RLG00000020266

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017697
Physical Location & Seq
Reverse (-)
63037054 .. 63037904
851 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020266

Sequence Viewer

Length: 714 bp
ATGGATGTCATCAGTTCATTCCAAAATTCGGAACACTCGTGTTGCCTAAAGCTTTGCCATGCATATTCTTTCAAAAGATCCTGTTTATTTCTCCTCCTCTTTCTTCTTGTACCAGTTGTTTTTCTGGGTGTAGCTACATTGATCATAATCTTCGTCATGAAGCCCCAAAAGCCAGTTTTTTCCCTCCAAGATGTAAGTGTGGATTCGTATAAGCTCAATGCCTATTCTGGTTCGACCCTGTTTGTTTCATCAGTAATCACATTGACCCTGAATGCTCAAAATCATAACAAAATTGGCATCTGGTATACTCCTTCCCACCTAGAAGCTCTTTATGATGGCCTGCCTATAGGAACAATTCGGATTCCCGGGTTTCTTCAACCTGCTCATAGTAGTAATGTGACTATGCAGACAAGGCTTTTGTTTCCATGTGTGAATGCCAGCCAGATTATAGGAGAGGCTTCGATGCAAGAAGATTCCAGGAAAAATATGTTTCAGATGAAAATAGTAGGTGATGTTGGAGCTCACCTGCTGGTATTTCACAAAATCCTTTTAAAGATCAAGGTTGGTCTGGAGTGTGACATAAACATTGATTACAAAGAGCTGACCCTGACCAACAGAAACGAAGTTCACAACACGACTGCATCTTTTTCGGCATCTTTTCCTACCAACACCCAGTCCTCGTTCATGAACTGCACATGGGCTTTGTACATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

238

Amino Acids

26.51

Weight (kDa)

8.15

Isoelectric Point (pI)

38.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017697)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35660
malus_domestica MD17G1152300.v1.1
prunus_persica Prupe.3G032500_v2.0.a1
pyrus_communis pycom17g14560
rosa_chinensis RchiOBHm_Chr2g0147641
rosa_laevigata RLG00000020266
rosa_multiflora Rmu_co8473547.1_g000001
rosa_roxburghii Rroxscaffold_2G00099430
rosa_rugosa Rorug02G0400500
rosa_samantha Rh2AG457900 Rh2CG445300
rosa_wichuraiana Rw2G037430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 534
Acc36I ACCTGC 2 cut(s) 388, 534
AccI GTMKAC 1 cut(s) 305
AclWI GGATC 1 cut(s) 72
AcsI RAATTY 1 cut(s) 25
AfaI GTAC 2 cut(s) 111, 707
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 2 cut(s) 73, 377
AjnI CCWGG 1 cut(s) 476
AluBI AGCT 6 cut(s) 52, 134, 214, 326, 521, 601
AluI AGCT 6 cut(s) 52, 134, 214, 326, 521, 601
Alw21I GWGCWC 1 cut(s) 523
AlwI GGATC 1 cut(s) 72
Ama87I CYCGRG 1 cut(s) 365
AoxI GGCC 1 cut(s) 337
ApoI RAATTY 1 cut(s) 25
ArsI GACNNNNNNTTYG 2 cut(s) 400, 432
AsuC2I CCSGG 2 cut(s) 366, 367
AsuHPI GGTGA 2 cut(s) 515, 521
AvaI CYCGRG 1 cut(s) 365
BanII GRGCYC 1 cut(s) 523
BauI CACGAG 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 523
BccI CCATC 1 cut(s) 329
BcgI CGANNNNNNTGC 2 cut(s) 630, 664
BciT130I CCWGG 1 cut(s) 478
BclI TGATCA 1 cut(s) 141
BcnI CCSGG 2 cut(s) 366, 367
BfaI CTAG 1 cut(s) 320
BfmI CTRYAG 1 cut(s) 345
BfuAI ACCTGC 2 cut(s) 388, 534
Bme1390I CCNGG 3 cut(s) 366, 367, 478
BmeT110I CYCGRG 1 cut(s) 365
BmrFI CCNGG 3 cut(s) 366, 367, 478
BmrI ACTGGG 1 cut(s) 667
BmsI GCATC 4 cut(s) 306, 453, 650, 662
BmuI ACTGGG 1 cut(s) 667
BpmI CTGGAG 1 cut(s) 590
BpuMI CCSGG 2 cut(s) 366, 367
BsaBI GATNNNNATC 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 365
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse1I ACTGG 3 cut(s) 113, 173, 673
Bse8I GATNNNNATC 1 cut(s) 146
BseBI CCWGG 1 cut(s) 478
BseDI CCNNGG 1 cut(s) 365
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 146
BseLI CCNNNNNNNGG 1 cut(s) 28
BseNI ACTGG 3 cut(s) 113, 173, 673
BseRI GAGGAG 2 cut(s) 83, 86
BsgI GTGCAG 1 cut(s) 676
BshFI GGCC 1 cut(s) 339
BsiHKAI GWGCWC 1 cut(s) 523
BsiHKCI CYCGRG 1 cut(s) 365
BsiSI CCGG 1 cut(s) 366
BslI CCNNNNNNNGG 1 cut(s) 28
BsmI GAATGC 2 cut(s) 277, 439
BsnI GGCC 1 cut(s) 339
BsoBI CYCGRG 1 cut(s) 365
Bsp1286I GDGCHC 1 cut(s) 523
Bsp1407I TGTACA 1 cut(s) 705
Bsp143I GATC 3 cut(s) 77, 141, 555
BspANI GGCC 1 cut(s) 339
BspHI TCATGA 2 cut(s) 156, 684
BspMI ACCTGC 2 cut(s) 388, 534
BspPI GGATC 1 cut(s) 72
BsrGI TGTACA 1 cut(s) 705
BsrI ACTGG 3 cut(s) 113, 173, 673
BssECI CCNNGG 1 cut(s) 365
BssMI GATC 3 cut(s) 77, 141, 555
BssNAI GTATAC 1 cut(s) 306
BssSI CACGAG 1 cut(s) 37
Bst1107I GTATAC 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 478
BstAUI TGTACA 1 cut(s) 705
BstC8I GCNNGC 2 cut(s) 341, 439
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 3 cut(s) 80, 144, 558
BstMBI GATC 3 cut(s) 77, 141, 555
BstMWI GCNNNNNNNGC 2 cut(s) 169, 412
BstNI CCWGG 1 cut(s) 478
BstSCI CCNGG 3 cut(s) 364, 365, 476
BstSFI CTRYAG 1 cut(s) 345
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
BstZ17I GTATAC 1 cut(s) 306
BsuRI GGCC 1 cut(s) 339
BtsCI GGATG 1 cut(s) 10
BveI ACCTGC 2 cut(s) 388, 534
Cac8I GCNNGC 2 cut(s) 341, 439
CciI TCATGA 2 cut(s) 156, 684
Cfr9I CCCGGG 1 cut(s) 365
Csp6I GTAC 2 cut(s) 110, 706
CviAII CATG 5 cut(s) 59, 157, 426, 685, 696
CviQI GTAC 2 cut(s) 110, 706
DpnI GATC 3 cut(s) 79, 143, 557
DpnII GATC 3 cut(s) 77, 141, 555
DraI TTTAAA 1 cut(s) 552
Ecl136II GAGCTC 1 cut(s) 521
Eco24I GRGCYC 1 cut(s) 523
Eco53kI GAGCTC 1 cut(s) 521
Eco88I CYCGRG 1 cut(s) 365
EcoICRI GAGCTC 1 cut(s) 521
EcoRII CCWGG 1 cut(s) 476
EcoT22I ATGCAT 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 523
FaeI CATG 5 cut(s) 62, 160, 429, 688, 699
FatI CATG 5 cut(s) 58, 156, 425, 684, 695
FbaI TGATCA 1 cut(s) 141
FblI GTMKAC 1 cut(s) 305
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 523
FspBI CTAG 1 cut(s) 320
GsuI CTGGAG 1 cut(s) 590
HaeIII GGCC 1 cut(s) 339
HapII CCGG 1 cut(s) 366
Hin1II CATG 5 cut(s) 62, 160, 429, 688, 699
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 3 cut(s) 203, 361, 473
HpaII CCGG 1 cut(s) 366
HphI GGTGA 2 cut(s) 515, 521
Hpy166II GTNNAC 2 cut(s) 306, 628
Hpy188I TCNGA 3 cut(s) 31, 360, 495
Hpy188III TCNNGA 3 cut(s) 157, 569, 685
Hpy8I GTNNAC 2 cut(s) 306, 628
HpyAV CCTTC 1 cut(s) 321
HpyCH4V TGCA 5 cut(s) 62, 406, 466, 641, 693
HpyF10VI GCNNNNNNNGC 2 cut(s) 169, 412
Hsp92II CATG 5 cut(s) 62, 160, 429, 688, 699
Ksp22I TGATCA 1 cut(s) 141
Kzo9I GATC 3 cut(s) 77, 141, 555
LmnI GCTCC 1 cut(s) 518
LweI GCATC 4 cut(s) 306, 453, 650, 662
MaeI CTAG 1 cut(s) 320
MaeIII GTNAC 2 cut(s) 397, 575
MalI GATC 3 cut(s) 79, 143, 557
MboI GATC 3 cut(s) 77, 141, 555
MboII GAAGA 4 cut(s) 95, 142, 365, 482
MflI RGATCY 1 cut(s) 77
MhlI GDGCHC 1 cut(s) 523
MluCI AATT 3 cut(s) 25, 291, 354
MmeI TCCRAC 1 cut(s) 496
MnlI CCTC 5 cut(s) 104, 107, 194, 448, 688
Mph1103I ATGCAT 1 cut(s) 64
MseI TTAA 1 cut(s) 551
MspI CCGG 1 cut(s) 366
MspR9I CCNGG 3 cut(s) 366, 367, 478
Mva1269I GAATGC 2 cut(s) 277, 439
MvaI CCWGG 1 cut(s) 478
MwoI GCNNNNNNNGC 2 cut(s) 169, 412
NciI CCSGG 2 cut(s) 366, 367
NdeII GATC 3 cut(s) 77, 141, 555
NlaIII CATG 5 cut(s) 62, 160, 429, 688, 699
NmuCI GTSAC 2 cut(s) 397, 575
NsiI ATGCAT 1 cut(s) 64
PagI TCATGA 2 cut(s) 156, 684
PaqCI CACCTGC 1 cut(s) 534
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PctI GAATGC 2 cut(s) 277, 439
PfeI GAWTC 3 cut(s) 203, 361, 473
PfoI TCCNGGA 1 cut(s) 476
Psp124BI GAGCTC 1 cut(s) 523
Psp6I CCWGG 1 cut(s) 476
PspGI CCWGG 1 cut(s) 476
PsuI RGATCY 1 cut(s) 77
RsaI GTAC 2 cut(s) 111, 707
RsaNI GTAC 2 cut(s) 110, 706
SacI GAGCTC 1 cut(s) 523
SaqAI TTAA 1 cut(s) 551
Sau3AI GATC 3 cut(s) 77, 141, 555
ScrFI CCNGG 3 cut(s) 366, 367, 478
SduI GDGCHC 1 cut(s) 523
SfaNI GCATC 4 cut(s) 306, 453, 650, 662
SfcI CTRYAG 1 cut(s) 345
SmaI CCCGGG 1 cut(s) 367
Sse9I AATT 3 cut(s) 25, 291, 354
SspMI CTAG 1 cut(s) 320
SstI GAGCTC 1 cut(s) 523
StyD4I CCNGG 3 cut(s) 364, 365, 476
TaqI TCGA 2 cut(s) 233, 461
TasI AATT 3 cut(s) 25, 291, 354
TatI WGTACW 1 cut(s) 705
TfiI GAWTC 3 cut(s) 203, 361, 473
Tru1I TTAA 1 cut(s) 551
Tru9I TTAA 1 cut(s) 551
TseFI GTSAC 2 cut(s) 397, 575
Tsp45I GTSAC 2 cut(s) 397, 575
TspDTI ATGAA 6 cut(s) 6, 173, 237, 512, 673, 701
TspMI CCCGGG 1 cut(s) 365
XapI RAATTY 1 cut(s) 25
XmaI CCCGGG 1 cut(s) 365
XmiI GTMKAC 1 cut(s) 305
XspI CTAG 1 cut(s) 320
Zsp2I ATGCAT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.