut(s) 365
XmiI GTMKAC 1 cut(s) 305
XspI CTAG 1 cut(s) 320
Zsp2I ATGCAT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.