Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007227

Physical Location & Seq

Genomic Coordinates Reverse (-)

36396935 .. 36400727

Gene Structure 3793 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00111690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGATGACCTCAAGGAGCGGCTGCTTCCGCCGAAAGTTCCAAAACCTGCATCTGCTATAAATCTTCGGGAATCATCTTATCGGACATCGGCCTTTGGAAGGCAACCTTTTCACGGCATTATTGAGGTTGACAAGTTCACCATGATGCGGCGTTGTGATCTACCTGCCCGTGATTTACGCCTGCTTGATCCTCTATTTGTGTACCCCTCAACTATCCTTGGCAGAGAGAAGGCTATTGTAGTAAATCTAGAGCAGATTCGCTGTATTATCACGGCTGATGAGGTTCTGCTATTGAATTCCCTTGATAACTATGTATTGCAGTATGTGGTGGAGCTACAGAAAAGGTTGACAACAAATGGTGTAGGTGATGTTTGGCAGTCTGATGGTTCTGACATGAGCAGGAGGAGGGGAGGTAGAAATTTTGATAATGTGTTTGGGAGCACATCTCCTGACTATTTGCCCTTTGAATTTAGGGCTTTAGAAGTTGCTTTGGAGGCTGCCTGTACATTCCTTGATTCTCAGGCAGCTGAACTGGAAATTGAAGCTTATCCATTACTTGATGAGCTTACGTCAAAAATCAGTACACTGAACTTGGAACGTGCTCGACGATTGAAAAGCAGACTTCTTGCCTTGACTCGAAGAGTTCAGAAGGTTCGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGATATGGCTGAGATGTATCTTACTGAGAAGAAAAGTCGTATGGAGGCATCATTTTATGGTGAACAATCTGTGATGGGGTATAGATCTAATGATGGTATATCTCTTTCTGCTCCTGTATCCCCTGTATCTTCACCTCCCGATGGTCGAAAACTTGAGAAAAGCTTGAGTATTGCAAGGAGTCGACATGAAAGCATGAGAAGTTCAGAAAGTGCTACAGAGAGTATAGAAGAGCTTGAGATGCTGCTGGAAGCGTACTTTGTTGTCATTGATAGCACCCTGAATAAGCTGACTTCGTTGAAAGAATACATTGATGATACAGAAGATTTTATTAACATTCAGCTGGATAATGTCCGTAATCAGCTGATTCAATTTGAGCTGCTACTAACAACTGCAACTTTTGTGGTAGCGATATTTGGAGTTGTAGCAGGAATCTTTGGCATGAACTTCGAAATCGCATTGTTTGATGACCCTGCCGCGTTTAAGTGGGTACTTGTAATCACAGGAGTAACTGGCATTTGTATATTTTCTGCATTTGTGTGGTTCTTCAAGTATAGAAGACTCATGCCACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

420

Amino Acids

47.71

Weight (kDa)

4.95

Isoelectric Point (pI)

54.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	42 - 243	2.3e-24	Magnesium transporter MRS2-like
MRS2-like	PF22099	299 - 348	1.1e-06	Magnesium transporter MRS2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16010 AT1G16010 AT1G16010 AT1G80900 AT1G80900
fragaria_vesca	FvH4_6g28490
malus_domestica	MD09G1225700.v1.1 MD17G1224500.v1.1
prunus_persica	Prupe.3G100200_v2.0.a1 Prupe.3G100200_v2.0.a1 Prupe.3G100200_v2.0.a1 Prupe.3G100200_v2.0.a1 Prupe.3G100200_v2.0.a1
pyrus_communis	pycom09g14520 pycom17g22820
rosa_chinensis	RchiOBHm_Chr2g0132741
rosa_laevigata	RLG00000019274
rosa_multiflora	Rmu_sc0004972.1_g000001 Rmu_ssc0000074.1_g000006
rosa_roxburghii	Rroxscaffold_2G00111690
rosa_rugosa	Rorug02G0307000 Rorug02G0307000
rosa_samantha	Rh2AG359600 Rh2DG382500
rosa_wichuraiana	Rw2G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	55, 172
AccBSI	CCGCTC	1 cut(s)	19
AccI	GTMKAC	1 cut(s)	871
AccII	CGCG	1 cut(s)	1166
AciI	CCGC	4 cut(s)	19, 29, 148, 1164
AclWI	GGATC	1 cut(s)	182
AcsI	RAATTY	3 cut(s)	295, 418, 467
AfaI	GTAC	5 cut(s)	203, 505, 583, 944, 1179
AfiI	CCNNNNNNNGG	4 cut(s)	99, 113, 147, 830
AgsI	TTSAA	7 cut(s)	295, 467, 542, 613, 988, 1058, 1237
Alw21I	GWGCWC	2 cut(s)	443, 604
AlwI	GGATC	1 cut(s)	182
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	6 cut(s)	22, 497, 524, 670, 931, 1066
ApoI	RAATTY	3 cut(s)	295, 418, 467
AsuHPI	GGTGA	4 cut(s)	130, 377, 761, 813
AsuII	TTCGAA	1 cut(s)	1137
BbsI	GAAGAC	1 cut(s)	1252
Bbv12I	GWGCWC	2 cut(s)	443, 604
BbvI	GCAGC	6 cut(s)	9, 484, 536, 682, 918, 1053
BccI	CCATC	5 cut(s)	377, 680, 757, 776, 824
BceAI	ACGGC	2 cut(s)	130, 288
BcgI	CGANNNNNNTGC	2 cut(s)	1117, 1151
BciVI	GTATCC	1 cut(s)	817
BfaI	CTAG	1 cut(s)	248
BfmI	CTRYAG	3 cut(s)	335, 903, 1259
BfuAI	ACCTGC	2 cut(s)	55, 172
BfuI	GTATCC	1 cut(s)	817
BglII	AGATCT	1 cut(s)	773
BisI	GCNGC	9 cut(s)	20, 23, 149, 498, 525, 671, 932, 1067, 1164
BlsI	GCNGC	9 cut(s)	21, 24, 150, 499, 526, 672, 933, 1068, 1165
BmsI	GCATC	4 cut(s)	59, 135, 746, 918
BpiI	GAAGAC	1 cut(s)	1252
BplI	GAGNNNNNCTC	2 cut(s)	430, 462
Bpu14I	TTCGAA	1 cut(s)	1137
BpuEI	CTTGAG	3 cut(s)	863, 874, 944
BsaJI	CCNNGG	1 cut(s)	217
BsaXI	ACNNNNNCTCC	2 cut(s)	397, 427
Bsc4I	CCNNNNNNNGG	4 cut(s)	99, 113, 147, 830
Bse1I	ACTGG	2 cut(s)	537, 1204
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	3 cut(s)	10, 664, 685
BseLI	CCNNNNNNNGG	4 cut(s)	99, 113, 147, 830
BseMII	CTCAG	3 cut(s)	533, 690, 705
BseNI	ACTGG	2 cut(s)	537, 1204
BseRI	GAGGAG	1 cut(s)	418
BseXI	GCAGC	6 cut(s)	9, 484, 536, 682, 918, 1053
Bsh1236I	CGCG	1 cut(s)	1166
BshFI	GGCC	1 cut(s)	92
BsiHKAI	GWGCWC	2 cut(s)	443, 604
BslI	CCNNNNNNNGG	4 cut(s)	99, 113, 147, 830
BsnI	GGCC	1 cut(s)	92
Bsp119I	TTCGAA	1 cut(s)	1137
Bsp1286I	GDGCHC	2 cut(s)	443, 604
Bsp1407I	TGTACA	1 cut(s)	503
Bsp143I	GATC	3 cut(s)	157, 187, 773
BspACI	CCGC	4 cut(s)	19, 29, 148, 1164
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	3 cut(s)	532, 691, 706
BspFNI	CGCG	1 cut(s)	1166
BspMI	ACCTGC	2 cut(s)	55, 172
BspPI	GGATC	1 cut(s)	182
BspQI	GCTCTTC	1 cut(s)	912
BspT104I	TTCGAA	1 cut(s)	1137
BsrBI	CCGCTC	1 cut(s)	19
BsrGI	TGTACA	1 cut(s)	503
BsrI	ACTGG	2 cut(s)	537, 1204
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	3 cut(s)	157, 187, 773
BssT1I	CCWWGG	1 cut(s)	217
Bst6I	CTCTTC	2 cut(s)	634, 912
BstAUI	TGTACA	1 cut(s)	503
BstBI	TTCGAA	1 cut(s)	1137
BstC8I	GCNNGC	1 cut(s)	182
BstDEI	CTNAG	3 cut(s)	519, 699, 714
BstENI	CCTNNNNNAGG	1 cut(s)	97
BstF5I	GGATG	3 cut(s)	10, 664, 685
BstFNI	CGCG	1 cut(s)	1166
BstKTI	GATC	3 cut(s)	160, 190, 776
BstMBI	GATC	3 cut(s)	157, 187, 773
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 494, 928
BstSFI	CTRYAG	3 cut(s)	335, 903, 1259
BstUI	CGCG	1 cut(s)	1166
BstV1I	GCAGC	6 cut(s)	9, 484, 536, 682, 918, 1053
BstV2I	GAAGAC	1 cut(s)	1252
BstX2I	RGATCY	1 cut(s)	773
BstYI	RGATCY	1 cut(s)	773
BsuI	GTATCC	1 cut(s)	817
BsuRI	GGCC	1 cut(s)	92
BtsCI	GGATG	3 cut(s)	10, 664, 685
BtsIMutI	CAGTG	1 cut(s)	584
BveI	ACCTGC	2 cut(s)	55, 172
Cac8I	GCNNGC	1 cut(s)	182
Csp6I	GTAC	5 cut(s)	202, 504, 582, 943, 1178
CspCI	CAANNNNNGTGG	2 cut(s)	1071, 1106
CviAII	CATG	7 cut(s)	142, 394, 676, 875, 883, 1129, 1252
CviQI	GTAC	5 cut(s)	202, 504, 582, 943, 1178
DdeI	CTNAG	3 cut(s)	519, 699, 714
DpnI	GATC	3 cut(s)	159, 189, 775
DpnII	GATC	3 cut(s)	157, 187, 773
Eam1104I	CTCTTC	2 cut(s)	634, 912
EarI	CTCTTC	2 cut(s)	634, 912
EciI	GGCGGA	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	217
EcoNI	CCTNNNNNAGG	1 cut(s)	97
EcoRI	GAATTC	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	217
FaeI	CATG	7 cut(s)	145, 397, 679, 878, 886, 1132, 1255
FalI	AAGNNNNNCTT	2 cut(s)	91, 123
FatI	CATG	7 cut(s)	141, 393, 675, 874, 882, 1128, 1251
FblI	GTMKAC	1 cut(s)	871
Fnu4HI	GCNGC	9 cut(s)	20, 23, 149, 498, 525, 671, 932, 1067, 1164
FokI	GGATG	3 cut(s)	17, 671, 692
Fsp4HI	GCNGC	9 cut(s)	20, 23, 149, 498, 525, 671, 932, 1067, 1164
FspBI	CTAG	1 cut(s)	248
GluI	GCNGC	9 cut(s)	20, 23, 149, 498, 525, 671, 932, 1067, 1164
HaeIII	GGCC	1 cut(s)	92
Hin1II	CATG	7 cut(s)	145, 397, 679, 878, 886, 1132, 1255
HincII	GTYRAC	3 cut(s)	130, 348, 872
HindII	GTYRAC	3 cut(s)	130, 348, 872
HindIII	AAGCTT	2 cut(s)	543, 850
HinfI	GANTC	8 cut(s)	71, 256, 515, 634, 868, 1054, 1119, 1248
HphI	GGTGA	4 cut(s)	130, 377, 761, 813
Hpy166II	GTNNAC	7 cut(s)	130, 138, 202, 348, 584, 752, 872
Hpy188I	TCNGA	5 cut(s)	84, 382, 391, 648, 895
Hpy188III	TCNNGA	5 cut(s)	68, 248, 449, 656, 827
Hpy8I	GTNNAC	7 cut(s)	130, 138, 202, 348, 584, 752, 872
Hpy99I	CGWCG	1 cut(s)	609
HpyAV	CCTTC	3 cut(s)	93, 223, 643
HpyCH4IV	ACGT	2 cut(s)	569, 598
HpyCH4V	TGCA	5 cut(s)	50, 319, 863, 1082, 1220
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 494, 928
HpyF3I	CTNAG	3 cut(s)	519, 699, 714
HpySE526I	ACGT	2 cut(s)	569, 598
Hsp92II	CATG	7 cut(s)	145, 397, 679, 878, 886, 1132, 1255
Kzo9I	GATC	3 cut(s)	157, 187, 773
LguI	GCTCTTC	1 cut(s)	912
LmnI	GCTCC	4 cut(s)	16, 331, 438, 805
Lsp1109I	GCAGC	6 cut(s)	9, 484, 536, 682, 918, 1053
LweI	GCATC	4 cut(s)	59, 135, 746, 918
MaeI	CTAG	1 cut(s)	248
MaeII	ACGT	2 cut(s)	569, 598
MaeIII	GTNAC	1 cut(s)	1195
MalI	GATC	3 cut(s)	159, 189, 775
MbiI	CCGCTC	1 cut(s)	19
MboI	GATC	3 cut(s)	157, 187, 773
MboII	GAAGA	8 cut(s)	56, 651, 730, 810, 929, 1022, 1225, 1257
MflI	RGATCY	1 cut(s)	773
MhlI	GDGCHC	2 cut(s)	443, 604
MluCI	AATT	5 cut(s)	295, 418, 467, 537, 1058
MlyI	GAGTC	3 cut(s)	628, 877, 1242
MseI	TTAA	2 cut(s)	1020, 1170
MslI	CAYNNNNRTG	2 cut(s)	143, 1225
MspA1I	CMGCKG	3 cut(s)	527, 1030, 1051
MvnI	CGCG	1 cut(s)	1166
MwoI	GCNNNNNNNGC	3 cut(s)	28, 494, 928
NdeII	GATC	3 cut(s)	157, 187, 773
NlaIII	CATG	7 cut(s)	145, 397, 679, 878, 886, 1132, 1255
NspV	TTCGAA	1 cut(s)	1137
PciSI	GCTCTTC	1 cut(s)	912
PcsI	WCGNNNNNNNCGW	1 cut(s)	604
PfeI	GAWTC	5 cut(s)	71, 256, 515, 1054, 1119
PkrI	GCNGC	9 cut(s)	21, 24, 150, 499, 526, 672, 933, 1068, 1165
PleI	GAGTC	3 cut(s)	628, 876, 1242
PpsI	GAGTC	3 cut(s)	628, 876, 1242
PsuI	RGATCY	1 cut(s)	773
PvuII	CAGCTG	3 cut(s)	527, 1030, 1051
RsaI	GTAC	5 cut(s)	203, 505, 583, 944, 1179
RsaNI	GTAC	5 cut(s)	202, 504, 582, 943, 1178
RseI	CAYNNNNRTG	2 cut(s)	143, 1225
SalI	GTCGAC	1 cut(s)	870
SapI	GCTCTTC	1 cut(s)	912
SaqAI	TTAA	2 cut(s)	1020, 1170
SatI	GCNGC	9 cut(s)	20, 23, 149, 498, 525, 671, 932, 1067, 1164
Sau3AI	GATC	3 cut(s)	157, 187, 773
SchI	GAGTC	3 cut(s)	628, 877, 1242
SduI	GDGCHC	2 cut(s)	443, 604
SfaNI	GCATC	4 cut(s)	59, 135, 746, 918
SfcI	CTRYAG	3 cut(s)	335, 903, 1259
SfuI	TTCGAA	1 cut(s)	1137
SmiMI	CAYNNNNRTG	2 cut(s)	143, 1225
SmlI	CTYRAG	4 cut(s)	11, 842, 853, 923
SmoI	CTYRAG	4 cut(s)	11, 842, 853, 923
Sse9I	AATT	5 cut(s)	295, 418, 467, 537, 1058
SsiI	CCGC	4 cut(s)	19, 29, 148, 1164
SspMI	CTAG	1 cut(s)	248
StyI	CCWWGG	1 cut(s)	217
TaiI	ACGT	2 cut(s)	572, 601
TaqI	TCGA	5 cut(s)	604, 637, 835, 871, 1137
TasI	AATT	5 cut(s)	295, 418, 467, 537, 1058
TatI	WGTACW	2 cut(s)	503, 581
TauI	GCSGC	3 cut(s)	22, 151, 1166
TfiI	GAWTC	5 cut(s)	71, 256, 515, 1054, 1119
Tru1I	TTAA	2 cut(s)	1020, 1170
Tru9I	TTAA	2 cut(s)	1020, 1170
TscAI	CASTG	1 cut(s)	591
TseI	GCWGC	6 cut(s)	22, 497, 524, 670, 931, 1066
TspDTI	ATGAA	3 cut(s)	675, 891, 1145
TspGWI	ACGGA	1 cut(s)	1031
TspRI	CASTG	1 cut(s)	591
XagI	CCTNNNNNAGG	1 cut(s)	97
XapI	RAATTY	3 cut(s)	295, 418, 467
XbaI	TCTAGA	1 cut(s)	247
XmiI	GTMKAC	1 cut(s)	871
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.