MD17G1224500.v1.1

magnesium transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
27287512 .. 27291147
3636 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1224500.v1.1.491

Sequence Viewer

Length: 1341 bp
ATGGAGGACCTCAAAGAGAGGCTGCTTCCACCAAAAGTCCCAAAACCTGCATCAGCTGTAAACCTTCGCGAAGCATCTTATCGATCATCTGCCTTTGGAAGGCAACCTTTTCAAGGAGTAGATGTTCTGGGGCTGAAGAAGCGGGGCCAGGGCCTTCGGTCTTGGATTCGCGTTGATACGTCTGGCAATTCTCAGATCATTGAGGTTGATAAGTTCAGCATGATGCGTCGTTGTGATCTTCCTGCTCGTGATCTACGCCTGCTTGATCCTTTATTTGTTTACCCTTCCACCATCCTTGGAAGAGAGAAAGCTATTGTGGTTAATCTAGAGCAGATTCGATGTATTATTACGGCCGATGAGGTTCTGCTTTTGAATTCCCTTGATAGCTATGTATTGCAGTATGTGGTGGAGCTTCAGAGAAGATTGACAACAAATGGAGTAGGTGATGTTTGGCAGTCTGATGGTTCTGGCTTGAGTCGGCAGAGAGGAAATAGAAATTTTGATAGTGTGTTTGGGAGCACATCACCTGATTATTTGCCCTTTGAGTTTAGGGCTTTAGAAGTTGCTCTGGAGGCTGCCTGTACATTTCTCGATTCTCAGGCAGCCGAACTAGAAATTGAAGCATATCCATTACTGGATGAGCTCACGTCAAAGATCAGTACACTAAACTTGGAACGTGCACGTCGTTTGAAAAGCAGACTTCTTGCCTTGACTCGGAGAGTTCAGAAGGTTCGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGATATGGCTGAGATGTATCTCACTGAGAAGAAAAGTCGCATGGAGTCAGCATTTTATGGTGATCAATCTATGATGGGGTACAGATCTACCGACGGTCCATCTCTTTCTGCTCCTGTTTCTCCTGTGTCTTCACCTCCCGATGGCCGAAAGCTTGAGAAAAGCCTGAGCATTGCAAGGAGTAGACATGAAAGCATGAGGAGTTCAGAAAGTGCCAAGGAGAGTATAGAAGAGCTTGAGATGTTACTGGAAGCATACTTTGTTGTCATTGATAGCACCCTCAATAAGCTGACATCGTTGAAAGAGTACATTGACGACACCGAAGATTTCATTAACATTCAGCTGGATAACGTTCGAAACCAGCTGATTCAATTTGAGTTGCTACTCACGACTGCAACGTTTGTTGTTGCCATATTTGGGGTTGTGGCAGGAATATTTGGGATGAATTTCGAAATATCATTGTTTGATGAGCCTGCTGCATTTCAGTGGGTACTTATAATTACAGGAGTAACTGGCTTTTGCATATTTTCTGCATTTGTGTGGTTCTTCAAGTACCGAAGACTGATGCCACTTTAG

Protein Analysis

447

Amino Acids

50.53

Weight (kDa)

5.07

Isoelectric Point (pI)

53.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRS2-like PF22099 61 - 270 3.9e-25 Magnesium transporter MRS2-like
MRS2-like PF22099 324 - 374 7.7e-07 Magnesium transporter MRS2-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1262
Acc36I ACCTGC 1 cut(s) 55
AccI GTMKAC 1 cut(s) 949
AccII CGCG 2 cut(s) 69, 171
AciI CCGC 1 cut(s) 142
AclI AACGTT 2 cut(s) 1116, 1163
AclWI GGATC 1 cut(s) 260
AcoI YGGCCR 2 cut(s) 351, 910
AcsI RAATTY 3 cut(s) 373, 496, 1210
AcuI CTGAAG 2 cut(s) 155, 398
AfaI GTAC 6 cut(s) 583, 661, 848, 1073, 1257, 1319
AfiI CCNNNNNNNGG 5 cut(s) 99, 113, 714, 908, 1182
AgsI TTSAA 7 cut(s) 113, 373, 620, 691, 1066, 1136, 1315
AjiI CACGTC 2 cut(s) 648, 683
AjnI CCWGG 1 cut(s) 147
AloI GAACNNNNNNTCC 2 cut(s) 108, 140
Alw21I GWGCWC 3 cut(s) 521, 645, 682
Alw44I GTGCAC 1 cut(s) 678
AlwI GGATC 1 cut(s) 260
AoxI GGCC 4 cut(s) 145, 151, 351, 910
ApaLI GTGCAC 1 cut(s) 678
ApeKI GCWGC 5 cut(s) 22, 575, 602, 748, 1241
ApoI RAATTY 3 cut(s) 373, 496, 1210
AspS9I GGNCC 4 cut(s) 7, 145, 151, 863
AsuHPI GGTGA 4 cut(s) 455, 516, 839, 891
AsuII TTCGAA 2 cut(s) 1120, 1215
AvaII GGWCC 2 cut(s) 7, 863
BaeGI GKGCMC 1 cut(s) 682
BanII GRGCYC 1 cut(s) 645
BauI CACGAG 1 cut(s) 246
BbsI GAAGAC 2 cut(s) 888, 1330
Bbv12I GWGCWC 3 cut(s) 521, 645, 682
BbvI GCAGC 5 cut(s) 9, 562, 614, 760, 1228
BccI CCATC 6 cut(s) 299, 455, 758, 835, 874, 902
BceAI ACGGC 1 cut(s) 366
BciT130I CCWGG 1 cut(s) 149
BclI TGATCA 1 cut(s) 829
BfaI CTAG 2 cut(s) 326, 611
BfuAI ACCTGC 1 cut(s) 55
BglII AGATCT 1 cut(s) 851
BisI GCNGC 5 cut(s) 23, 576, 603, 749, 1242
BlsI GCNGC 5 cut(s) 24, 577, 604, 750, 1243
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 2 cut(s) 7, 863
BmgBI CACGTC 2 cut(s) 648, 683
BmgT120I GGNCC 4 cut(s) 7, 145, 151, 863
BmiI GGNNCC 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 4 cut(s) 59, 83, 213, 1320
BpiI GAAGAC 2 cut(s) 888, 1330
BpmI CTGGAG 1 cut(s) 590
Bpu10I CCTNAGC 1 cut(s) 932
Bpu14I TTCGAA 2 cut(s) 1120, 1215
BpuEI CTTGAG 3 cut(s) 493, 941, 1022
Bsa29I ATCGAT 1 cut(s) 82
BsaJI CCNNGG 3 cut(s) 148, 295, 981
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
Bsc4I CCNNNNNNNGG 5 cut(s) 99, 113, 714, 908, 1182
Bse1I ACTGG 3 cut(s) 639, 1017, 1282
Bse3DI GCAATG 1 cut(s) 936
BseBI CCWGG 1 cut(s) 149
BseCI ATCGAT 1 cut(s) 82
BseDI CCNNGG 3 cut(s) 148, 295, 981
BseGI GGATG 5 cut(s) 291, 643, 742, 763, 1212
BseLI CCNNNNNNNGG 5 cut(s) 99, 113, 714, 908, 1182
BseMI GCAATG 1 cut(s) 936
BseMII CTCAG 5 cut(s) 206, 611, 768, 783, 923
BseNI ACTGG 3 cut(s) 639, 1017, 1282
BseRI GAGGAG 1 cut(s) 979
BseSI GKGCMC 1 cut(s) 682
BseX3I CGGCCG 1 cut(s) 351
BseXI GCAGC 5 cut(s) 9, 562, 614, 760, 1228
Bsh1236I CGCG 2 cut(s) 69, 171
Bsh1285I CGRYCG 1 cut(s) 354
BshFI GGCC 4 cut(s) 147, 153, 353, 912
BshVI ATCGAT 1 cut(s) 82
BsiEI CGRYCG 1 cut(s) 354
BsiHKAI GWGCWC 3 cut(s) 521, 645, 682
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 5 cut(s) 99, 113, 714, 908, 1182
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 4 cut(s) 147, 153, 353, 912
Bsp119I TTCGAA 2 cut(s) 1120, 1215
Bsp1286I GDGCHC 3 cut(s) 521, 645, 682
Bsp1407I TGTACA 1 cut(s) 581
Bsp143I GATC 8 cut(s) 83, 195, 235, 250, 265, 654, 829, 851
Bsp68I TCGCGA 1 cut(s) 69
BspACI CCGC 1 cut(s) 142
BspANI GGCC 4 cut(s) 147, 153, 353, 912
BspCNI CTCAG 5 cut(s) 205, 610, 769, 784, 924
BspDI ATCGAT 1 cut(s) 82
BspFNI CGCG 2 cut(s) 69, 171
BspLI GGNNCC 1 cut(s) 146
BspMI ACCTGC 1 cut(s) 55
BspPI GGATC 1 cut(s) 260
BspQI GCTCTTC 1 cut(s) 990
BspT104I TTCGAA 2 cut(s) 1120, 1215
BsrDI GCAATG 1 cut(s) 936
BsrGI TGTACA 1 cut(s) 581
BsrI ACTGG 3 cut(s) 639, 1017, 1282
BssECI CCNNGG 3 cut(s) 148, 295, 981
BssMI GATC 8 cut(s) 83, 195, 235, 250, 265, 654, 829, 851
BssSI CACGAG 1 cut(s) 246
BssT1I CCWWGG 2 cut(s) 295, 981
Bst2BI CACGAG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 863
Bst6I CTCTTC 2 cut(s) 295, 990
BstAUI TGTACA 1 cut(s) 581
BstBI TTCGAA 2 cut(s) 1120, 1215
BstC8I GCNNGC 2 cut(s) 260, 1239
BstDEI CTNAG 5 cut(s) 192, 597, 777, 792, 932
BstENI CCTNNNNNAGG 2 cut(s) 97, 111
BstF5I GGATG 5 cut(s) 291, 643, 742, 763, 1212
BstFNI CGCG 2 cut(s) 69, 171
BstKTI GATC 8 cut(s) 86, 198, 238, 253, 268, 657, 832, 854
BstMBI GATC 8 cut(s) 83, 195, 235, 250, 265, 654, 829, 851
BstMCI CGRYCG 1 cut(s) 354
BstMWI GCNNNNNNNGC 2 cut(s) 139, 572
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 147
BstSLI GKGCMC 1 cut(s) 682
BstUI CGCG 2 cut(s) 69, 171
BstV1I GCAGC 5 cut(s) 9, 562, 614, 760, 1228
BstV2I GAAGAC 2 cut(s) 888, 1330
BstX2I RGATCY 1 cut(s) 851
BstYI RGATCY 1 cut(s) 851
BstZI CGGCCG 1 cut(s) 351
Bsu15I ATCGAT 1 cut(s) 82
BsuRI GGCC 4 cut(s) 147, 153, 353, 912
BsuTUI ATCGAT 1 cut(s) 82
BtrI CACGTC 2 cut(s) 648, 683
BtsCI GGATG 5 cut(s) 291, 643, 742, 763, 1212
BtsIMutI CAGTG 2 cut(s) 789, 1256
BtuMI TCGCGA 1 cut(s) 69
BveI ACCTGC 1 cut(s) 55
Cac8I GCNNGC 2 cut(s) 260, 1239
Cfr13I GGNCC 4 cut(s) 7, 145, 151, 863
ClaI ATCGAT 1 cut(s) 82
CseI GACGC 1 cut(s) 215
Csp6I GTAC 6 cut(s) 582, 660, 847, 1072, 1256, 1318
CspCI CAANNNNNGTGG 2 cut(s) 277, 312
CviAII CATG 5 cut(s) 220, 754, 808, 953, 961
CviQI GTAC 6 cut(s) 582, 660, 847, 1072, 1256, 1318
DdeI CTNAG 5 cut(s) 192, 597, 777, 792, 932
DpnI GATC 8 cut(s) 85, 197, 237, 252, 267, 656, 831, 853
DpnII GATC 8 cut(s) 83, 195, 235, 250, 265, 654, 829, 851
EaeI YGGCCR 2 cut(s) 351, 910
EagI CGGCCG 1 cut(s) 351
Eam1104I CTCTTC 2 cut(s) 295, 990
EarI CTCTTC 2 cut(s) 295, 990
Ecl136II GAGCTC 1 cut(s) 643
EclXI CGGCCG 1 cut(s) 351
Eco130I CCWWGG 2 cut(s) 295, 981
Eco24I GRGCYC 1 cut(s) 645
Eco47I GGWCC 2 cut(s) 7, 863
Eco52I CGGCCG 1 cut(s) 351
Eco53kI GAGCTC 1 cut(s) 643
Eco57I CTGAAG 2 cut(s) 155, 398
EcoICRI GAGCTC 1 cut(s) 643
EcoNI CCTNNNNNAGG 2 cut(s) 97, 111
EcoO109I RGGNCCY 2 cut(s) 7, 151
EcoRI GAATTC 1 cut(s) 373
EcoRII CCWGG 1 cut(s) 147
EcoT14I CCWWGG 2 cut(s) 295, 981
EcoT38I GRGCYC 1 cut(s) 645
ErhI CCWWGG 2 cut(s) 295, 981
FaeI CATG 5 cut(s) 223, 757, 811, 956, 964
FalI AAGNNNNNCTT 2 cut(s) 91, 123
FaqI GGGAC 1 cut(s) 23
FatI CATG 5 cut(s) 219, 753, 807, 952, 960
FauI CCCGC 1 cut(s) 135
FbaI TGATCA 1 cut(s) 829
FblI GTMKAC 1 cut(s) 949
Fnu4HI GCNGC 5 cut(s) 23, 576, 603, 749, 1242
FokI GGATG 5 cut(s) 278, 650, 749, 770, 1219
FriOI GRGCYC 1 cut(s) 645
Fsp4HI GCNGC 5 cut(s) 23, 576, 603, 749, 1242
FspBI CTAG 2 cut(s) 326, 611
GluI GCNGC 5 cut(s) 23, 576, 603, 749, 1242
GsuI CTGGAG 1 cut(s) 590
HaeIII GGCC 4 cut(s) 147, 153, 353, 912
HgaI GACGC 1 cut(s) 215
Hin1II CATG 5 cut(s) 223, 757, 811, 956, 964
HindIII AAGCTT 1 cut(s) 917
HinfI GANTC 7 cut(s) 166, 334, 475, 593, 712, 812, 1132
HphI GGTGA 4 cut(s) 455, 516, 839, 891
Hpy166II GTNNAC 5 cut(s) 61, 280, 662, 680, 950
Hpy188I TCNGA 6 cut(s) 195, 417, 460, 717, 726, 973
Hpy188III TCNNGA 8 cut(s) 68, 248, 326, 569, 590, 734, 905, 1153
Hpy8I GTNNAC 5 cut(s) 61, 280, 662, 680, 950
Hpy99I CGWCG 3 cut(s) 231, 687, 863
HpyAV CCTTC 5 cut(s) 74, 93, 164, 294, 721
HpyCH4III ACNGT 1 cut(s) 863
HpyCH4IV ACGT 6 cut(s) 179, 647, 676, 682, 1116, 1163
HpyCH4V TGCA 8 cut(s) 50, 397, 680, 941, 1160, 1244, 1287, 1298
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 572
HpyF3I CTNAG 5 cut(s) 192, 597, 777, 792, 932
HpySE526I ACGT 6 cut(s) 179, 647, 676, 682, 1116, 1163
Hsp92II CATG 5 cut(s) 223, 757, 811, 956, 964
Ksp22I TGATCA 1 cut(s) 829
Kzo9I GATC 8 cut(s) 83, 195, 235, 250, 265, 654, 829, 851
LguI GCTCTTC 1 cut(s) 990
LmnI GCTCC 3 cut(s) 409, 516, 883
Lsp1109I GCAGC 5 cut(s) 9, 562, 614, 760, 1228
LweI GCATC 4 cut(s) 59, 83, 213, 1320
MaeI CTAG 2 cut(s) 326, 611
MaeII ACGT 6 cut(s) 179, 647, 676, 682, 1116, 1163
MaeIII GTNAC 2 cut(s) 1008, 1273
MalI GATC 8 cut(s) 85, 197, 237, 252, 267, 656, 831, 853
MboI GATC 8 cut(s) 83, 195, 235, 250, 265, 654, 829, 851
MflI RGATCY 1 cut(s) 851
MhlI GDGCHC 3 cut(s) 521, 645, 682
MluCI AATT 7 cut(s) 187, 373, 496, 615, 1136, 1210, 1263
MlyI GAGTC 3 cut(s) 484, 706, 821
MnlI CCTC 9 cut(s) 12, 20, 196, 352, 479, 565, 912, 957, 1055
MseI TTAA 2 cut(s) 321, 1098
MslI CAYNNNNRTG 2 cut(s) 1249, 1303
MspA1I CMGCKG 3 cut(s) 56, 1108, 1129
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
MvnI CGCG 2 cut(s) 69, 171
MwoI GCNNNNNNNGC 2 cut(s) 139, 572
NdeII GATC 8 cut(s) 83, 195, 235, 250, 265, 654, 829, 851
NlaIII CATG 5 cut(s) 223, 757, 811, 956, 964
NlaIV GGNNCC 1 cut(s) 146
NruI TCGCGA 1 cut(s) 69
NspV TTCGAA 2 cut(s) 1120, 1215
PciSI GCTCTTC 1 cut(s) 990
PcsI WCGNNNNNNNCGW 2 cut(s) 682, 1160
PfeI GAWTC 4 cut(s) 166, 334, 593, 1132
PkrI GCNGC 5 cut(s) 24, 577, 604, 750, 1243
PleI GAGTC 3 cut(s) 483, 706, 820
PpsI GAGTC 3 cut(s) 483, 706, 820
PpuMI RGGWCCY 1 cut(s) 7
PsiI TTATAA 1 cut(s) 1262
Psp124BI GAGCTC 1 cut(s) 645
Psp1406I AACGTT 2 cut(s) 1116, 1163
Psp5II RGGWCCY 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 146
PspPI GGNCC 4 cut(s) 7, 145, 151, 863
PspPPI RGGWCCY 1 cut(s) 7
PsuI RGATCY 1 cut(s) 851
PvuII CAGCTG 3 cut(s) 56, 1108, 1129
RruI TCGCGA 1 cut(s) 69
RsaI GTAC 6 cut(s) 583, 661, 848, 1073, 1257, 1319
RsaNI GTAC 6 cut(s) 582, 660, 847, 1072, 1256, 1318
RseI CAYNNNNRTG 2 cut(s) 1249, 1303
SacI GAGCTC 1 cut(s) 645
SapI GCTCTTC 1 cut(s) 990
SaqAI TTAA 2 cut(s) 321, 1098
SatI GCNGC 5 cut(s) 23, 576, 603, 749, 1242
Sau3AI GATC 8 cut(s) 83, 195, 235, 250, 265, 654, 829, 851
Sau96I GGNCC 4 cut(s) 7, 145, 151, 863
SchI GAGTC 3 cut(s) 484, 706, 821
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 3 cut(s) 521, 645, 682
SfaNI GCATC 4 cut(s) 59, 83, 213, 1320
SfuI TTCGAA 2 cut(s) 1120, 1215
SinI GGWCC 2 cut(s) 7, 863
SmiMI CAYNNNNRTG 2 cut(s) 1249, 1303
SmlI CTYRAG 3 cut(s) 472, 920, 1001
SmoI CTYRAG 3 cut(s) 472, 920, 1001
Sse9I AATT 7 cut(s) 187, 373, 496, 615, 1136, 1210, 1263
SsiI CCGC 1 cut(s) 142
SspI AATATT 1 cut(s) 1200
SspMI CTAG 2 cut(s) 326, 611
SstI GAGCTC 1 cut(s) 645
StyD4I CCNGG 1 cut(s) 147
StyI CCWWGG 2 cut(s) 295, 981
TaaI ACNGT 1 cut(s) 863
TaiI ACGT 6 cut(s) 182, 650, 679, 685, 1119, 1166
TaqI TCGA 5 cut(s) 82, 337, 591, 1120, 1215
TaqII GACCGA 1 cut(s) 147
TasI AATT 7 cut(s) 187, 373, 496, 615, 1136, 1210, 1263
TatI WGTACW 3 cut(s) 581, 659, 1071
TfiI GAWTC 4 cut(s) 166, 334, 593, 1132
Tru1I TTAA 2 cut(s) 321, 1098
Tru9I TTAA 2 cut(s) 321, 1098
TscAI CASTG 2 cut(s) 796, 1256
TseI GCWGC 5 cut(s) 22, 575, 602, 748, 1241
TspDTI ATGAA 4 cut(s) 753, 969, 1084, 1223
TspRI CASTG 2 cut(s) 796, 1256
VneI GTGCAC 1 cut(s) 678
VpaK11BI GGWCC 2 cut(s) 7, 863
XagI CCTNNNNNAGG 2 cut(s) 97, 111
XapI RAATTY 3 cut(s) 373, 496, 1210
XbaI TCTAGA 1 cut(s) 325
XmiI GTMKAC 1 cut(s) 949
XspI CTAG 2 cut(s) 326, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.