Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007227

Physical Location & Seq

Genomic Coordinates Reverse (-)

7678749 .. 7684908

Gene Structure 6160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G100200.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGGAGGACCTCAAAGAGAGGCTGCTTCCGCCAAAAGTCCCAAAACCTGCATCAGCTATTAACCTTCGGGAGTCATCTTATCGACCAGCAGCCTTTGGAAGGCAACCCTTTCAAAGTGTGGATGTTCTGGGGCTGAAGAAGCGGGGCCAGGGCCTTCGGTCTTGGATTCGTGTTGATACGTATGGGAATTCTCAGATCATTGAAGTTGACAAGTTCACCATGATGCGTCGTTGTGATCTACCTGCCCGTGATCTACGCCTGCTTGATCCTCTATTTGTTTACCCTTCAACCATCCTTGGAAGAGAGAAAGCTATCGTTGTAAACCTAGAGCAGATTCGATGTATAATTACGGCCGATGAGGTTCTTCTTTTGAATTCACTTGATAGCTATGTATTGCAATATGTGGTGGAGCTTCAGAGAAGATTGACAACAAATGGGGTAGGTGATGTTTGGCAATCTGATGGTTCTGAATTGAGTCGGAGGAGGGGAAATAGAAATTTTGATAGTGTGTTTGGAAGCACATCTCCTGATTATTTGCCCTTTGAGTTTAGGGCCTTAGAAGTTGCTCTGGAGGCTGCCTGTAAATTTCTTGATTCTCAGGCAGCTGAATTAGAAATTGAAGCATATCCGTTACTAGATGAGCTCACGTCAAAGATCAGTACACTGAACTTGGAGCGCGCACGTCGATTGAAAAGTAGACTCCTTGCCTTGACTCGGAGAGTTCAGAAGGTTCGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGATATGGCTGAGATGTATCTCACTGACAAGAAAAGTCGTATGGAGTCATCGTTTTATGGTGATCAATCTGTGCTGGGGTACAGATCTACTGATGGTACATCTCTTTCTGCACCTGTTTCTCCTGTAGCTTCCCCTCCCGATGGCCGAAAGCTTGAGAAAAGCCTGAGCATTGCAAGGAGTCGACATGAAAGCATGAGAAGTTCAGATAGTACTACAGAGAGTATAGAAGAGCTTGAGATGCTGTTGGAAGCATACTTTGTTGTCATTGACAGCACCCTGAATAAGCTGACATCGTTGAAAGAGTACATTGATGACACAGAAGATTTCATAAACATTCAGCTGGATAATGTCCGAAACCAGCTGATCCAATTTGAGCTACTACTCACAACTGCAACATTTGTTGTTGCTATATTTGGGGTCGTAGCAGGAATCTTTGGGATGAACTTCACAATACCTTTGTTTGATAACGCTGGTGCATTTAAGTGGGTACTTATAATTACAGGTCAATGGAGGGCTGTTGGTCGGCAAAGGATGGAGCAAAGGTACGAACATTCAACAATAGCTCTTTGTGCCACTGCCAATGCTTGCTGCGTTGTTCGCCATCAGCATCAAGTAATACGTTTGATTATGGTTGGATATGGTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

472

Amino Acids

53.39

Weight (kDa)

5.5

Isoelectric Point (pI)

49.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16010 AT1G16010 AT1G16010 AT1G80900 AT1G80900
fragaria_vesca	FvH4_6g28490
malus_domestica	MD09G1225700.v1.1 MD17G1224500.v1.1
prunus_persica	Prupe.3G100200_v2.0.a1 Prupe.3G100200_v2.0.a1 Prupe.3G100200_v2.0.a1 Prupe.3G100200_v2.0.a1 Prupe.3G100200_v2.0.a1
pyrus_communis	pycom09g14520 pycom17g22820
rosa_chinensis	RchiOBHm_Chr2g0132741
rosa_laevigata	RLG00000019274
rosa_multiflora	Rmu_sc0004972.1_g000001 Rmu_ssc0000074.1_g000006
rosa_roxburghii	Rroxscaffold_2G00111690
rosa_rugosa	Rorug02G0307000 Rorug02G0307000
rosa_samantha	Rh2AG359600 Rh2DG382500
rosa_wichuraiana	Rw2G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1262
Acc36I	ACCTGC	2 cut(s)	55, 250
AccI	GTMKAC	2 cut(s)	697, 949
AccII	CGCG	1 cut(s)	678
AciI	CCGC	2 cut(s)	29, 142
AclWI	GGATC	2 cut(s)	260, 1126
AcoI	YGGCCR	2 cut(s)	351, 910
AcsI	RAATTY	4 cut(s)	187, 373, 496, 584
AcuI	CTGAAG	2 cut(s)	155, 398
AfaI	GTAC	7 cut(s)	661, 848, 865, 979, 1073, 1257, 1313
AfiI	CCNNNNNNNGG	3 cut(s)	99, 714, 908
AgsI	TTSAA	8 cut(s)	113, 203, 288, 373, 620, 691, 1066, 1323
AjiI	CACGTC	2 cut(s)	648, 683
AjnI	CCWGG	1 cut(s)	147
Alw21I	GWGCWC	1 cut(s)	645
AlwI	GGATC	2 cut(s)	260, 1126
AoxI	GGCC	5 cut(s)	145, 151, 351, 552, 910
ApeKI	GCWGC	6 cut(s)	22, 89, 575, 602, 748, 1356
ApoI	RAATTY	4 cut(s)	187, 373, 496, 584
AspLEI	GCGC	2 cut(s)	678, 680
AspS9I	GGNCC	4 cut(s)	7, 145, 151, 552
AsuHPI	GGTGA	3 cut(s)	208, 455, 839
AvaII	GGWCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	645
Bbv12I	GWGCWC	1 cut(s)	645
BbvI	GCAGC	6 cut(s)	9, 101, 562, 614, 760, 1343
BccI	CCATC	7 cut(s)	299, 455, 758, 854, 902, 1294, 1377
BceAI	ACGGC	1 cut(s)	366
BciT130I	CCWGG	1 cut(s)	149
BclI	TGATCA	1 cut(s)	829
BfaI	CTAG	2 cut(s)	326, 635
BfmI	CTRYAG	2 cut(s)	891, 981
BfuAI	ACCTGC	2 cut(s)	55, 250
BglII	AGATCT	1 cut(s)	851
BisI	GCNGC	6 cut(s)	23, 90, 576, 603, 749, 1357
BlsI	GCNGC	6 cut(s)	24, 91, 577, 604, 750, 1358
BmcAI	AGTACT	1 cut(s)	979
Bme1390I	CCNGG	1 cut(s)	149
Bme18I	GGWCC	1 cut(s)	7
BmgBI	CACGTC	2 cut(s)	648, 683
BmgT120I	GGNCC	4 cut(s)	7, 145, 151, 552
BmiI	GGNNCC	1 cut(s)	146
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	4 cut(s)	59, 213, 996, 1384
BpmI	CTGGAG	1 cut(s)	590
Bpu10I	CCTNAGC	1 cut(s)	932
BpuEI	CTTGAG	2 cut(s)	941, 1022
BsaAI	YACGTR	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	148, 295
BsaXI	ACNNNNNCTCC	4 cut(s)	803, 833, 1295, 1325
Bsc4I	CCNNNNNNNGG	3 cut(s)	99, 714, 908
Bse3DI	GCAATG	1 cut(s)	936
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	2 cut(s)	148, 295
BseGI	GGATG	6 cut(s)	127, 291, 742, 763, 1212, 1305
BseLI	CCNNNNNNNGG	3 cut(s)	99, 714, 908
BseMI	GCAATG	1 cut(s)	936
BseMII	CTCAG	4 cut(s)	206, 611, 768, 923
BsePI	GCGCGC	1 cut(s)	676
BseRI	GAGGAG	1 cut(s)	496
BseX3I	CGGCCG	1 cut(s)	351
BseXI	GCAGC	6 cut(s)	9, 101, 562, 614, 760, 1343
BseYI	CCCAGC	1 cut(s)	841
BsgI	GTGCAG	1 cut(s)	861
Bsh1236I	CGCG	1 cut(s)	678
Bsh1285I	CGRYCG	1 cut(s)	354
BshFI	GGCC	5 cut(s)	147, 153, 353, 554, 912
BsiEI	CGRYCG	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	645
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	3 cut(s)	99, 714, 908
BsmFI	GGGAC	1 cut(s)	23
BsnI	GGCC	5 cut(s)	147, 153, 353, 554, 912
Bsp1286I	GDGCHC	1 cut(s)	645
Bsp143I	GATC	8 cut(s)	195, 235, 250, 265, 654, 829, 851, 1131
BspACI	CCGC	2 cut(s)	29, 142
BspANI	GGCC	5 cut(s)	147, 153, 353, 554, 912
BspCNI	CTCAG	4 cut(s)	205, 610, 769, 924
BspFNI	CGCG	1 cut(s)	678
BspLI	GGNNCC	1 cut(s)	146
BspMI	ACCTGC	2 cut(s)	55, 250
BspPI	GGATC	2 cut(s)	260, 1126
BspQI	GCTCTTC	1 cut(s)	990
BsrDI	GCAATG	1 cut(s)	936
BssECI	CCNNGG	2 cut(s)	148, 295
BssHII	GCGCGC	1 cut(s)	676
BssMI	GATC	8 cut(s)	195, 235, 250, 265, 654, 829, 851, 1131
BssT1I	CCWWGG	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	149
Bst6I	CTCTTC	2 cut(s)	295, 990
BstBAI	YACGTR	1 cut(s)	180
BstC8I	GCNNGC	3 cut(s)	260, 678, 1354
BstDEI	CTNAG	5 cut(s)	192, 556, 597, 777, 932
BstENI	CCTNNNNNAGG	1 cut(s)	97
BstF5I	GGATG	6 cut(s)	127, 291, 742, 763, 1212, 1305
BstFNI	CGCG	1 cut(s)	678
BstHHI	GCGC	2 cut(s)	678, 680
BstKTI	GATC	8 cut(s)	198, 238, 253, 268, 657, 832, 854, 1134
BstMBI	GATC	8 cut(s)	195, 235, 250, 265, 654, 829, 851, 1131
BstMCI	CGRYCG	1 cut(s)	354
BstMWI	GCNNNNNNNGC	6 cut(s)	28, 139, 572, 1006, 1337, 1365
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	147
BstSFI	CTRYAG	2 cut(s)	891, 981
BstSNI	TACGTA	1 cut(s)	180
BstUI	CGCG	1 cut(s)	678
BstV1I	GCAGC	6 cut(s)	9, 101, 562, 614, 760, 1343
BstX2I	RGATCY	1 cut(s)	851
BstYI	RGATCY	1 cut(s)	851
BstZI	CGGCCG	1 cut(s)	351
BsuRI	GGCC	5 cut(s)	147, 153, 353, 554, 912
BtrI	CACGTC	2 cut(s)	648, 683
BtsCI	GGATG	6 cut(s)	127, 291, 742, 763, 1212, 1305
BtsI	GCAGTG	1 cut(s)	1341
BtsIMutI	CAGTG	3 cut(s)	662, 789, 1341
BveI	ACCTGC	2 cut(s)	55, 250
Cac8I	GCNNGC	3 cut(s)	260, 678, 1354
CfoI	GCGC	2 cut(s)	678, 680
Cfr13I	GGNCC	4 cut(s)	7, 145, 151, 552
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	7 cut(s)	660, 847, 864, 978, 1072, 1256, 1312
CviAII	CATG	4 cut(s)	220, 754, 953, 961
CviQI	GTAC	7 cut(s)	660, 847, 864, 978, 1072, 1256, 1312
DdeI	CTNAG	5 cut(s)	192, 556, 597, 777, 932
DpnI	GATC	8 cut(s)	197, 237, 252, 267, 656, 831, 853, 1133
DpnII	GATC	8 cut(s)	195, 235, 250, 265, 654, 829, 851, 1131
EaeI	YGGCCR	2 cut(s)	351, 910
EagI	CGGCCG	1 cut(s)	351
Eam1104I	CTCTTC	2 cut(s)	295, 990
EarI	CTCTTC	2 cut(s)	295, 990
EciI	GGCGGA	1 cut(s)	18
Ecl136II	GAGCTC	1 cut(s)	643
EclXI	CGGCCG	1 cut(s)	351
Eco105I	TACGTA	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	645
Eco47I	GGWCC	1 cut(s)	7
Eco52I	CGGCCG	1 cut(s)	351
Eco53kI	GAGCTC	1 cut(s)	643
Eco57I	CTGAAG	2 cut(s)	155, 398
EcoICRI	GAGCTC	1 cut(s)	643
EcoNI	CCTNNNNNAGG	1 cut(s)	97
EcoO109I	RGGNCCY	3 cut(s)	7, 151, 552
EcoRI	GAATTC	2 cut(s)	187, 373
EcoRII	CCWGG	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	645
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	4 cut(s)	223, 757, 956, 964
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	4 cut(s)	219, 753, 952, 960
FauI	CCCGC	1 cut(s)	135
FbaI	TGATCA	1 cut(s)	829
FblI	GTMKAC	2 cut(s)	697, 949
Fnu4HI	GCNGC	6 cut(s)	23, 90, 576, 603, 749, 1357
FokI	GGATG	6 cut(s)	134, 278, 749, 770, 1219, 1312
FriOI	GRGCYC	1 cut(s)	645
Fsp4HI	GCNGC	6 cut(s)	23, 90, 576, 603, 749, 1357
FspBI	CTAG	2 cut(s)	326, 635
GlaI	GCGC	2 cut(s)	677, 679
GluI	GCNGC	6 cut(s)	23, 90, 576, 603, 749, 1357
GsaI	CCCAGC	1 cut(s)	845
GsuI	CTGGAG	1 cut(s)	590
HaeIII	GGCC	5 cut(s)	147, 153, 353, 554, 912
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	2 cut(s)	678, 680
Hin1II	CATG	4 cut(s)	223, 757, 956, 964
Hin6I	GCGC	2 cut(s)	676, 678
HinP1I	GCGC	2 cut(s)	676, 678
HincII	GTYRAC	2 cut(s)	208, 950
HindII	GTYRAC	2 cut(s)	208, 950
HindIII	AAGCTT	1 cut(s)	917
HphI	GGTGA	3 cut(s)	208, 455, 839
Hpy166II	GTNNAC	7 cut(s)	208, 216, 280, 322, 662, 698, 950
Hpy188I	TCNGA	9 cut(s)	195, 417, 460, 469, 480, 717, 726, 973, 1121
Hpy188III	TCNNGA	6 cut(s)	68, 527, 569, 590, 734, 905
Hpy8I	GTNNAC	7 cut(s)	208, 216, 280, 322, 662, 698, 950
Hpy99I	CGWCG	2 cut(s)	231, 687
HpyAV	CCTTC	5 cut(s)	74, 93, 164, 294, 721
HpyCH4IV	ACGT	4 cut(s)	179, 647, 682, 1387
HpyCH4V	TGCA	6 cut(s)	50, 397, 878, 941, 1160, 1244
HpyF10VI	GCNNNNNNNGC	6 cut(s)	28, 139, 572, 1006, 1337, 1365
HpyF3I	CTNAG	5 cut(s)	192, 556, 597, 777, 932
HpySE526I	ACGT	4 cut(s)	179, 647, 682, 1387
Hsp92II	CATG	4 cut(s)	223, 757, 956, 964
HspAI	GCGC	2 cut(s)	676, 678
Ksp22I	TGATCA	1 cut(s)	829
Kzo9I	GATC	8 cut(s)	195, 235, 250, 265, 654, 829, 851, 1131
LguI	GCTCTTC	1 cut(s)	990
LmnI	GCTCC	3 cut(s)	409, 673, 1303
Lsp1109I	GCAGC	6 cut(s)	9, 101, 562, 614, 760, 1343
LweI	GCATC	4 cut(s)	59, 213, 996, 1384
MaeI	CTAG	2 cut(s)	326, 635
MaeII	ACGT	4 cut(s)	179, 647, 682, 1387
MaeIII	GTNAC	1 cut(s)	630
MalI	GATC	8 cut(s)	197, 237, 252, 267, 656, 831, 853, 1133
MboI	GATC	8 cut(s)	195, 235, 250, 265, 654, 829, 851, 1131
MboII	GAAGA	6 cut(s)	148, 312, 356, 432, 1007, 1100
MflI	RGATCY	1 cut(s)	851
MhlI	GDGCHC	1 cut(s)	645
MlyI	GAGTC	6 cut(s)	80, 484, 693, 706, 821, 955
MmeI	TCCRAC	3 cut(s)	458, 993, 1381
MnlI	CCTC	9 cut(s)	12, 20, 279, 352, 474, 477, 565, 912, 1272
MseI	TTAA	2 cut(s)	60, 1248
MslI	CAYNNNNRTG	2 cut(s)	221, 1249
MspA1I	CMGCKG	3 cut(s)	605, 1108, 1129
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
MvnI	CGCG	1 cut(s)	678
MwoI	GCNNNNNNNGC	6 cut(s)	28, 139, 572, 1006, 1337, 1365
NdeII	GATC	8 cut(s)	195, 235, 250, 265, 654, 829, 851, 1131
NlaIII	CATG	4 cut(s)	223, 757, 956, 964
NlaIV	GGNNCC	1 cut(s)	146
PauI	GCGCGC	1 cut(s)	676
PciSI	GCTCTTC	1 cut(s)	990
PfeI	GAWTC	4 cut(s)	166, 334, 593, 1197
PkrI	GCNGC	6 cut(s)	24, 91, 577, 604, 750, 1358
PleI	GAGTC	6 cut(s)	79, 483, 693, 706, 820, 954
PpsI	GAGTC	6 cut(s)	79, 483, 693, 706, 820, 954
Ppu21I	YACGTR	1 cut(s)	180
PpuMI	RGGWCCY	1 cut(s)	7
PsiI	TTATAA	1 cut(s)	1262
Psp124BI	GAGCTC	1 cut(s)	645
Psp5II	RGGWCCY	1 cut(s)	7
Psp6I	CCWGG	1 cut(s)	147
PspFI	CCCAGC	1 cut(s)	841
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	146
PspPI	GGNCC	4 cut(s)	7, 145, 151, 552
PspPPI	RGGWCCY	1 cut(s)	7
PsuI	RGATCY	1 cut(s)	851
PteI	GCGCGC	1 cut(s)	676
PvuII	CAGCTG	3 cut(s)	605, 1108, 1129
RsaI	GTAC	7 cut(s)	661, 848, 865, 979, 1073, 1257, 1313
RsaNI	GTAC	7 cut(s)	660, 847, 864, 978, 1072, 1256, 1312
RseI	CAYNNNNRTG	2 cut(s)	221, 1249
SacI	GAGCTC	1 cut(s)	645
SalI	GTCGAC	1 cut(s)	948
SapI	GCTCTTC	1 cut(s)	990
SaqAI	TTAA	2 cut(s)	60, 1248
SatI	GCNGC	6 cut(s)	23, 90, 576, 603, 749, 1357
Sau3AI	GATC	8 cut(s)	195, 235, 250, 265, 654, 829, 851, 1131
Sau96I	GGNCC	4 cut(s)	7, 145, 151, 552
ScaI	AGTACT	1 cut(s)	979
SchI	GAGTC	6 cut(s)	80, 484, 693, 706, 821, 955
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	645
SfaNI	GCATC	4 cut(s)	59, 213, 996, 1384
SfcI	CTRYAG	2 cut(s)	891, 981
SinI	GGWCC	1 cut(s)	7
SmiMI	CAYNNNNRTG	2 cut(s)	221, 1249
SmlI	CTYRAG	2 cut(s)	920, 1001
SmoI	CTYRAG	2 cut(s)	920, 1001
SnaBI	TACGTA	1 cut(s)	180
SsiI	CCGC	2 cut(s)	29, 142
SspMI	CTAG	2 cut(s)	326, 635
SstI	GAGCTC	1 cut(s)	645
StyD4I	CCNGG	1 cut(s)	147
StyI	CCWWGG	1 cut(s)	295
TaiI	ACGT	4 cut(s)	182, 650, 685, 1390
TaqI	TCGA	4 cut(s)	82, 337, 685, 949
TaqII	GACCGA	1 cut(s)	147
TatI	WGTACW	3 cut(s)	659, 977, 1071
TfiI	GAWTC	4 cut(s)	166, 334, 593, 1197
Tru1I	TTAA	2 cut(s)	60, 1248
Tru9I	TTAA	2 cut(s)	60, 1248
TscAI	CASTG	3 cut(s)	669, 796, 1348
TseI	GCWGC	6 cut(s)	22, 89, 575, 602, 748, 1356
TspDTI	ATGAA	4 cut(s)	753, 969, 1084, 1223
TspGWI	ACGGA	1 cut(s)	618
TspRI	CASTG	3 cut(s)	669, 796, 1348
VpaK11BI	GGWCC	1 cut(s)	7
XagI	CCTNNNNNAGG	1 cut(s)	97
XapI	RAATTY	4 cut(s)	187, 373, 496, 584
XmiI	GTMKAC	2 cut(s)	697, 949
XspI	CTAG	2 cut(s)	326, 635
ZrmI	AGTACT	1 cut(s)	979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.