Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0017697

Physical Location & Seq

Genomic Coordinates Reverse (-)

12122034 .. 12123060

Gene Structure 1027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g14560.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGATGTTTCATCACAAAATTCGGACTATTTGTGTTTCCGAAAACTCTGCCGTGCATATTCTTTCAAAAGATCATGCTTCTTTCTCCTCGTCTTTTTTCTCTTAGCAGTTGTTTTTCTTGGTGTGATTGTATTGGTTGTAATCTTTTACTTAAAGCCCCAGAAGCCAGTTTTTTCCCTTCAAAATGTAAGCTTGGATTCGTATAAGCTCAACGCCTATTCGGGTTCAACCCTATTTCTTTCATCTGTAATCACATTATCCCTGAATGCTACAAATCCTAACAAGGTTGGAATCTGGTATAGCCCTTCGGGTCTTGAAACTCTGAGTCTTCATGATGGACTGCCTTTTGGAACCATTCGGATTCCTGGTTTCCTTCAGCCTGCTCACAGCAGCAATGTGAGTTTCGAAACTAGGGTTCTGTTTCCATGTGTAAATGTCAGCCAGATTGTTGCGGAGGCTTCTTTGCAAGATGATTCTAGGAAGAACATGTTCCAGATGAAAATAGTAGGCGATGTTGGAGCTCACCTGTTGGCATTTCATATAATTCTGTTAAAGATCAAGATTGCGTTGGAGTGTGACTTAAATATTGATTATAAAGAGCTTATAATGAGAAATAAAGTTTACACCATTGGAGGAATTAAAAACCACATTGCATCCTTTCCTACCAACACCAACGCCAACACCTTCTTCATCAATTGCTCTTTGGCTTTGTACATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

240

Amino Acids

26.74

Weight (kDa)

9.0

Isoelectric Point (pI)

34.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35660
malus_domestica	MD17G1152300.v1.1
prunus_persica	Prupe.3G032500_v2.0.a1
pyrus_communis	pycom17g14560
rosa_chinensis	RchiOBHm_Chr2g0147641
rosa_laevigata	RLG00000020266
rosa_multiflora	Rmu_co8473547.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099430
rosa_rugosa	Rorug02G0400500
rosa_samantha	Rh2AG457900 Rh2CG445300
rosa_wichuraiana	Rw2G037430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	594, 605
AciI	CCGC	1 cut(s)	452
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	1 cut(s)	359
AfaI	GTAC	1 cut(s)	713
AflIII	ACRYGT	1 cut(s)	486
AgsI	TTSAA	4 cut(s)	67, 182, 228, 317
AjnI	CCWGG	1 cut(s)	364
AjuI	GAANNNNNNNTTGG	2 cut(s)	671, 703
AluBI	AGCT	4 cut(s)	192, 208, 521, 601
AluI	AGCT	4 cut(s)	192, 208, 521, 601
Alw21I	GWGCWC	1 cut(s)	523
ApeKI	GCWGC	1 cut(s)	390
ApoI	RAATTY	1 cut(s)	19
Asp700I	GAANNNNTTC	1 cut(s)	488
AsuHPI	GGTGA	1 cut(s)	515
AsuII	TTCGAA	1 cut(s)	405
BanII	GRGCYC	1 cut(s)	523
BbsI	GAAGAC	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	523
BbvI	GCAGC	1 cut(s)	402
BccI	CCATC	1 cut(s)	329
BceAI	ACGGC	1 cut(s)	36
BcgI	CGANNNNNNTGC	2 cut(s)	30, 64
BciT130I	CCWGG	1 cut(s)	366
BfaI	CTAG	3 cut(s)	411, 477, 718
BisI	GCNGC	1 cut(s)	391
BlsI	GCNGC	1 cut(s)	392
Bme1390I	CCNGG	1 cut(s)	366
BmiI	GGNNCC	1 cut(s)	352
BmrFI	CCNGG	1 cut(s)	366
BmsI	GCATC	1 cut(s)	662
BpiI	GAAGAC	1 cut(s)	320
Bpu14I	TTCGAA	1 cut(s)	405
Bse1I	ACTGG	1 cut(s)	167
Bse3DI	GCAATG	2 cut(s)	400, 648
BseBI	CCWGG	1 cut(s)	366
BseGI	GGATG	2 cut(s)	10, 653
BseMI	GCAATG	2 cut(s)	400, 648
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	402
BsiHKAI	GWGCWC	1 cut(s)	523
BsmI	GAATGC	1 cut(s)	271
Bsp119I	TTCGAA	1 cut(s)	405
Bsp1286I	GDGCHC	1 cut(s)	523
Bsp1407I	TGTACA	1 cut(s)	711
Bsp143I	GATC	2 cut(s)	71, 555
BspACI	CCGC	1 cut(s)	452
BspCNI	CTCAG	1 cut(s)	315
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	352
BspT104I	TTCGAA	1 cut(s)	405
BsrDI	GCAATG	2 cut(s)	400, 648
BsrGI	TGTACA	1 cut(s)	711
BsrI	ACTGG	1 cut(s)	167
BssMI	GATC	2 cut(s)	71, 555
Bst2UI	CCWGG	1 cut(s)	366
BstAUI	TGTACA	1 cut(s)	711
BstBI	TTCGAA	1 cut(s)	405
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	2 cut(s)	103, 323
BstF5I	GGATG	2 cut(s)	10, 653
BstKTI	GATC	2 cut(s)	74, 558
BstMBI	GATC	2 cut(s)	71, 555
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstNI	CCWGG	1 cut(s)	366
BstNSI	RCATGY	1 cut(s)	490
BstSCI	CCNGG	1 cut(s)	364
BstV1I	GCAGC	1 cut(s)	402
BstV2I	GAAGAC	1 cut(s)	320
BtgZI	GCGATG	1 cut(s)	525
BtsCI	GGATG	2 cut(s)	10, 653
Cac8I	GCNNGC	1 cut(s)	381
CciI	TCATGA	1 cut(s)	331
Csp6I	GTAC	1 cut(s)	712
CviAII	CATG	4 cut(s)	75, 332, 426, 487
CviQI	GTAC	1 cut(s)	712
DdeI	CTNAG	2 cut(s)	103, 323
DpnI	GATC	2 cut(s)	73, 557
DpnII	GATC	2 cut(s)	71, 555
Ecl136II	GAGCTC	1 cut(s)	521
Eco24I	GRGCYC	1 cut(s)	523
Eco53kI	GAGCTC	1 cut(s)	521
Eco57I	CTGAAG	1 cut(s)	359
EcoICRI	GAGCTC	1 cut(s)	521
EcoRII	CCWGG	1 cut(s)	364
EcoT38I	GRGCYC	1 cut(s)	523
FaeI	CATG	4 cut(s)	78, 335, 429, 490
FatI	CATG	4 cut(s)	74, 331, 425, 486
Fnu4HI	GCNGC	1 cut(s)	391
FokI	GGATG	2 cut(s)	17, 640
FriOI	GRGCYC	1 cut(s)	523
Fsp4HI	GCNGC	1 cut(s)	391
FspBI	CTAG	3 cut(s)	411, 477, 718
GluI	GCNGC	1 cut(s)	391
Hin1II	CATG	4 cut(s)	78, 335, 429, 490
HindIII	AAGCTT	1 cut(s)	190
HinfI	GANTC	5 cut(s)	197, 291, 325, 361, 473
HphI	GGTGA	1 cut(s)	515
Hpy166II	GTNNAC	1 cut(s)	622
Hpy188I	TCNGA	4 cut(s)	25, 41, 324, 360
Hpy188III	TCNNGA	4 cut(s)	314, 332, 493, 559
Hpy8I	GTNNAC	1 cut(s)	622
HpyAV	CCTTC	4 cut(s)	188, 315, 383, 694
HpyCH4V	TGCA	3 cut(s)	56, 466, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	2 cut(s)	103, 323
Hsp92II	CATG	4 cut(s)	78, 335, 429, 490
Kzo9I	GATC	2 cut(s)	71, 555
LmnI	GCTCC	1 cut(s)	518
Lsp1109I	GCAGC	1 cut(s)	402
LweI	GCATC	1 cut(s)	662
MaeI	CTAG	3 cut(s)	411, 477, 718
MaeIII	GTNAC	1 cut(s)	575
MalI	GATC	2 cut(s)	73, 557
MboI	GATC	2 cut(s)	71, 555
MboII	GAAGA	3 cut(s)	320, 493, 679
MfeI	CAATTG	1 cut(s)	694
MhlI	GDGCHC	1 cut(s)	523
MluCI	AATT	4 cut(s)	19, 543, 636, 694
MlyI	GAGTC	1 cut(s)	334
MmeI	TCCRAC	3 cut(s)	268, 496, 549
MnlI	CCTC	3 cut(s)	98, 448, 626
MroXI	GAANNNNTTC	1 cut(s)	488
MseI	TTAA	4 cut(s)	152, 551, 581, 639
MspR9I	CCNGG	1 cut(s)	366
MunI	CAATTG	1 cut(s)	694
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	1 cut(s)	163
NdeII	GATC	2 cut(s)	71, 555
NlaIII	CATG	4 cut(s)	78, 335, 429, 490
NlaIV	GGNNCC	1 cut(s)	352
NmuCI	GTSAC	1 cut(s)	575
NspI	RCATGY	1 cut(s)	490
NspV	TTCGAA	1 cut(s)	405
PagI	TCATGA	1 cut(s)	331
PciI	ACATGT	1 cut(s)	486
PctI	GAATGC	1 cut(s)	271
PdmI	GAANNNNTTC	1 cut(s)	488
PfeI	GAWTC	4 cut(s)	197, 291, 361, 473
PkrI	GCNGC	1 cut(s)	392
PleI	GAGTC	1 cut(s)	333
PpsI	GAGTC	1 cut(s)	333
PscI	ACATGT	1 cut(s)	486
PsiI	TTATAA	2 cut(s)	594, 605
Psp124BI	GAGCTC	1 cut(s)	523
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	352
RsaI	GTAC	1 cut(s)	713
RsaNI	GTAC	1 cut(s)	712
SacI	GAGCTC	1 cut(s)	523
SaqAI	TTAA	4 cut(s)	152, 551, 581, 639
SatI	GCNGC	1 cut(s)	391
Sau3AI	GATC	2 cut(s)	71, 555
SchI	GAGTC	1 cut(s)	334
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	1 cut(s)	523
SetI	ASST	7 cut(s)	194, 210, 288, 523, 528, 603, 686
SfaNI	GCATC	1 cut(s)	662
SfuI	TTCGAA	1 cut(s)	405
Sse9I	AATT	4 cut(s)	19, 543, 636, 694
SsiI	CCGC	1 cut(s)	452
SspI	AATATT	1 cut(s)	586
SspMI	CTAG	3 cut(s)	411, 477, 718
SstI	GAGCTC	1 cut(s)	523
StyD4I	CCNGG	1 cut(s)	364
TaqI	TCGA	1 cut(s)	405
TasI	AATT	4 cut(s)	19, 543, 636, 694
TatI	WGTACW	1 cut(s)	711
TfiI	GAWTC	4 cut(s)	197, 291, 361, 473
Tru1I	TTAA	4 cut(s)	152, 551, 581, 639
Tru9I	TTAA	4 cut(s)	152, 551, 581, 639
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	1 cut(s)	390
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	5 cut(s)	231, 320, 512, 527, 679
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	1 cut(s)	490
XmnI	GAANNNNTTC	1 cut(s)	488
XspI	CTAG	3 cut(s)	411, 477, 718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.