Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007227

Physical Location & Seq

Genomic Coordinates Reverse (-)

34744283 .. 34749708

Gene Structure 5426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0307000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGAGGGAGATAATGGGAATGGAGAGGAGATGGTACCGGGGCCTTGCTTGAGTGGGTACGTGGACGACGGTAGCACAGAGAGCCACCGATACTACCTGTCACGCAGAACCGTGCTGGAGATGTTAAGGGACAGAGGCTATTCCGTTACCTCCGACGAAATCGACCTCTCTCTCCAAGACTTCCGAGCCCTTCACGGCCAAACCCCCGACGTTGATCGCCTTCGCTTCTCCGCCGCTCACACCTCTGACCCTTCCGACAGGATTCTGGTCATCTACTGTGGGCCTGGTATAGTGAAGGTTAATGTTATCCGTGGGCTGCACAGTCAGATTGCTAATAAAGACACTTTGACTGGGCTCATATTAATTCTTCAAAGCCAAATAACAAGCCAAGCTCTGAAAACTCTGGATCTTTATCCATTTAAAGTGGAAATGTTCCAGATTACTGATTTGCTTGTTAATATAACGAAGCATGTCTTGAAGCCAAAGCATCAGGTCTTGACTGAACGAGCAAAACAAAATCTTCTGAAGAAGTATAACATAGAAGAAAAGCAGCTTCCTCGAATGTCGCAAAAGGATGCAATTGCGAAGTATTATGGACTTGAAAGGGGTCAAGTGGTGAAAGTTATCTACTCGCGTGATATCACTAAAGCACATGTTACATACCGTTGTGTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

225

Amino Acids

25.62

Weight (kDa)

8.65

Isoelectric Point (pI)

33.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb5_N	PF03871	26 - 109	4.9e-24	RNA polymerase Rpb5, N-terminal domain
RNA_pol_Rpb5_C	PF01191	152 - 224	1.8e-29	RNA polymerase Rpb5, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16010 AT1G16010 AT1G16010 AT1G80900 AT1G80900
fragaria_vesca	FvH4_6g28490
malus_domestica	MD09G1225700.v1.1 MD17G1224500.v1.1
prunus_persica	Prupe.3G100200_v2.0.a1 Prupe.3G100200_v2.0.a1 Prupe.3G100200_v2.0.a1 Prupe.3G100200_v2.0.a1 Prupe.3G100200_v2.0.a1
pyrus_communis	pycom09g14520 pycom17g22820
rosa_chinensis	RchiOBHm_Chr2g0132741
rosa_laevigata	RLG00000019274
rosa_multiflora	Rmu_sc0004972.1_g000001 Rmu_ssc0000074.1_g000006
rosa_roxburghii	Rroxscaffold_2G00111690
rosa_rugosa	Rorug02G0307000 Rorug02G0307000
rosa_samantha	Rh2AG359600 Rh2DG382500
rosa_wichuraiana	Rw2G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	34
AccB1I	GGYRCC	1 cut(s)	34
AccBSI	CCGCTC	1 cut(s)	236
AccII	CGCG	1 cut(s)	634
AciI	CCGC	2 cut(s)	231, 234
AclWI	GGATC	1 cut(s)	414
AcoI	YGGCCR	1 cut(s)	196
AcuI	CTGAAG	1 cut(s)	545
AfaI	GTAC	2 cut(s)	36, 59
AflIII	ACRYGT	1 cut(s)	652
AgsI	TTSAA	3 cut(s)	371, 478, 602
AjnI	CCWGG	1 cut(s)	283
AluBI	AGCT	2 cut(s)	392, 553
AluI	AGCT	2 cut(s)	392, 553
AlwI	GGATC	1 cut(s)	414
AoxI	GGCC	3 cut(s)	41, 196, 281
ApeKI	GCWGC	2 cut(s)	316, 550
AseI	ATTAAT	1 cut(s)	362
Asp718I	GGTACC	1 cut(s)	34
AspS9I	GGNCC	2 cut(s)	41, 281
AsuC2I	CCSGG	1 cut(s)	39
AsuHPI	GGTGA	1 cut(s)	628
BanI	GGYRCC	1 cut(s)	34
BanII	GRGCYC	2 cut(s)	190, 357
BbvI	GCAGC	2 cut(s)	303, 562
BccI	CCATC	1 cut(s)	25
BceAI	ACGGC	1 cut(s)	211
BcgI	CGANNNNNNTGC	2 cut(s)	539, 573
BciT130I	CCWGG	1 cut(s)	285
BcnI	CCSGG	1 cut(s)	39
BisI	GCNGC	3 cut(s)	234, 317, 551
BlsI	GCNGC	3 cut(s)	235, 318, 552
Bme1390I	CCNGG	2 cut(s)	39, 285
BmgT120I	GGNCC	2 cut(s)	41, 281
BmiI	GGNNCC	2 cut(s)	36, 42
BmrFI	CCNGG	2 cut(s)	39, 285
BmrI	ACTGGG	1 cut(s)	360
BmsI	GCATC	2 cut(s)	496, 565
BmuI	ACTGGG	1 cut(s)	360
BpmI	CTGGAG	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	70
BpuMI	CCSGG	1 cut(s)	39
BsaAI	YACGTR	1 cut(s)	61
BsaBI	GATNNNNATC	1 cut(s)	411
BsaJI	CCNNGG	2 cut(s)	38, 310
Bse1I	ACTGG	1 cut(s)	355
Bse8I	GATNNNNATC	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	2 cut(s)	38, 310
BseGI	GGATG	1 cut(s)	580
BseJI	GATNNNNATC	1 cut(s)	411
BseNI	ACTGG	1 cut(s)	355
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	2 cut(s)	303, 562
BsgI	GTGCAG	1 cut(s)	302
Bsh1236I	CGCG	1 cut(s)	634
BshFI	GGCC	3 cut(s)	43, 198, 283
BshNI	GGYRCC	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	3 cut(s)	43, 198, 283
Bsp1286I	GDGCHC	2 cut(s)	190, 357
Bsp143I	GATC	2 cut(s)	214, 406
BspACI	CCGC	2 cut(s)	231, 234
BspANI	GGCC	3 cut(s)	43, 198, 283
BspFNI	CGCG	1 cut(s)	634
BspLI	GGNNCC	2 cut(s)	36, 42
BspPI	GGATC	1 cut(s)	414
BspT107I	GGYRCC	1 cut(s)	34
BsrBI	CCGCTC	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	355
BssECI	CCNNGG	2 cut(s)	38, 310
BssMI	GATC	2 cut(s)	214, 406
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	5 cut(s)	71, 112, 278, 323, 665
BstBAI	YACGTR	1 cut(s)	61
BstDSI	CCRYGG	1 cut(s)	310
BstF5I	GGATG	1 cut(s)	580
BstFNI	CGCG	1 cut(s)	634
BstKTI	GATC	2 cut(s)	217, 409
BstMBI	GATC	2 cut(s)	214, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstNI	CCWGG	1 cut(s)	285
BstNSI	RCATGY	2 cut(s)	473, 656
BstSCI	CCNGG	2 cut(s)	37, 283
BstUI	CGCG	1 cut(s)	634
BstV1I	GCAGC	2 cut(s)	303, 562
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BsuRI	GGCC	3 cut(s)	43, 198, 283
BtgI	CCRYGG	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	580
Cfr13I	GGNCC	2 cut(s)	41, 281
Csp6I	GTAC	2 cut(s)	35, 58
CviAII	CATG	2 cut(s)	470, 653
CviQI	GTAC	2 cut(s)	35, 58
DpnI	GATC	2 cut(s)	216, 408
DpnII	GATC	2 cut(s)	214, 406
DraI	TTTAAA	1 cut(s)	421
EaeI	YGGCCR	1 cut(s)	196
EciI	GGCGGA	1 cut(s)	220
Eco24I	GRGCYC	2 cut(s)	190, 357
Eco32I	GATATC	1 cut(s)	640
Eco57I	CTGAAG	1 cut(s)	545
EcoO109I	RGGNCCY	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	283
EcoRV	GATATC	1 cut(s)	640
EcoT38I	GRGCYC	2 cut(s)	190, 357
FaeI	CATG	2 cut(s)	473, 656
FaiI	YATR	9 cut(s)	290, 359, 461, 471, 534, 539, 594, 654, 661
FalI	AAGNNNNNCTT	2 cut(s)	458, 490
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	2 cut(s)	469, 652
Fnu4HI	GCNGC	3 cut(s)	234, 317, 551
FokI	GGATG	1 cut(s)	587
FriOI	GRGCYC	2 cut(s)	190, 357
Fsp4HI	GCNGC	3 cut(s)	234, 317, 551
GluI	GCNGC	3 cut(s)	234, 317, 551
GsuI	CTGGAG	1 cut(s)	137
HaeIII	GGCC	3 cut(s)	43, 198, 283
HapII	CCGG	1 cut(s)	38
Hin1II	CATG	2 cut(s)	473, 656
HinfI	GANTC	1 cut(s)	262
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	1 cut(s)	628
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	7 cut(s)	154, 185, 247, 256, 327, 396, 525
Hpy188III	TCNNGA	4 cut(s)	404, 436, 475, 496
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	3 cut(s)	71, 158, 212
HpyAV	CCTTC	4 cut(s)	200, 230, 261, 289
HpyCH4III	ACNGT	5 cut(s)	71, 112, 278, 323, 665
HpyCH4IV	ACGT	2 cut(s)	60, 210
HpyCH4V	TGCA	2 cut(s)	319, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
HpySE526I	ACGT	2 cut(s)	60, 210
Hsp92II	CATG	2 cut(s)	473, 656
KpnI	GGTACC	1 cut(s)	38
Kzo9I	GATC	2 cut(s)	214, 406
Lsp1109I	GCAGC	2 cut(s)	303, 562
LweI	GCATC	2 cut(s)	496, 565
MaeII	ACGT	2 cut(s)	60, 210
MaeIII	GTNAC	3 cut(s)	99, 145, 655
MalI	GATC	2 cut(s)	216, 408
MbiI	CCGCTC	1 cut(s)	236
MboI	GATC	2 cut(s)	214, 406
MboII	GAAGA	4 cut(s)	359, 512, 538, 554
MfeI	CAATTG	1 cut(s)	579
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	2 cut(s)	190, 357
MluCI	AATT	2 cut(s)	363, 579
MmeI	TCCRAC	2 cut(s)	177, 279
MnlI	CCTC	6 cut(s)	19, 128, 160, 176, 253, 567
MseI	TTAA	5 cut(s)	125, 300, 362, 420, 456
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	2 cut(s)	39, 285
MunI	CAATTG	1 cut(s)	579
MvaI	CCWGG	1 cut(s)	285
MvnI	CGCG	1 cut(s)	634
MwoI	GCNNNNNNNGC	1 cut(s)	81
NciI	CCSGG	1 cut(s)	39
NdeII	GATC	2 cut(s)	214, 406
NlaIII	CATG	2 cut(s)	473, 656
NlaIV	GGNNCC	2 cut(s)	36, 42
NmuCI	GTSAC	1 cut(s)	99
NspI	RCATGY	2 cut(s)	473, 656
PciI	ACATGT	1 cut(s)	652
PfeI	GAWTC	1 cut(s)	262
PkrI	GCNGC	3 cut(s)	235, 318, 552
Ppu21I	YACGTR	1 cut(s)	61
PscI	ACATGT	1 cut(s)	652
PshBI	ATTAAT	1 cut(s)	362
Psp6I	CCWGG	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	2 cut(s)	36, 42
PspPI	GGNCC	2 cut(s)	41, 281
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	2 cut(s)	36, 59
RsaNI	GTAC	2 cut(s)	35, 58
SaqAI	TTAA	5 cut(s)	125, 300, 362, 420, 456
SatI	GCNGC	3 cut(s)	234, 317, 551
Sau3AI	GATC	2 cut(s)	214, 406
Sau96I	GGNCC	2 cut(s)	41, 281
ScrFI	CCNGG	2 cut(s)	39, 285
SduI	GDGCHC	2 cut(s)	190, 357
SfaNI	GCATC	2 cut(s)	496, 565
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	2 cut(s)	363, 579
SsiI	CCGC	2 cut(s)	231, 234
StyD4I	CCNGG	2 cut(s)	37, 283
TaaI	ACNGT	5 cut(s)	71, 112, 278, 323, 665
TaiI	ACGT	2 cut(s)	63, 213
TaqI	TCGA	2 cut(s)	162, 559
TasI	AATT	2 cut(s)	363, 579
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	5 cut(s)	125, 300, 362, 420, 456
Tru9I	TTAA	5 cut(s)	125, 300, 362, 420, 456
TseFI	GTSAC	1 cut(s)	99
TseI	GCWGC	2 cut(s)	316, 550
Tsp45I	GTSAC	1 cut(s)	99
TspGWI	ACGGA	2 cut(s)	133, 299
VspI	ATTAAT	1 cut(s)	362
XceI	RCATGY	2 cut(s)	473, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.