Rroxscaffold_2G00099430

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017697
Physical Location & Seq
Forward (+)
21142659 .. 21143506
848 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00099430.1

Sequence Viewer

Length: 705 bp
ATGGATGTCATCAGTTCATTCCGAAATTCGGAACACTCGTGTTGCCTAAAGCTTTGCCATGCATATTCTTTCAAAAGATCCTGTTTATTTCTCCTCCTCTTCCTTCTTGTGCCAGTTGTTTTTCTGGGTGTAGCTACATTGATCATAATCTTCGTCACGAAGCCCCAAAAGCCAGTTTTTTCCCTCCAAGATGTAAGTGTGGATTCGTATAAGCTCAATGCCTATTCTGGTTCGACCCTGTTTGTTTCATCAGTAATCACATTGACCCTGAATGCTCAAAATCATAACAAAATTGGCATCTGGTATACTCCTTCCCACCTAGAAGCTCTTTATGATGGACTGCCTATAGGAACAATTCGGATTCCCGGGTTTCTTCAACCTTCTCATAGTAATGTGACTATGCAGACAAGGCTTTTATTTCCATGTGTGAATGCCAGCCAGATTATAGGAGAGGCTTCAATGCAAGAAGATTCCAGAAAAAATATGTTTCAGATGAAAATAGTAGGTGATGTTGGAGCTCACCTGCTGGTATTTCACATAATCCTTTTAAAGATCAAGGTTGGTCTGGAGTGTGACATAAATATTGATTACAAAGAGCTGACCAACAGAAACGAAGTTCACAACACGATTGGATCTTTTCCGGCATCTTTTCCTACCGACACCCAGACCTTCTTCATGAACTGCACATGGGCTTTGTACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

234

Amino Acids

26.31

Weight (kDa)

7.64

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017697)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35660
malus_domestica MD17G1152300.v1.1
prunus_persica Prupe.3G032500_v2.0.a1
pyrus_communis pycom17g14560
rosa_chinensis RchiOBHm_Chr2g0147641
rosa_laevigata RLG00000020266
rosa_multiflora Rmu_co8473547.1_g000001
rosa_roxburghii Rroxscaffold_2G00099430
rosa_rugosa Rorug02G0400500
rosa_samantha Rh2AG457900 Rh2CG445300
rosa_wichuraiana Rw2G037430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 531
Acc36I ACCTGC 1 cut(s) 531
AccI GTMKAC 1 cut(s) 305
AclWI GGATC 2 cut(s) 72, 640
AcsI RAATTY 1 cut(s) 25
AfaI GTAC 1 cut(s) 698
AfiI CCNNNNNNNGG 1 cut(s) 28
AflIII ACRYGT 1 cut(s) 699
AgsI TTSAA 3 cut(s) 73, 377, 459
AluBI AGCT 6 cut(s) 52, 134, 214, 326, 518, 598
AluI AGCT 6 cut(s) 52, 134, 214, 326, 518, 598
Alw21I GWGCWC 1 cut(s) 520
AlwI GGATC 2 cut(s) 72, 640
Ama87I CYCGRG 1 cut(s) 365
ApoI RAATTY 1 cut(s) 25
AsuC2I CCSGG 2 cut(s) 366, 367
AsuHPI GGTGA 2 cut(s) 512, 518
AvaI CYCGRG 1 cut(s) 365
BanII GRGCYC 1 cut(s) 520
BauI CACGAG 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 520
BccI CCATC 1 cut(s) 329
BclI TGATCA 1 cut(s) 141
BcnI CCSGG 2 cut(s) 366, 367
BfaI CTAG 1 cut(s) 320
BfmI CTRYAG 1 cut(s) 345
BfuAI ACCTGC 1 cut(s) 531
Bme1390I CCNGG 2 cut(s) 366, 367
BmeT110I CYCGRG 1 cut(s) 365
BmrFI CCNGG 2 cut(s) 366, 367
BmsI GCATC 2 cut(s) 306, 653
BpmI CTGGAG 1 cut(s) 587
BpuMI CCSGG 2 cut(s) 366, 367
BsaBI GATNNNNATC 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 365
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse1I ACTGG 2 cut(s) 113, 173
Bse8I GATNNNNATC 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 365
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 146
BseLI CCNNNNNNNGG 1 cut(s) 28
BseNI ACTGG 2 cut(s) 113, 173
BseRI GAGGAG 2 cut(s) 83, 86
BsgI GTGCAG 1 cut(s) 667
BsiHKAI GWGCWC 1 cut(s) 520
BsiHKCI CYCGRG 1 cut(s) 365
BsiSI CCGG 2 cut(s) 366, 641
BslI CCNNNNNNNGG 1 cut(s) 28
BsmI GAATGC 2 cut(s) 277, 436
BsoBI CYCGRG 1 cut(s) 365
Bsp1286I GDGCHC 1 cut(s) 520
Bsp1407I TGTACA 1 cut(s) 696
Bsp143I GATC 4 cut(s) 77, 141, 552, 632
BspHI TCATGA 1 cut(s) 675
BspMI ACCTGC 1 cut(s) 531
BspPI GGATC 2 cut(s) 72, 640
BsrGI TGTACA 1 cut(s) 696
BsrI ACTGG 2 cut(s) 113, 173
BssECI CCNNGG 1 cut(s) 365
BssMI GATC 4 cut(s) 77, 141, 552, 632
BssNAI GTATAC 1 cut(s) 306
BssSI CACGAG 1 cut(s) 37
Bst1107I GTATAC 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 104
BstAUI TGTACA 1 cut(s) 696
BstC8I GCNNGC 1 cut(s) 436
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 4 cut(s) 80, 144, 555, 635
BstMBI GATC 4 cut(s) 77, 141, 552, 632
BstMWI GCNNNNNNNGC 2 cut(s) 169, 409
BstNSI RCATGY 1 cut(s) 703
BstSCI CCNGG 2 cut(s) 364, 365
BstSFI CTRYAG 1 cut(s) 345
BstX2I RGATCY 2 cut(s) 77, 632
BstYI RGATCY 2 cut(s) 77, 632
BstZ17I GTATAC 1 cut(s) 306
BtsCI GGATG 1 cut(s) 10
BveI ACCTGC 1 cut(s) 531
Cac8I GCNNGC 1 cut(s) 436
CciI TCATGA 1 cut(s) 675
Cfr9I CCCGGG 1 cut(s) 365
Csp6I GTAC 1 cut(s) 697
CviAII CATG 5 cut(s) 59, 423, 676, 687, 700
CviQI GTAC 1 cut(s) 697
DpnI GATC 4 cut(s) 79, 143, 554, 634
DpnII GATC 4 cut(s) 77, 141, 552, 632
DraI TTTAAA 1 cut(s) 549
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
Ecl136II GAGCTC 1 cut(s) 518
Eco24I GRGCYC 1 cut(s) 520
Eco53kI GAGCTC 1 cut(s) 518
Eco88I CYCGRG 1 cut(s) 365
EcoICRI GAGCTC 1 cut(s) 518
EcoT22I ATGCAT 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 520
FaeI CATG 5 cut(s) 62, 426, 679, 690, 703
FatI CATG 5 cut(s) 58, 422, 675, 686, 699
FbaI TGATCA 1 cut(s) 141
FblI GTMKAC 1 cut(s) 305
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 520
FspBI CTAG 1 cut(s) 320
GsuI CTGGAG 1 cut(s) 587
HapII CCGG 2 cut(s) 366, 641
Hin1II CATG 5 cut(s) 62, 426, 679, 690, 703
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 3 cut(s) 203, 361, 470
HpaII CCGG 2 cut(s) 366, 641
HphI GGTGA 2 cut(s) 512, 518
Hpy166II GTNNAC 2 cut(s) 306, 619
Hpy188I TCNGA 4 cut(s) 23, 31, 360, 492
Hpy188III TCNNGA 4 cut(s) 157, 474, 566, 676
Hpy8I GTNNAC 2 cut(s) 306, 619
HpyAV CCTTC 4 cut(s) 113, 321, 390, 679
HpyCH4V TGCA 4 cut(s) 62, 403, 463, 684
HpyF10VI GCNNNNNNNGC 2 cut(s) 169, 409
Hsp92II CATG 5 cut(s) 62, 426, 679, 690, 703
Ksp22I TGATCA 1 cut(s) 141
Kzo9I GATC 4 cut(s) 77, 141, 552, 632
LmnI GCTCC 1 cut(s) 515
LweI GCATC 2 cut(s) 306, 653
MaeI CTAG 1 cut(s) 320
MaeIII GTNAC 3 cut(s) 154, 394, 572
MalI GATC 4 cut(s) 79, 143, 554, 634
MboI GATC 4 cut(s) 77, 141, 552, 632
MboII GAAGA 5 cut(s) 91, 142, 365, 479, 664
MflI RGATCY 2 cut(s) 77, 632
MhlI GDGCHC 1 cut(s) 520
MluCI AATT 3 cut(s) 25, 291, 354
MmeI TCCRAC 1 cut(s) 493
MnlI CCTC 4 cut(s) 104, 107, 194, 445
Mph1103I ATGCAT 1 cut(s) 64
MseI TTAA 1 cut(s) 548
MslI CAYNNNNRTG 1 cut(s) 390
MspI CCGG 2 cut(s) 366, 641
MspR9I CCNGG 2 cut(s) 366, 367
Mva1269I GAATGC 2 cut(s) 277, 436
MwoI GCNNNNNNNGC 2 cut(s) 169, 409
NciI CCSGG 2 cut(s) 366, 367
NdeII GATC 4 cut(s) 77, 141, 552, 632
NlaIII CATG 5 cut(s) 62, 426, 679, 690, 703
NmuCI GTSAC 3 cut(s) 154, 394, 572
NsiI ATGCAT 1 cut(s) 64
NspI RCATGY 1 cut(s) 703
PagI TCATGA 1 cut(s) 675
PaqCI CACCTGC 1 cut(s) 531
PciI ACATGT 1 cut(s) 699
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PctI GAATGC 2 cut(s) 277, 436
PfeI GAWTC 3 cut(s) 203, 361, 470
PscI ACATGT 1 cut(s) 699
Psp124BI GAGCTC 1 cut(s) 520
PsuI RGATCY 2 cut(s) 77, 632
RsaI GTAC 1 cut(s) 698
RsaNI GTAC 1 cut(s) 697
RseI CAYNNNNRTG 1 cut(s) 390
SacI GAGCTC 1 cut(s) 520
SaqAI TTAA 1 cut(s) 548
Sau3AI GATC 4 cut(s) 77, 141, 552, 632
ScrFI CCNGG 2 cut(s) 366, 367
SduI GDGCHC 1 cut(s) 520
SfaNI GCATC 2 cut(s) 306, 653
SfcI CTRYAG 1 cut(s) 345
SmaI CCCGGG 1 cut(s) 367
SmiMI CAYNNNNRTG 1 cut(s) 390
Sse9I AATT 3 cut(s) 25, 291, 354
SspI AATATT 1 cut(s) 583
SspMI CTAG 1 cut(s) 320
SstI GAGCTC 1 cut(s) 520
StyD4I CCNGG 2 cut(s) 364, 365
TaqI TCGA 1 cut(s) 233
TasI AATT 3 cut(s) 25, 291, 354
TatI WGTACW 1 cut(s) 696
TfiI GAWTC 3 cut(s) 203, 361, 470
Tru1I TTAA 1 cut(s) 548
Tru9I TTAA 1 cut(s) 548
TseFI GTSAC 3 cut(s) 154, 394, 572
Tsp45I GTSAC 3 cut(s) 154, 394, 572
TspDTI ATGAA 5 cut(s) 6, 237, 509, 664, 692
TspMI CCCGGG 1 cut(s) 365
XapI RAATTY 1 cut(s) 25
XceI RCATGY 1 cut(s) 703
XmaI CCCGGG 1 cut(s) 365
XmiI GTMKAC 1 cut(s) 305
XspI CTAG 1 cut(s) 320
Zsp2I ATGCAT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.