Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007227

Physical Location & Seq

Genomic Coordinates Forward (+)

47323229 .. 47327918

Gene Structure 4690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G029250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGATGACCTCAAGGAGCGGCTGCTTCCGCCGAAAGTTCCAAAACCTGCATCTGCTATAAACCTTCGGGAATCATCTTATCGGACATCGGCTTTTGGAAGGCAACCTTTTCACGGTGTGGATGTTCTGGGGCTGAAGAAGCGGGGACAGGGCCTTCGGTCCTGGATTCGTGTTGATACGTCTGGGAATTCTCAGATTATTGAGGTTGACAAGTTCACCATGATGCGACGTTGTGATCTACCTGCCCGTGATTTGCGCCTGCTTGATCCTCTATTTGTGTACCCCTCAACTATCCTTGGCAGAGAGAAGGCTATTGTAGTAAATCTAGAGCAGATTCGTTGTATTATCACGGCTGATGAGGTTCTGCTTTTGAATTCCCTTGATAACTATGTATTGCAGTATGTGGTGGAGCTACAGAAAAGGTTGACAACAAATGGTGTAGGTGATGTTTGGCAGTCTGATGGTTCTGACATGAGCAGGAGGAGGGGAGGTAGAAATTTTGATAATGTGTTTGGGAGCACATCTCCTGACTATTTGCCCTTTGAATTTAGGGCTTTAGAAGTTGCTCTGGAGGCTGCCTGTACATTCCTTGATTCTCAGGCAGCTGAACTGGAAATTGAAGCTTATCCATTACTTGATGAGCTTACGTCAAAAATCAGTACACTGAACTTGGAACGTGCTCGACGATTGAAAAGCAGACTTCTTGCCCTGACCCGAAGAGTTCAGAAGGTTCGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGATATGGCTGAGATGTATCTCACTGAGAAGAAAAGTCGTATGGAGGCATCATTTTATGGTGAACAATCTGTGATGGGGTATAGATCTAATGATGGTATATCTCTTTCTGCTCCTGTTTCCCCTGTATCTTCACCTCCCGATGGTCGAAAACTTGAGAAAAGCTTGAGTATTGCAAGGAGTCGACATGAAAGCATGAGAAGTTCAGAAAGTGCTACAGAGAGTATAGAAGAGCTTGAGATGCTGCTGGAAGCATACTTTGTTGTCATTGATAGCACCCTGAATAAGCTGACTTCGTTGAAAGAATACATTGATGATACAGAAGATTTCATTAACATTCAGCTGGACAATGTCCGTAATCAGCTGATTCAATTTGAACTGCTACTGACAACTGCAACTTTTGTGGTTGCGATATTCGGAGTTGTAGCAGGAATCTTTGGCATGAACTTTGAAATCGCATTGTTTGATGACCCTGCCGCGTTTAAGTGGGTACTTGTAATCACAGGAGTAACTGGCATCTGTATATTTTCTGCATTTGTGTGGTTCTTCAAGTATAGAAGACTCATGCCACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

446

Amino Acids

50.56

Weight (kDa)

5.12

Isoelectric Point (pI)

52.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	61 - 269	5.8e-25	Magnesium transporter MRS2-like
MRS2-like	PF22099	325 - 374	1.2e-06	Magnesium transporter MRS2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16010 AT1G16010 AT1G16010 AT1G80900 AT1G80900
fragaria_vesca	FvH4_6g28490
malus_domestica	MD09G1225700.v1.1 MD17G1224500.v1.1
prunus_persica	Prupe.3G100200_v2.0.a1 Prupe.3G100200_v2.0.a1 Prupe.3G100200_v2.0.a1 Prupe.3G100200_v2.0.a1 Prupe.3G100200_v2.0.a1
pyrus_communis	pycom09g14520 pycom17g22820
rosa_chinensis	RchiOBHm_Chr2g0132741
rosa_laevigata	RLG00000019274
rosa_multiflora	Rmu_sc0004972.1_g000001 Rmu_ssc0000074.1_g000006
rosa_roxburghii	Rroxscaffold_2G00111690
rosa_rugosa	Rorug02G0307000 Rorug02G0307000
rosa_samantha	Rh2AG359600 Rh2DG382500
rosa_wichuraiana	Rw2G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	55, 250
AccBSI	CCGCTC	1 cut(s)	19
AccI	GTMKAC	1 cut(s)	949
AccII	CGCG	1 cut(s)	1244
AciI	CCGC	4 cut(s)	19, 29, 142, 1242
AclWI	GGATC	1 cut(s)	260
AcsI	RAATTY	4 cut(s)	187, 373, 496, 545
AcuI	CTGAAG	1 cut(s)	155
AdeI	CACNNNGTG	1 cut(s)	118
AfaI	GTAC	4 cut(s)	281, 583, 661, 1257
AfiI	CCNNNNNNNGG	2 cut(s)	113, 908
AgsI	TTSAA	9 cut(s)	373, 545, 620, 691, 1066, 1136, 1142, 1217, 1315
AjnI	CCWGG	1 cut(s)	161
Alw21I	GWGCWC	2 cut(s)	521, 682
AlwI	GGATC	1 cut(s)	260
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	5 cut(s)	22, 575, 602, 748, 1009
ApoI	RAATTY	4 cut(s)	187, 373, 496, 545
ArsI	GACNNNNNNTTYG	2 cut(s)	138, 170
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	2 cut(s)	151, 159
AsuHPI	GGTGA	4 cut(s)	208, 455, 839, 891
AvaII	GGWCC	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	1330
Bbv12I	GWGCWC	2 cut(s)	521, 682
BbvI	GCAGC	5 cut(s)	9, 562, 614, 760, 996
BccI	CCATC	5 cut(s)	455, 758, 835, 854, 902
BceAI	ACGGC	1 cut(s)	366
BciT130I	CCWGG	1 cut(s)	163
BfaI	CTAG	1 cut(s)	326
BfmI	CTRYAG	3 cut(s)	413, 981, 1337
BfuAI	ACCTGC	2 cut(s)	55, 250
BglII	AGATCT	1 cut(s)	851
BisI	GCNGC	7 cut(s)	20, 23, 576, 603, 749, 1010, 1242
BlsI	GCNGC	7 cut(s)	21, 24, 577, 604, 750, 1011, 1243
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	2 cut(s)	151, 159
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	5 cut(s)	59, 213, 824, 996, 1290
BpiI	GAAGAC	1 cut(s)	1330
BplI	GAGNNNNNCTC	2 cut(s)	508, 540
BpmI	CTGGAG	1 cut(s)	590
BpuEI	CTTGAG	3 cut(s)	941, 952, 1022
BsaJI	CCNNGG	1 cut(s)	295
BsaXI	ACNNNNNCTCC	2 cut(s)	475, 505
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 908
Bse1I	ACTGG	2 cut(s)	615, 1282
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	4 cut(s)	10, 127, 742, 763
BseLI	CCNNNNNNNGG	2 cut(s)	113, 908
BseMII	CTCAG	4 cut(s)	206, 611, 768, 783
BseNI	ACTGG	2 cut(s)	615, 1282
BseRI	GAGGAG	1 cut(s)	496
BseXI	GCAGC	5 cut(s)	9, 562, 614, 760, 996
Bsh1236I	CGCG	1 cut(s)	1244
BshFI	GGCC	1 cut(s)	153
BsiHKAI	GWGCWC	2 cut(s)	521, 682
BslFI	GGGAC	1 cut(s)	159
BslI	CCNNNNNNNGG	2 cut(s)	113, 908
BsmFI	GGGAC	1 cut(s)	159
BsnI	GGCC	1 cut(s)	153
Bsp1286I	GDGCHC	2 cut(s)	521, 682
Bsp1407I	TGTACA	1 cut(s)	581
Bsp143I	GATC	3 cut(s)	235, 265, 851
BspACI	CCGC	4 cut(s)	19, 29, 142, 1242
BspANI	GGCC	1 cut(s)	153
BspCNI	CTCAG	4 cut(s)	205, 610, 769, 784
BspFNI	CGCG	1 cut(s)	1244
BspMI	ACCTGC	2 cut(s)	55, 250
BspPI	GGATC	1 cut(s)	260
BspQI	GCTCTTC	1 cut(s)	990
BsrBI	CCGCTC	1 cut(s)	19
BsrGI	TGTACA	1 cut(s)	581
BsrI	ACTGG	2 cut(s)	615, 1282
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	3 cut(s)	235, 265, 851
BssT1I	CCWWGG	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	1 cut(s)	116
Bst6I	CTCTTC	2 cut(s)	712, 990
BstAUI	TGTACA	1 cut(s)	581
BstC8I	GCNNGC	1 cut(s)	260
BstDEI	CTNAG	4 cut(s)	192, 597, 777, 792
BstF5I	GGATG	4 cut(s)	10, 127, 742, 763
BstFNI	CGCG	1 cut(s)	1244
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	3 cut(s)	238, 268, 854
BstMBI	GATC	3 cut(s)	235, 265, 851
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 139, 572, 1006
BstNI	CCWGG	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	161
BstSFI	CTRYAG	3 cut(s)	413, 981, 1337
BstUI	CGCG	1 cut(s)	1244
BstV1I	GCAGC	5 cut(s)	9, 562, 614, 760, 996
BstV2I	GAAGAC	1 cut(s)	1330
BstX2I	RGATCY	1 cut(s)	851
BstYI	RGATCY	1 cut(s)	851
BsuRI	GGCC	1 cut(s)	153
BtsCI	GGATG	4 cut(s)	10, 127, 742, 763
BtsIMutI	CAGTG	2 cut(s)	662, 789
BveI	ACCTGC	2 cut(s)	55, 250
Cac8I	GCNNGC	1 cut(s)	260
CfoI	GCGC	1 cut(s)	258
Cfr13I	GGNCC	2 cut(s)	151, 159
Csp6I	GTAC	4 cut(s)	280, 582, 660, 1256
CspCI	CAANNNNNGTGG	2 cut(s)	1149, 1184
CviAII	CATG	7 cut(s)	220, 472, 754, 953, 961, 1207, 1330
CviQI	GTAC	4 cut(s)	280, 582, 660, 1256
DdeI	CTNAG	4 cut(s)	192, 597, 777, 792
DpnI	GATC	3 cut(s)	237, 267, 853
DpnII	GATC	3 cut(s)	235, 265, 851
DraIII	CACNNNGTG	1 cut(s)	118
Eam1104I	CTCTTC	2 cut(s)	712, 990
EarI	CTCTTC	2 cut(s)	712, 990
EciI	GGCGGA	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	155
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRI	GAATTC	2 cut(s)	187, 373
EcoRII	CCWGG	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	7 cut(s)	223, 475, 757, 956, 964, 1210, 1333
FalI	AAGNNNNNCTT	2 cut(s)	91, 123
FaqI	GGGAC	1 cut(s)	159
FatI	CATG	7 cut(s)	219, 471, 753, 952, 960, 1206, 1329
FauI	CCCGC	1 cut(s)	135
FblI	GTMKAC	1 cut(s)	949
Fnu4HI	GCNGC	7 cut(s)	20, 23, 576, 603, 749, 1010, 1242
FokI	GGATG	4 cut(s)	17, 134, 749, 770
Fsp4HI	GCNGC	7 cut(s)	20, 23, 576, 603, 749, 1010, 1242
FspBI	CTAG	1 cut(s)	326
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	7 cut(s)	20, 23, 576, 603, 749, 1010, 1242
GsuI	CTGGAG	1 cut(s)	590
HaeIII	GGCC	1 cut(s)	153
HhaI	GCGC	1 cut(s)	258
Hin1II	CATG	7 cut(s)	223, 475, 757, 956, 964, 1210, 1333
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HincII	GTYRAC	3 cut(s)	208, 426, 950
HindII	GTYRAC	3 cut(s)	208, 426, 950
HindIII	AAGCTT	2 cut(s)	621, 928
HinfI	GANTC	8 cut(s)	71, 166, 334, 593, 946, 1132, 1197, 1326
HphI	GGTGA	4 cut(s)	208, 455, 839, 891
Hpy166II	GTNNAC	7 cut(s)	208, 216, 280, 426, 662, 830, 950
Hpy188I	TCNGA	7 cut(s)	84, 195, 460, 469, 726, 973, 1184
Hpy188III	TCNNGA	6 cut(s)	68, 326, 527, 569, 734, 905
Hpy8I	GTNNAC	7 cut(s)	208, 216, 280, 426, 662, 830, 950
Hpy99I	CGWCG	2 cut(s)	231, 687
HpyAV	CCTTC	5 cut(s)	74, 93, 164, 301, 721
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4IV	ACGT	4 cut(s)	179, 229, 647, 676
HpyCH4V	TGCA	5 cut(s)	50, 397, 941, 1160, 1298
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 139, 572, 1006
HpyF3I	CTNAG	4 cut(s)	192, 597, 777, 792
HpySE526I	ACGT	4 cut(s)	179, 229, 647, 676
Hsp92II	CATG	7 cut(s)	223, 475, 757, 956, 964, 1210, 1333
HspAI	GCGC	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	235, 265, 851
LguI	GCTCTTC	1 cut(s)	990
LmnI	GCTCC	4 cut(s)	16, 409, 516, 883
Lsp1109I	GCAGC	5 cut(s)	9, 562, 614, 760, 996
LweI	GCATC	5 cut(s)	59, 213, 824, 996, 1290
MaeI	CTAG	1 cut(s)	326
MaeII	ACGT	4 cut(s)	179, 229, 647, 676
MaeIII	GTNAC	1 cut(s)	1273
MalI	GATC	3 cut(s)	237, 267, 853
MbiI	CCGCTC	1 cut(s)	19
MboI	GATC	3 cut(s)	235, 265, 851
MboII	GAAGA	8 cut(s)	148, 729, 808, 888, 1007, 1100, 1303, 1335
MflI	RGATCY	1 cut(s)	851
MhlI	GDGCHC	2 cut(s)	521, 682
MluCI	AATT	6 cut(s)	187, 373, 496, 545, 615, 1136
MlyI	GAGTC	2 cut(s)	955, 1320
MseI	TTAA	2 cut(s)	1098, 1248
MslI	CAYNNNNRTG	2 cut(s)	221, 1303
MspA1I	CMGCKG	3 cut(s)	605, 1108, 1129
MspR9I	CCNGG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	163
MvnI	CGCG	1 cut(s)	1244
MwoI	GCNNNNNNNGC	4 cut(s)	28, 139, 572, 1006
NdeII	GATC	3 cut(s)	235, 265, 851
NlaIII	CATG	7 cut(s)	223, 475, 757, 956, 964, 1210, 1333
PciSI	GCTCTTC	1 cut(s)	990
PcsI	WCGNNNNNNNCGW	1 cut(s)	682
PfeI	GAWTC	6 cut(s)	71, 166, 334, 593, 1132, 1197
PflFI	GACNNNGTC	1 cut(s)	1115
PfoI	TCCNGGA	1 cut(s)	161
PkrI	GCNGC	7 cut(s)	21, 24, 577, 604, 750, 1011, 1243
PleI	GAGTC	2 cut(s)	954, 1320
PpsI	GAGTC	2 cut(s)	954, 1320
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspPI	GGNCC	2 cut(s)	151, 159
PsuI	RGATCY	1 cut(s)	851
PsyI	GACNNNGTC	1 cut(s)	1115
PvuII	CAGCTG	3 cut(s)	605, 1108, 1129
RsaI	GTAC	4 cut(s)	281, 583, 661, 1257
RsaNI	GTAC	4 cut(s)	280, 582, 660, 1256
RseI	CAYNNNNRTG	2 cut(s)	221, 1303
SalI	GTCGAC	1 cut(s)	948
SapI	GCTCTTC	1 cut(s)	990
SaqAI	TTAA	2 cut(s)	1098, 1248
SatI	GCNGC	7 cut(s)	20, 23, 576, 603, 749, 1010, 1242
Sau3AI	GATC	3 cut(s)	235, 265, 851
Sau96I	GGNCC	2 cut(s)	151, 159
SchI	GAGTC	2 cut(s)	955, 1320
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	2 cut(s)	521, 682
SfaNI	GCATC	5 cut(s)	59, 213, 824, 996, 1290
SfcI	CTRYAG	3 cut(s)	413, 981, 1337
SinI	GGWCC	1 cut(s)	159
SmiMI	CAYNNNNRTG	2 cut(s)	221, 1303
SmlI	CTYRAG	4 cut(s)	11, 920, 931, 1001
SmoI	CTYRAG	4 cut(s)	11, 920, 931, 1001
Sse9I	AATT	6 cut(s)	187, 373, 496, 545, 615, 1136
SsiI	CCGC	4 cut(s)	19, 29, 142, 1242
SspMI	CTAG	1 cut(s)	326
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	295
TaaI	ACNGT	1 cut(s)	116
TaiI	ACGT	4 cut(s)	182, 232, 650, 679
TaqI	TCGA	3 cut(s)	682, 913, 949
TaqII	GACCGA	1 cut(s)	147
TasI	AATT	6 cut(s)	187, 373, 496, 545, 615, 1136
TatI	WGTACW	2 cut(s)	581, 659
TauI	GCSGC	2 cut(s)	22, 1244
TfiI	GAWTC	6 cut(s)	71, 166, 334, 593, 1132, 1197
Tru1I	TTAA	2 cut(s)	1098, 1248
Tru9I	TTAA	2 cut(s)	1098, 1248
TscAI	CASTG	2 cut(s)	669, 796
TseI	GCWGC	5 cut(s)	22, 575, 602, 748, 1009
TspDTI	ATGAA	4 cut(s)	753, 969, 1084, 1223
TspGWI	ACGGA	1 cut(s)	1109
TspRI	CASTG	2 cut(s)	669, 796
Tth111I	GACNNNGTC	1 cut(s)	1115
VpaK11BI	GGWCC	1 cut(s)	159
XapI	RAATTY	4 cut(s)	187, 373, 496, 545
XbaI	TCTAGA	1 cut(s)	325
XmiI	GTMKAC	1 cut(s)	949
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.