Prupe.3G032500_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0017697
Physical Location & Seq
Forward (+)
2409133 .. 2410131
999 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G032500.1

Sequence Viewer

Length: 684 bp
ATGGATGTTTCATTGCACAACTCAAGTTACTTATGTTGCCAAAAACTCTGCCATGCGTATTCTTTCAAAAGATGCAGTTTCTTTCTCCTCTTGTTTGTTACCCTAGCAATAGTTTTTCTTGGTGTAGCTGCATTGATCGTAATCTTCATCATGAAGCCCCAAAGGCCAGTTTTTTCCCTCGAAACTGTAAGCTTGGATTTGTATACGCTCGAAGCCTATTCGGATTCAACGCTGTTTCTTTCATCAGCAATCACATTGACCCTGAATGCTCAAAATCCTAACAAGGTTGGCATCTGGTATAGCCCTTCACATCTTGAAGTTTTGGATGGAGGACTGTCTATAGGAACAATCCGGATTCCCGGCTTTCTTCAGCCTGCTCACAGCAGCAACGTGAGTGTCGAAATAAGGGTTCTGTTTCCATGTTTGAATGTCAGCCAGATTGTGGCAGAGGCTTCATTGCAAGACGATTCAAGGAAAAACATGTTTCAAATGAAAATTGTAGGCGATGTTGGAGCTCACCTCTGGGTGTTTCATATAATTTTGTTGAAGATTAAGGTTGCACTGGAGTGTGACATAAGTATTGATTATAAAGAGCTTACGATGAAAAATGAAGTTCACACCATTGGAGTTAAACATCACACTGTATGTTTCACCACTCTTGATCACATGGTTTCTTTCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

228

Amino Acids

25.38

Weight (kDa)

6.53

Isoelectric Point (pI)

31.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017697)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35660
malus_domestica MD17G1152300.v1.1
prunus_persica Prupe.3G032500_v2.0.a1
pyrus_communis pycom17g14560
rosa_chinensis RchiOBHm_Chr2g0147641
rosa_laevigata RLG00000020266
rosa_multiflora Rmu_co8473547.1_g000001
rosa_roxburghii Rroxscaffold_2G00099430
rosa_rugosa Rorug02G0400500
rosa_samantha Rh2AG457900 Rh2CG445300
rosa_wichuraiana Rw2G037430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 588
AccB7I CCANNNNNTGG 1 cut(s) 442
AccI GTMKAC 1 cut(s) 203
AccIII TCCGGA 1 cut(s) 351
AcuI CTGAAG 1 cut(s) 353
AfiI CCNNNNNNNGG 1 cut(s) 442
AflIII ACRYGT 1 cut(s) 480
AgsI TTSAA 7 cut(s) 67, 228, 317, 427, 471, 488, 547
AleI CACNNNNGTG 1 cut(s) 565
AluBI AGCT 4 cut(s) 128, 192, 515, 595
AluI AGCT 4 cut(s) 128, 192, 515, 595
Alw21I GWGCWC 1 cut(s) 517
Aor13HI TCCGGA 1 cut(s) 351
AoxI GGCC 1 cut(s) 164
ApeKI GCWGC 2 cut(s) 128, 384
AsuC2I CCSGG 1 cut(s) 360
AsuHPI GGTGA 2 cut(s) 509, 643
BanII GRGCYC 1 cut(s) 517
Bbv12I GWGCWC 1 cut(s) 517
BbvI GCAGC 2 cut(s) 115, 396
BccI CCATC 1 cut(s) 320
BclI TGATCA 1 cut(s) 661
BcnI CCSGG 1 cut(s) 360
BfaI CTAG 1 cut(s) 104
BfmI CTRYAG 1 cut(s) 339
BglI GCCNNNNNGGC 1 cut(s) 163
BisI GCNGC 2 cut(s) 129, 385
BlsI GCNGC 2 cut(s) 130, 386
Bme1390I CCNGG 1 cut(s) 360
BmrFI CCNGG 1 cut(s) 360
BmsI GCATC 2 cut(s) 62, 300
BplI GAGNNNNNCTC 2 cut(s) 504, 536
BpmI CTGGAG 1 cut(s) 584
BpuEI CTTGAG 1 cut(s) 7
BpuMI CCSGG 1 cut(s) 360
BsaBI GATNNNNATC 1 cut(s) 140
BsaWI WCCGGW 1 cut(s) 351
Bsc4I CCNNNNNNNGG 1 cut(s) 442
Bse1I ACTGG 2 cut(s) 167, 567
Bse3DI GCAATG 2 cut(s) 11, 455
Bse8I GATNNNNATC 1 cut(s) 140
BseAI TCCGGA 1 cut(s) 351
BseGI GGATG 2 cut(s) 10, 331
BseJI GATNNNNATC 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 442
BseMI GCAATG 2 cut(s) 11, 455
BseNI ACTGG 2 cut(s) 167, 567
BseRI GAGGAG 1 cut(s) 77
BseXI GCAGC 2 cut(s) 115, 396
BshFI GGCC 1 cut(s) 166
BsiHKAI GWGCWC 1 cut(s) 517
BsiSI CCGG 2 cut(s) 352, 360
BslI CCNNNNNNNGG 1 cut(s) 442
BsmI GAATGC 1 cut(s) 271
BsnI GGCC 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 517
Bsp13I TCCGGA 1 cut(s) 351
Bsp143I GATC 2 cut(s) 135, 661
BspANI GGCC 1 cut(s) 166
BspEI TCCGGA 1 cut(s) 351
BspHI TCATGA 1 cut(s) 150
BsrDI GCAATG 2 cut(s) 11, 455
BsrI ACTGG 2 cut(s) 167, 567
BssMI GATC 2 cut(s) 135, 661
BssNAI GTATAC 1 cut(s) 204
Bst1107I GTATAC 1 cut(s) 204
Bst4CI ACNGT 3 cut(s) 187, 336, 643
BstC8I GCNNGC 1 cut(s) 375
BstF5I GGATG 2 cut(s) 10, 331
BstKTI GATC 2 cut(s) 138, 664
BstMBI GATC 2 cut(s) 135, 661
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstNSI RCATGY 1 cut(s) 484
BstSCI CCNGG 1 cut(s) 358
BstSFI CTRYAG 1 cut(s) 339
BstV1I GCAGC 2 cut(s) 115, 396
BstZ17I GTATAC 1 cut(s) 204
BsuRI GGCC 1 cut(s) 166
BtgZI GCGATG 1 cut(s) 519
BtsCI GGATG 2 cut(s) 10, 331
BtsIMutI CAGTG 2 cut(s) 560, 639
Cac8I GCNNGC 1 cut(s) 375
CciI TCATGA 1 cut(s) 150
CviAII CATG 5 cut(s) 53, 151, 420, 481, 667
DpnI GATC 2 cut(s) 137, 663
DpnII GATC 2 cut(s) 135, 661
Ecl136II GAGCTC 1 cut(s) 515
Eco24I GRGCYC 1 cut(s) 517
Eco53kI GAGCTC 1 cut(s) 515
Eco57I CTGAAG 1 cut(s) 353
EcoICRI GAGCTC 1 cut(s) 515
EcoT38I GRGCYC 1 cut(s) 517
FaeI CATG 5 cut(s) 56, 154, 423, 484, 670
FatI CATG 5 cut(s) 52, 150, 419, 480, 666
FbaI TGATCA 1 cut(s) 661
FblI GTMKAC 1 cut(s) 203
Fnu4HI GCNGC 2 cut(s) 129, 385
FokI GGATG 2 cut(s) 17, 338
FriOI GRGCYC 1 cut(s) 517
Fsp4HI GCNGC 2 cut(s) 129, 385
FspBI CTAG 1 cut(s) 104
GluI GCNGC 2 cut(s) 129, 385
GsuI CTGGAG 1 cut(s) 584
HaeIII GGCC 1 cut(s) 166
HapII CCGG 2 cut(s) 352, 360
Hin1II CATG 5 cut(s) 56, 154, 423, 484, 670
HindIII AAGCTT 1 cut(s) 190
HinfI GANTC 3 cut(s) 224, 355, 467
HpaII CCGG 2 cut(s) 352, 360
HphI GGTGA 2 cut(s) 509, 643
Hpy166II GTNNAC 2 cut(s) 204, 616
Hpy188I TCNGA 1 cut(s) 223
Hpy188III TCNNGA 4 cut(s) 151, 314, 352, 659
Hpy8I GTNNAC 2 cut(s) 204, 616
HpyAV CCTTC 1 cut(s) 315
HpyCH4III ACNGT 3 cut(s) 187, 336, 643
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 5 cut(s) 16, 75, 131, 460, 560
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
HpySE526I ACGT 1 cut(s) 390
Hsp92II CATG 5 cut(s) 56, 154, 423, 484, 670
Kpn2I TCCGGA 1 cut(s) 351
Ksp22I TGATCA 1 cut(s) 661
Kzo9I GATC 2 cut(s) 135, 661
LmnI GCTCC 1 cut(s) 512
LpnPI CCDG 9 cut(s) 180, 275, 280, 365, 373, 387, 449, 508, 548
Lsp1109I GCAGC 2 cut(s) 115, 396
LweI GCATC 2 cut(s) 62, 300
MaeI CTAG 1 cut(s) 104
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 3 cut(s) 26, 97, 569
MalI GATC 2 cut(s) 137, 663
MboI GATC 2 cut(s) 135, 661
MboII GAAGA 3 cut(s) 136, 359, 559
MhlI GDGCHC 1 cut(s) 517
MluCI AATT 2 cut(s) 495, 537
MmeI TCCRAC 1 cut(s) 490
MnlI CCTC 5 cut(s) 98, 188, 323, 442, 530
MroI TCCGGA 1 cut(s) 351
MseI TTAA 3 cut(s) 552, 630, 682
MslI CAYNNNNRTG 1 cut(s) 565
MspI CCGG 2 cut(s) 352, 360
MspR9I CCNGG 1 cut(s) 360
Mva1269I GAATGC 1 cut(s) 271
MwoI GCNNNNNNNGC 1 cut(s) 163
NciI CCSGG 1 cut(s) 360
NdeII GATC 2 cut(s) 135, 661
NlaIII CATG 5 cut(s) 56, 154, 423, 484, 670
NmuCI GTSAC 1 cut(s) 569
NspI RCATGY 1 cut(s) 484
OliI CACNNNNGTG 1 cut(s) 565
PagI TCATGA 1 cut(s) 150
PciI ACATGT 1 cut(s) 480
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PctI GAATGC 1 cut(s) 271
PfeI GAWTC 3 cut(s) 224, 355, 467
PflMI CCANNNNNTGG 1 cut(s) 442
PkrI GCNGC 2 cut(s) 130, 386
PscI ACATGT 1 cut(s) 480
PsiI TTATAA 1 cut(s) 588
Psp124BI GAGCTC 1 cut(s) 517
RseI CAYNNNNRTG 1 cut(s) 565
SacI GAGCTC 1 cut(s) 517
SaqAI TTAA 3 cut(s) 552, 630, 682
SatI GCNGC 2 cut(s) 129, 385
Sau3AI GATC 2 cut(s) 135, 661
ScrFI CCNGG 1 cut(s) 360
SduI GDGCHC 1 cut(s) 517
SetI ASST 8 cut(s) 130, 194, 288, 393, 517, 522, 558, 597
SfaNI GCATC 2 cut(s) 62, 300
SfcI CTRYAG 1 cut(s) 339
SmiMI CAYNNNNRTG 1 cut(s) 565
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
Sse9I AATT 2 cut(s) 495, 537
SspMI CTAG 1 cut(s) 104
SstI GAGCTC 1 cut(s) 517
StyD4I CCNGG 1 cut(s) 358
TaaI ACNGT 3 cut(s) 187, 336, 643
TaiI ACGT 1 cut(s) 393
TaqI TCGA 3 cut(s) 180, 210, 399
TasI AATT 2 cut(s) 495, 537
TfiI GAWTC 3 cut(s) 224, 355, 467
Tru1I TTAA 3 cut(s) 552, 630, 682
Tru9I TTAA 3 cut(s) 552, 630, 682
TscAI CASTG 2 cut(s) 567, 646
TseFI GTSAC 1 cut(s) 569
TseI GCWGC 2 cut(s) 128, 384
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 8 cut(s) 136, 167, 231, 444, 506, 521, 617, 624
TspRI CASTG 2 cut(s) 567, 646
Van91I CCANNNNNTGG 1 cut(s) 442
XceI RCATGY 1 cut(s) 484
XmiI GTMKAC 1 cut(s) 203
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.