Tumour-associated protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G60995 |
| fragaria_vesca | FvH4_5g29191 |
| malus_domestica | MD08G1235100.v1.1 MD15G1426300.v1.1 |
| prunus_persica | Prupe.1G004500_v2.0.a1 |
| pyrus_communis | pycom08g20320 pycom08g20330 pycom15g37730 |
| rosa_chinensis | RchiOBHm_Chr1g0332251 |
| rosa_laevigata | RLG00000002109 RLG00000029682 |
| rosa_multiflora | Rmu_sc0000834.1_g000024 Rmu_sc0004145.1_g000017 |
| rosa_roxburghii | Rroxscaffold_2G00085880 Rroxscaffold_3G00237580 |
| rosa_rugosa | Rorug01G0099700 Rorug07G0204200 Rorug07G0204300 |
| rosa_samantha | Rh1AG123400 Rh1CG117800 Rh1DG128700 Rh7BG335600 |
| rosa_wichuraiana | Rw1G010050 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 891 |
| Acc16I | TGCGCA | 1 cut(s) | 608 |
| Acc36I | ACCTGC | 1 cut(s) | 560 |
| AccB1I | GGYRCC | 1 cut(s) | 1444 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1643 |
| AccBSI | CCGCTC | 1 cut(s) | 37 |
| AccI | GTMKAC | 1 cut(s) | 574 |
| AccIII | TCCGGA | 1 cut(s) | 7 |
| AciI | CCGC | 3 cut(s) | 37, 1279, 1309 |
| AclWI | GGATC | 4 cut(s) | 12, 43, 348, 1805 |
| AcsI | RAATTY | 2 cut(s) | 290, 553 |
| AcuI | CTGAAG | 4 cut(s) | 351, 1091, 1671, 1839 |
| AfaI | GTAC | 2 cut(s) | 30, 83 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 878, 944, 1441, 1643, 1696, 1760 |
| AgsI | TTSAA | 9 cut(s) | 149, 165, 185, 209, 319, 677, 1091, 1148, 1558 |
| AjnI | CCWGG | 7 cut(s) | 154, 871, 1570, 1575, 1603, 1657, 1717 |
| AleI | CACNNNNGTG | 1 cut(s) | 263 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1638, 1670 |
| Alw26I | GTCTC | 3 cut(s) | 449, 957, 1854 |
| AlwI | GGATC | 4 cut(s) | 12, 43, 348, 1805 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 811 |
| Aor13HI | TCCGGA | 1 cut(s) | 7 |
| AoxI | GGCC | 3 cut(s) | 1573, 1720, 1822 |
| ApeKI | GCWGC | 8 cut(s) | 71, 467, 805, 1084, 1394, 1397, 1408, 1663 |
| ApoI | RAATTY | 2 cut(s) | 290, 553 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 275, 307 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1775 |
| AspA2I | CCTAGG | 1 cut(s) | 1889 |
| AspLEI | GCGC | 2 cut(s) | 609, 1766 |
| AspS9I | GGNCC | 5 cut(s) | 424, 947, 1231, 1601, 1751 |
| AsuC2I | CCSGG | 2 cut(s) | 1697, 1761 |
| AsuHPI | GGTGA | 1 cut(s) | 250 |
| AvaII | GGWCC | 5 cut(s) | 424, 947, 1231, 1601, 1751 |
| AvrII | CCTAGG | 1 cut(s) | 1889 |
| AxyI | CCTNAGG | 1 cut(s) | 1710 |
| BamHI | GGATCC | 1 cut(s) | 4 |
| BanI | GGYRCC | 1 cut(s) | 1444 |
| BanII | GRGCYC | 1 cut(s) | 739 |
| BbvI | GCAGC | 8 cut(s) | 58, 479, 817, 1096, 1381, 1409, 1420, 1650 |
| BccI | CCATC | 1 cut(s) | 1645 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 731, 765 |
| BciT130I | CCWGG | 7 cut(s) | 156, 873, 1572, 1577, 1605, 1659, 1719 |
| BcnI | CCSGG | 2 cut(s) | 1697, 1761 |
| BcoDI | GTCTC | 3 cut(s) | 449, 957, 1854 |
| BfaI | CTAG | 1 cut(s) | 1890 |
| BfmI | CTRYAG | 2 cut(s) | 1389, 1395 |
| BfoI | RGCGCY | 1 cut(s) | 1767 |
| BfuAI | ACCTGC | 1 cut(s) | 560 |
| BglII | AGATCT | 2 cut(s) | 583, 1613 |
| BisI | GCNGC | 8 cut(s) | 72, 468, 806, 1085, 1395, 1398, 1409, 1664 |
| BlnI | CCTAGG | 1 cut(s) | 1889 |
| BlpI | GCTNAGC | 1 cut(s) | 738 |
| BlsI | GCNGC | 8 cut(s) | 73, 469, 807, 1086, 1396, 1399, 1410, 1665 |
| Bme1390I | CCNGG | 9 cut(s) | 156, 873, 1572, 1577, 1605, 1659, 1697, 1719, 1761 |
| Bme18I | GGWCC | 5 cut(s) | 424, 947, 1231, 1601, 1751 |
| BmgT120I | GGNCC | 5 cut(s) | 424, 947, 1231, 1601, 1751 |
| BmiI | GGNNCC | 4 cut(s) | 6, 1433, 1446, 1716 |
| BmrFI | CCNGG | 9 cut(s) | 156, 873, 1572, 1577, 1605, 1659, 1697, 1719, 1761 |
| BmsI | GCATC | 3 cut(s) | 385, 1420, 1604 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 26, 58 |
| BpmI | CTGGAG | 1 cut(s) | 1472 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 738 |
| BpuEI | CTTGAG | 1 cut(s) | 674 |
| BpuMI | CCSGG | 2 cut(s) | 1697, 1761 |
| Bsa29I | ATCGAT | 1 cut(s) | 1292 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1172 |
| BsaI | GGTCTC | 1 cut(s) | 1854 |
| BsaJI | CCNNGG | 4 cut(s) | 1604, 1658, 1759, 1889 |
| BsaWI | WCCGGW | 1 cut(s) | 7 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1638, 1668 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 878, 944, 1441, 1643, 1696, 1760 |
| Bse1I | ACTGG | 2 cut(s) | 222, 1123 |
| Bse21I | CCTNAGG | 1 cut(s) | 1710 |
| Bse3DI | GCAATG | 1 cut(s) | 564 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1172 |
| BseAI | TCCGGA | 1 cut(s) | 7 |
| BseBI | CCWGG | 7 cut(s) | 156, 873, 1572, 1577, 1605, 1659, 1719 |
| BseCI | ATCGAT | 1 cut(s) | 1292 |
| BseDI | CCNNGG | 4 cut(s) | 1604, 1658, 1759, 1889 |
| BseGI | GGATG | 1 cut(s) | 343 |
| BseJI | GATNNNNATC | 1 cut(s) | 1172 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 878, 944, 1441, 1643, 1696, 1760 |
| BseMI | GCAATG | 1 cut(s) | 564 |
| BseMII | CTCAG | 4 cut(s) | 752, 1601, 1724, 1724 |
| BseNI | ACTGG | 2 cut(s) | 222, 1123 |
| BseXI | GCAGC | 8 cut(s) | 58, 479, 817, 1096, 1381, 1409, 1420, 1650 |
| BsgI | GTGCAG | 3 cut(s) | 246, 665, 1103 |
| BshFI | GGCC | 3 cut(s) | 1575, 1722, 1824 |
| BshNI | GGYRCC | 1 cut(s) | 1444 |
| BshVI | ATCGAT | 1 cut(s) | 1292 |
| BsiSI | CCGG | 4 cut(s) | 8, 347, 1696, 1761 |
| BslFI | GGGAC | 1 cut(s) | 263 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 878, 944, 1441, 1643, 1696, 1760 |
| BsmAI | GTCTC | 3 cut(s) | 449, 957, 1854 |
| BsmFI | GGGAC | 1 cut(s) | 263 |
| BsnI | GGCC | 3 cut(s) | 1575, 1722, 1824 |
| Bso31I | GGTCTC | 1 cut(s) | 1854 |
| Bsp1286I | GDGCHC | 1 cut(s) | 739 |
| Bsp13I | TCCGGA | 1 cut(s) | 7 |
| Bsp143I | GATC | 9 cut(s) | 4, 48, 340, 583, 1173, 1210, 1478, 1613, 1797 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 738 |
| BspACI | CCGC | 3 cut(s) | 37, 1279, 1309 |
| BspANI | GGCC | 3 cut(s) | 1575, 1722, 1824 |
| BspCNI | CTCAG | 4 cut(s) | 751, 1602, 1723, 1725 |
| BspDI | ATCGAT | 1 cut(s) | 1292 |
| BspEI | TCCGGA | 1 cut(s) | 7 |
| BspLI | GGNNCC | 4 cut(s) | 6, 1433, 1446, 1716 |
| BspMAI | CTGCAG | 1 cut(s) | 1399 |
| BspMI | ACCTGC | 1 cut(s) | 560 |
| BspPI | GGATC | 4 cut(s) | 12, 43, 348, 1805 |
| BspT107I | GGYRCC | 1 cut(s) | 1444 |
| BspTNI | GGTCTC | 1 cut(s) | 1854 |
| BsrBI | CCGCTC | 1 cut(s) | 37 |
| BsrDI | GCAATG | 1 cut(s) | 564 |
| BsrI | ACTGG | 2 cut(s) | 222, 1123 |
| BssECI | CCNNGG | 4 cut(s) | 1604, 1658, 1759, 1889 |
| BssMI | GATC | 9 cut(s) | 4, 48, 340, 583, 1173, 1210, 1478, 1613, 1797 |
| BssNAI | GTATAC | 1 cut(s) | 575 |
| BssT1I | CCWWGG | 1 cut(s) | 1889 |
| Bst1107I | GTATAC | 1 cut(s) | 575 |
| Bst2UI | CCWGG | 7 cut(s) | 156, 873, 1572, 1577, 1605, 1659, 1719 |
| Bst4CI | ACNGT | 6 cut(s) | 388, 428, 460, 1081, 1436, 1674 |
| Bst6I | CTCTTC | 1 cut(s) | 98 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 811 |
| BstC8I | GCNNGC | 2 cut(s) | 135, 1067 |
| BstDEI | CTNAG | 6 cut(s) | 738, 920, 1610, 1710, 1733, 1801 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 876 |
| BstF5I | GGATG | 1 cut(s) | 343 |
| BstH2I | RGCGCY | 1 cut(s) | 1767 |
| BstHHI | GCGC | 2 cut(s) | 609, 1766 |
| BstKTI | GATC | 9 cut(s) | 7, 51, 343, 586, 1176, 1213, 1481, 1616, 1800 |
| BstMAI | GTCTC | 3 cut(s) | 449, 957, 1854 |
| BstMBI | GATC | 9 cut(s) | 4, 48, 340, 583, 1173, 1210, 1478, 1613, 1797 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 43, 811 |
| BstNI | CCWGG | 7 cut(s) | 156, 873, 1572, 1577, 1605, 1659, 1719 |
| BstNSI | RCATGY | 3 cut(s) | 137, 1069, 1142 |
| BstSCI | CCNGG | 9 cut(s) | 154, 871, 1570, 1575, 1603, 1657, 1695, 1717, 1759 |
| BstSFI | CTRYAG | 2 cut(s) | 1389, 1395 |
| BstV1I | GCAGC | 8 cut(s) | 58, 479, 817, 1096, 1381, 1409, 1420, 1650 |
| BstX2I | RGATCY | 5 cut(s) | 4, 48, 583, 1613, 1797 |
| BstYI | RGATCY | 5 cut(s) | 4, 48, 583, 1613, 1797 |
| BstZ17I | GTATAC | 1 cut(s) | 575 |
| Bsu15I | ATCGAT | 1 cut(s) | 1292 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1710 |
| BsuRI | GGCC | 3 cut(s) | 1575, 1722, 1824 |
| BsuTUI | ATCGAT | 1 cut(s) | 1292 |
| BtsCI | GGATG | 1 cut(s) | 343 |
| BtsI | GCAGTG | 3 cut(s) | 648, 653, 1638 |
| BtsIMutI | CAGTG | 7 cut(s) | 229, 525, 648, 653, 1086, 1279, 1638 |
| BveI | ACCTGC | 1 cut(s) | 560 |
| Cac8I | GCNNGC | 2 cut(s) | 135, 1067 |
| CaiI | CAGNNNCTG | 1 cut(s) | 811 |
| CfoI | GCGC | 2 cut(s) | 609, 1766 |
| Cfr13I | GGNCC | 5 cut(s) | 424, 947, 1231, 1601, 1751 |
| ClaI | ATCGAT | 1 cut(s) | 1292 |
| CseI | GACGC | 1 cut(s) | 491 |
| Csp6I | GTAC | 2 cut(s) | 29, 82 |
| CviAII | CATG | 5 cut(s) | 134, 1027, 1066, 1097, 1139 |
| CviQI | GTAC | 2 cut(s) | 29, 82 |
| DdeI | CTNAG | 6 cut(s) | 738, 920, 1610, 1710, 1733, 1801 |
| DpnI | GATC | 9 cut(s) | 6, 50, 342, 585, 1175, 1212, 1480, 1615, 1799 |
| DpnII | GATC | 9 cut(s) | 4, 48, 340, 583, 1173, 1210, 1478, 1613, 1797 |
| Eam1104I | CTCTTC | 1 cut(s) | 98 |
| EarI | CTCTTC | 1 cut(s) | 98 |
| Eco130I | CCWWGG | 1 cut(s) | 1889 |
| Eco147I | AGGCCT | 1 cut(s) | 1824 |
| Eco24I | GRGCYC | 1 cut(s) | 739 |
| Eco31I | GGTCTC | 1 cut(s) | 1854 |
| Eco47I | GGWCC | 5 cut(s) | 424, 947, 1231, 1601, 1751 |
| Eco57I | CTGAAG | 4 cut(s) | 351, 1091, 1671, 1839 |
| Eco81I | CCTNAGG | 1 cut(s) | 1710 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 876 |
| EcoO109I | RGGNCCY | 1 cut(s) | 947 |
| EcoRII | CCWGG | 7 cut(s) | 154, 871, 1570, 1575, 1603, 1657, 1717 |
| EcoT14I | CCWWGG | 1 cut(s) | 1889 |
| EcoT22I | ATGCAT | 1 cut(s) | 135 |
| EcoT38I | GRGCYC | 1 cut(s) | 739 |
| ErhI | CCWWGG | 1 cut(s) | 1889 |
| FaeI | CATG | 5 cut(s) | 137, 1030, 1069, 1100, 1142 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 456, 488, 655, 687, 870, 902, 896, 928 |
| FaqI | GGGAC | 1 cut(s) | 263 |
| FatI | CATG | 5 cut(s) | 133, 1026, 1065, 1096, 1138 |
| FauI | CCCGC | 1 cut(s) | 1316 |
| FblI | GTMKAC | 1 cut(s) | 574 |
| Fnu4HI | GCNGC | 8 cut(s) | 72, 468, 806, 1085, 1395, 1398, 1409, 1664 |
| FokI | GGATG | 1 cut(s) | 330 |
| FriOI | GRGCYC | 1 cut(s) | 739 |
| Fsp4HI | GCNGC | 8 cut(s) | 72, 468, 806, 1085, 1395, 1398, 1409, 1664 |
| FspBI | CTAG | 1 cut(s) | 1890 |
| FspI | TGCGCA | 1 cut(s) | 608 |
| GlaI | GCGC | 2 cut(s) | 608, 1765 |
| GluI | GCNGC | 8 cut(s) | 72, 468, 806, 1085, 1395, 1398, 1409, 1664 |
| GsuI | CTGGAG | 1 cut(s) | 1472 |
| HaeII | RGCGCY | 1 cut(s) | 1767 |
| HaeIII | GGCC | 3 cut(s) | 1575, 1722, 1824 |
| HapII | CCGG | 4 cut(s) | 8, 347, 1696, 1761 |
| HgaI | GACGC | 1 cut(s) | 491 |
| HhaI | GCGC | 2 cut(s) | 609, 1766 |
| Hin1II | CATG | 5 cut(s) | 137, 1030, 1069, 1100, 1142 |
| Hin6I | GCGC | 2 cut(s) | 607, 1764 |
| HinP1I | GCGC | 2 cut(s) | 607, 1764 |
| HincII | GTYRAC | 1 cut(s) | 631 |
| HindII | GTYRAC | 1 cut(s) | 631 |
| HinfI | GANTC | 5 cut(s) | 248, 326, 1060, 1148, 1771 |
| HpaI | GTTAAC | 1 cut(s) | 631 |
| HpaII | CCGG | 4 cut(s) | 8, 347, 1696, 1761 |
| HphI | GGTGA | 1 cut(s) | 250 |
| Hpy166II | GTNNAC | 7 cut(s) | 258, 575, 631, 760, 1077, 1256, 1784 |
| Hpy188III | TCNNGA | 7 cut(s) | 8, 338, 587, 1177, 1429, 1599, 1904 |
| Hpy8I | GTNNAC | 7 cut(s) | 258, 575, 631, 760, 1077, 1256, 1784 |
| Hpy99I | CGWCG | 1 cut(s) | 1479 |
| HpyAV | CCTTC | 2 cut(s) | 28, 1814 |
| HpyCH4III | ACNGT | 6 cut(s) | 388, 428, 460, 1081, 1436, 1674 |
| HpyCH4IV | ACGT | 3 cut(s) | 107, 144, 264 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 43, 811 |
| HpyF3I | CTNAG | 6 cut(s) | 738, 920, 1610, 1710, 1733, 1801 |
| HpySE526I | ACGT | 3 cut(s) | 107, 144, 264 |
| Hsp92II | CATG | 5 cut(s) | 137, 1030, 1069, 1100, 1142 |
| HspAI | GCGC | 2 cut(s) | 607, 1764 |
| Kpn2I | TCCGGA | 1 cut(s) | 7 |
| KspAI | GTTAAC | 1 cut(s) | 631 |
| Kzo9I | GATC | 9 cut(s) | 4, 48, 340, 583, 1173, 1210, 1478, 1613, 1797 |
| LmnI | GCTCC | 4 cut(s) | 10, 561, 1491, 1646 |
| Lsp1109I | GCAGC | 8 cut(s) | 58, 479, 817, 1096, 1381, 1409, 1420, 1650 |
| LweI | GCATC | 3 cut(s) | 385, 1420, 1604 |
| MaeI | CTAG | 1 cut(s) | 1890 |
| MaeII | ACGT | 3 cut(s) | 107, 144, 264 |
| MaeIII | GTNAC | 2 cut(s) | 973, 999 |
| MalI | GATC | 9 cut(s) | 6, 50, 342, 585, 1175, 1212, 1480, 1615, 1799 |
| MbiI | CCGCTC | 1 cut(s) | 37 |
| MboI | GATC | 9 cut(s) | 4, 48, 340, 583, 1173, 1210, 1478, 1613, 1797 |
| MboII | GAAGA | 1 cut(s) | 85 |
| MflI | RGATCY | 5 cut(s) | 4, 48, 583, 1613, 1797 |
| MhlI | GDGCHC | 1 cut(s) | 739 |
| MlyI | GAGTC | 2 cut(s) | 257, 1054 |
| MmeI | TCCRAC | 2 cut(s) | 811, 1139 |
| Mph1103I | ATGCAT | 1 cut(s) | 135 |
| MroI | TCCGGA | 1 cut(s) | 7 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1775 |
| MseI | TTAA | 8 cut(s) | 213, 462, 477, 630, 819, 848, 915, 1581 |
| MslI | CAYNNNNRTG | 3 cut(s) | 263, 1031, 1292 |
| MspA1I | CMGCKG | 1 cut(s) | 1394 |
| MspI | CCGG | 4 cut(s) | 8, 347, 1696, 1761 |
| MspR9I | CCNGG | 9 cut(s) | 156, 873, 1572, 1577, 1605, 1659, 1697, 1719, 1761 |
| MvaI | CCWGG | 7 cut(s) | 156, 873, 1572, 1577, 1605, 1659, 1719 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 43, 811 |
| NciI | CCSGG | 2 cut(s) | 1697, 1761 |
| NdeII | GATC | 9 cut(s) | 4, 48, 340, 583, 1173, 1210, 1478, 1613, 1797 |
| NlaIII | CATG | 5 cut(s) | 137, 1030, 1069, 1100, 1142 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 1433, 1446, 1716 |
| NmuCI | GTSAC | 2 cut(s) | 973, 999 |
| NsbI | TGCGCA | 1 cut(s) | 608 |
| NsiI | ATGCAT | 1 cut(s) | 135 |
| NspI | RCATGY | 3 cut(s) | 137, 1069, 1142 |
| OliI | CACNNNNGTG | 1 cut(s) | 263 |
| PaeI | GCATGC | 2 cut(s) | 137, 1069 |
| PceI | AGGCCT | 1 cut(s) | 1824 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1775 |
| PfeI | GAWTC | 3 cut(s) | 326, 1148, 1771 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1643 |
| PfoI | TCCNGGA | 1 cut(s) | 871 |
| PkrI | GCNGC | 8 cut(s) | 73, 469, 807, 1086, 1396, 1399, 1410, 1665 |
| PleI | GAGTC | 2 cut(s) | 256, 1054 |
| PpsI | GAGTC | 2 cut(s) | 256, 1054 |
| PpuMI | RGGWCCY | 1 cut(s) | 947 |
| PsiI | TTATAA | 1 cut(s) | 891 |
| Psp5II | RGGWCCY | 1 cut(s) | 947 |
| Psp6I | CCWGG | 7 cut(s) | 154, 871, 1570, 1575, 1603, 1657, 1717 |
| PspGI | CCWGG | 7 cut(s) | 154, 871, 1570, 1575, 1603, 1657, 1717 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 1433, 1446, 1716 |
| PspPI | GGNCC | 5 cut(s) | 424, 947, 1231, 1601, 1751 |
| PspPPI | RGGWCCY | 1 cut(s) | 947 |
| PstI | CTGCAG | 1 cut(s) | 1399 |
| PstNI | CAGNNNCTG | 1 cut(s) | 811 |
| PsuI | RGATCY | 5 cut(s) | 4, 48, 583, 1613, 1797 |
| PvuII | CAGCTG | 1 cut(s) | 1394 |
| RsaI | GTAC | 2 cut(s) | 30, 83 |
| RsaNI | GTAC | 2 cut(s) | 29, 82 |
| RseI | CAYNNNNRTG | 3 cut(s) | 263, 1031, 1292 |
| SaqAI | TTAA | 8 cut(s) | 213, 462, 477, 630, 819, 848, 915, 1581 |
| SatI | GCNGC | 8 cut(s) | 72, 468, 806, 1085, 1395, 1398, 1409, 1664 |
| Sau3AI | GATC | 9 cut(s) | 4, 48, 340, 583, 1173, 1210, 1478, 1613, 1797 |
| Sau96I | GGNCC | 5 cut(s) | 424, 947, 1231, 1601, 1751 |
| SchI | GAGTC | 2 cut(s) | 257, 1054 |
| ScrFI | CCNGG | 9 cut(s) | 156, 873, 1572, 1577, 1605, 1659, 1697, 1719, 1761 |
| SduI | GDGCHC | 1 cut(s) | 739 |
| SfaNI | GCATC | 3 cut(s) | 385, 1420, 1604 |
| SfcI | CTRYAG | 2 cut(s) | 1389, 1395 |
| SinI | GGWCC | 5 cut(s) | 424, 947, 1231, 1601, 1751 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 263, 1031, 1292 |
| SmlI | CTYRAG | 1 cut(s) | 653 |
| SmoI | CTYRAG | 1 cut(s) | 653 |
| SphI | GCATGC | 2 cut(s) | 137, 1069 |
| SseBI | AGGCCT | 1 cut(s) | 1824 |
| SsiI | CCGC | 3 cut(s) | 37, 1279, 1309 |
| SspI | AATATT | 1 cut(s) | 748 |
| SspMI | CTAG | 1 cut(s) | 1890 |
| StuI | AGGCCT | 1 cut(s) | 1824 |
| StyD4I | CCNGG | 9 cut(s) | 154, 871, 1570, 1575, 1603, 1657, 1695, 1717, 1759 |
| StyI | CCWWGG | 1 cut(s) | 1889 |
| TaaI | ACNGT | 6 cut(s) | 388, 428, 460, 1081, 1436, 1674 |
| TaiI | ACGT | 3 cut(s) | 110, 147, 267 |
| TaqI | TCGA | 3 cut(s) | 778, 1292, 1474 |
| TatI | WGTACW | 2 cut(s) | 28, 81 |
| TfiI | GAWTC | 3 cut(s) | 326, 1148, 1771 |
| Tru1I | TTAA | 8 cut(s) | 213, 462, 477, 630, 819, 848, 915, 1581 |
| Tru9I | TTAA | 8 cut(s) | 213, 462, 477, 630, 819, 848, 915, 1581 |
| TscAI | CASTG | 7 cut(s) | 229, 525, 648, 653, 1086, 1279, 1638 |
| TseFI | GTSAC | 2 cut(s) | 973, 999 |
| TseI | GCWGC | 8 cut(s) | 71, 467, 805, 1084, 1394, 1397, 1408, 1663 |
| Tsp45I | GTSAC | 2 cut(s) | 973, 999 |
| TspDTI | ATGAA | 6 cut(s) | 10, 85, 426, 1310, 1506, 1784 |
| TspGWI | ACGGA | 1 cut(s) | 549 |
| TspRI | CASTG | 7 cut(s) | 229, 525, 648, 653, 1086, 1279, 1638 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1643 |
| VpaK11BI | GGWCC | 5 cut(s) | 424, 947, 1231, 1601, 1751 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 876 |
| XapI | RAATTY | 2 cut(s) | 290, 553 |
| XceI | RCATGY | 3 cut(s) | 137, 1069, 1142 |
| XmaJI | CCTAGG | 1 cut(s) | 1889 |
| XmiI | GTMKAC | 1 cut(s) | 574 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1775 |
| XspI | CTAG | 1 cut(s) | 1890 |
| Zsp2I | ATGCAT | 1 cut(s) | 135 |