Rw2G037430

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0017697
Physical Location & Seq
Reverse (-)
61713510 .. 61714204
695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G037430.1

Sequence Viewer

Length: 552 bp
ATGAAGCCCCAAAAGCCATTTTTTTCCCTCCAAGATGTAAGTGTGGATTCGTATAAGCTCAATGCCTATTCTGGTTCGACCCTGTTTGTTTCATCAGTAATCACATTGACCCTGAATGCTCAAAATCATAACAAAATTGGCATCTGGTATACTCCTTCCCACCTAGAAGCTCTTTATGATGGCCTGCCTATAGGAACAATTCGGATTCCCGGGTTTCTTCAACCTGCTCATAGTAGTAATGTGACTATGCAGACAAGGCTTTTATTTCCATGTGTGAATGCCAGCCAGATTATAGGAGAGGCTTCAATTCAAGAAGATTCCAGGAAAAATATGTTTCAGATGAAAATAGTAGGTGATGTTGGAGCTCACCTGCTGGTATTTCACATAATCGTTTTAAAGATCAAGGTTGGTCTGGAGTGTGACATAAATATTGATTACGAAGAGCTGACCAACAGAAACGAAGTTCACAACACGACTGGATCTTTTCCGGCATCTTTTCCTACCAACACCCAGTCCTTGATCATGAACTGCACATGGGCTTTGTACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

183

Amino Acids

20.44

Weight (kDa)

6.27

Isoelectric Point (pI)

38.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017697)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35660
malus_domestica MD17G1152300.v1.1
prunus_persica Prupe.3G032500_v2.0.a1
pyrus_communis pycom17g14560
rosa_chinensis RchiOBHm_Chr2g0147641
rosa_laevigata RLG00000020266
rosa_multiflora Rmu_co8473547.1_g000001
rosa_roxburghii Rroxscaffold_2G00099430
rosa_rugosa Rorug02G0400500
rosa_samantha Rh2AG457900 Rh2CG445300
rosa_wichuraiana Rw2G037430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 378
Acc36I ACCTGC 2 cut(s) 232, 378
AccI GTMKAC 1 cut(s) 149
AclWI GGATC 1 cut(s) 487
AfaI GTAC 1 cut(s) 545
AflIII ACRYGT 1 cut(s) 546
AgsI TTSAA 3 cut(s) 221, 306, 311
AjnI CCWGG 1 cut(s) 320
AluBI AGCT 4 cut(s) 58, 170, 365, 445
AluI AGCT 4 cut(s) 58, 170, 365, 445
Alw21I GWGCWC 1 cut(s) 367
AlwI GGATC 1 cut(s) 487
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 1 cut(s) 181
AsuC2I CCSGG 2 cut(s) 210, 211
AsuHPI GGTGA 2 cut(s) 359, 365
AvaI CYCGRG 1 cut(s) 209
BanII GRGCYC 1 cut(s) 367
Bbv12I GWGCWC 1 cut(s) 367
BccI CCATC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 322
BclI TGATCA 1 cut(s) 519
BcnI CCSGG 2 cut(s) 210, 211
BfaI CTAG 1 cut(s) 164
BfmI CTRYAG 1 cut(s) 189
BfuAI ACCTGC 2 cut(s) 232, 378
Bme1390I CCNGG 3 cut(s) 210, 211, 322
BmeT110I CYCGRG 1 cut(s) 209
BmrFI CCNGG 3 cut(s) 210, 211, 322
BmrI ACTGGG 1 cut(s) 505
BmsI GCATC 2 cut(s) 150, 500
BmuI ACTGGG 1 cut(s) 505
BpmI CTGGAG 1 cut(s) 434
BpuMI CCSGG 2 cut(s) 210, 211
BsaJI CCNNGG 1 cut(s) 209
Bse1I ACTGG 2 cut(s) 481, 511
BseBI CCWGG 1 cut(s) 322
BseDI CCNNGG 1 cut(s) 209
BseNI ACTGG 2 cut(s) 481, 511
BsgI GTGCAG 1 cut(s) 514
BshFI GGCC 1 cut(s) 183
BsiHKAI GWGCWC 1 cut(s) 367
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 2 cut(s) 210, 488
BsmI GAATGC 2 cut(s) 121, 283
BsnI GGCC 1 cut(s) 183
BsoBI CYCGRG 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 367
Bsp1407I TGTACA 1 cut(s) 543
Bsp143I GATC 3 cut(s) 399, 479, 519
BspANI GGCC 1 cut(s) 183
BspHI TCATGA 1 cut(s) 522
BspMI ACCTGC 2 cut(s) 232, 378
BspPI GGATC 1 cut(s) 487
BspQI GCTCTTC 1 cut(s) 435
BsrGI TGTACA 1 cut(s) 543
BsrI ACTGG 2 cut(s) 481, 511
BssECI CCNNGG 1 cut(s) 209
BssMI GATC 3 cut(s) 399, 479, 519
BssNAI GTATAC 1 cut(s) 150
Bst1107I GTATAC 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 322
Bst6I CTCTTC 1 cut(s) 435
BstAUI TGTACA 1 cut(s) 543
BstC8I GCNNGC 2 cut(s) 185, 283
BstKTI GATC 3 cut(s) 402, 482, 522
BstMBI GATC 3 cut(s) 399, 479, 519
BstMWI GCNNNNNNNGC 2 cut(s) 13, 256
BstNI CCWGG 1 cut(s) 322
BstNSI RCATGY 1 cut(s) 550
BstSCI CCNGG 3 cut(s) 208, 209, 320
BstSFI CTRYAG 1 cut(s) 189
BstX2I RGATCY 1 cut(s) 479
BstYI RGATCY 1 cut(s) 479
BstZ17I GTATAC 1 cut(s) 150
BsuRI GGCC 1 cut(s) 183
BveI ACCTGC 2 cut(s) 232, 378
Cac8I GCNNGC 2 cut(s) 185, 283
CciI TCATGA 1 cut(s) 522
Cfr9I CCCGGG 1 cut(s) 209
Csp6I GTAC 1 cut(s) 544
CviAII CATG 4 cut(s) 270, 523, 534, 547
CviQI GTAC 1 cut(s) 544
DpnI GATC 3 cut(s) 401, 481, 521
DpnII GATC 3 cut(s) 399, 479, 519
DraI TTTAAA 1 cut(s) 396
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
Ecl136II GAGCTC 1 cut(s) 365
Eco24I GRGCYC 1 cut(s) 367
Eco53kI GAGCTC 1 cut(s) 365
Eco88I CYCGRG 1 cut(s) 209
EcoICRI GAGCTC 1 cut(s) 365
EcoRII CCWGG 1 cut(s) 320
EcoT38I GRGCYC 1 cut(s) 367
FaeI CATG 4 cut(s) 273, 526, 537, 550
FatI CATG 4 cut(s) 269, 522, 533, 546
FbaI TGATCA 1 cut(s) 519
FblI GTMKAC 1 cut(s) 149
FriOI GRGCYC 1 cut(s) 367
FspBI CTAG 1 cut(s) 164
GsuI CTGGAG 1 cut(s) 434
HaeIII GGCC 1 cut(s) 183
HapII CCGG 2 cut(s) 210, 488
Hin1II CATG 4 cut(s) 273, 526, 537, 550
HinfI GANTC 3 cut(s) 47, 205, 317
HpaII CCGG 2 cut(s) 210, 488
HphI GGTGA 2 cut(s) 359, 365
Hpy166II GTNNAC 2 cut(s) 150, 466
Hpy188I TCNGA 2 cut(s) 204, 339
Hpy188III TCNNGA 3 cut(s) 311, 413, 523
Hpy8I GTNNAC 2 cut(s) 150, 466
HpyAV CCTTC 1 cut(s) 165
HpyCH4V TGCA 2 cut(s) 250, 531
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 256
Hsp92II CATG 4 cut(s) 273, 526, 537, 550
Ksp22I TGATCA 1 cut(s) 519
Kzo9I GATC 3 cut(s) 399, 479, 519
LguI GCTCTTC 1 cut(s) 435
LmnI GCTCC 1 cut(s) 362
LweI GCATC 2 cut(s) 150, 500
MaeI CTAG 1 cut(s) 164
MaeIII GTNAC 2 cut(s) 241, 419
MalI GATC 3 cut(s) 401, 481, 521
MboI GATC 3 cut(s) 399, 479, 519
MboII GAAGA 3 cut(s) 209, 326, 452
MflI RGATCY 1 cut(s) 479
MhlI GDGCHC 1 cut(s) 367
MluCI AATT 3 cut(s) 135, 198, 306
MmeI TCCRAC 1 cut(s) 340
MnlI CCTC 2 cut(s) 38, 292
MseI TTAA 1 cut(s) 395
MspI CCGG 2 cut(s) 210, 488
MspR9I CCNGG 3 cut(s) 210, 211, 322
Mva1269I GAATGC 2 cut(s) 121, 283
MvaI CCWGG 1 cut(s) 322
MwoI GCNNNNNNNGC 2 cut(s) 13, 256
NciI CCSGG 2 cut(s) 210, 211
NdeII GATC 3 cut(s) 399, 479, 519
NlaIII CATG 4 cut(s) 273, 526, 537, 550
NmuCI GTSAC 2 cut(s) 241, 419
NspI RCATGY 1 cut(s) 550
PagI TCATGA 1 cut(s) 522
PaqCI CACCTGC 1 cut(s) 378
PciI ACATGT 1 cut(s) 546
PciSI GCTCTTC 1 cut(s) 435
PctI GAATGC 2 cut(s) 121, 283
PfeI GAWTC 3 cut(s) 47, 205, 317
PfoI TCCNGGA 1 cut(s) 320
PscI ACATGT 1 cut(s) 546
Psp124BI GAGCTC 1 cut(s) 367
Psp6I CCWGG 1 cut(s) 320
PspGI CCWGG 1 cut(s) 320
PsuI RGATCY 1 cut(s) 479
RsaI GTAC 1 cut(s) 545
RsaNI GTAC 1 cut(s) 544
SacI GAGCTC 1 cut(s) 367
SapI GCTCTTC 1 cut(s) 435
SaqAI TTAA 1 cut(s) 395
Sau3AI GATC 3 cut(s) 399, 479, 519
ScrFI CCNGG 3 cut(s) 210, 211, 322
SduI GDGCHC 1 cut(s) 367
SetI ASST 9 cut(s) 60, 165, 172, 226, 355, 367, 372, 408, 447
SfaNI GCATC 2 cut(s) 150, 500
SfcI CTRYAG 1 cut(s) 189
SmaI CCCGGG 1 cut(s) 211
Sse9I AATT 3 cut(s) 135, 198, 306
SspI AATATT 1 cut(s) 430
SspMI CTAG 1 cut(s) 164
SstI GAGCTC 1 cut(s) 367
StyD4I CCNGG 3 cut(s) 208, 209, 320
TaqI TCGA 1 cut(s) 77
TasI AATT 3 cut(s) 135, 198, 306
TatI WGTACW 1 cut(s) 543
TfiI GAWTC 3 cut(s) 47, 205, 317
Tru1I TTAA 1 cut(s) 395
Tru9I TTAA 1 cut(s) 395
TseFI GTSAC 2 cut(s) 241, 419
Tsp45I GTSAC 2 cut(s) 241, 419
TspDTI ATGAA 4 cut(s) 17, 81, 356, 539
TspMI CCCGGG 1 cut(s) 209
XceI RCATGY 1 cut(s) 550
XmaI CCCGGG 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 149
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.