Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008622

Physical Location & Seq

Genomic Coordinates Reverse (-)

8150701 .. 8155059

Gene Structure 4359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00085880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCGCTTGTGAAACTCATCACGAATTTCAGCAATGTCGTTATTTCCAAATTTGGGAATACCAGAAGCACTAGTAGCAAGTCGATCACCATGATCAGAATGTCGTCGTCGTCGTCCACCAAAAAGCCCACTACTAAGAAAGCCATCAAGGAGACACTGTTGGCACCAAGGTTCTACACCACCGACTTTGATGAGATTCTGGATCATCAGGCAGATAGCTGTATGCCAAATGTTGATGATGCGGTTATGAAAACTGAAATAGAGGAGTCACGTAGTAGTTTTCCTTTATCTGCGAAAGAGACATTCAAAGCAGCACTCTTTCATTTTAGCAACAAGTGGCACAGGCGTCTATCATTCCTCTGGAAGCATGGAACACATATTGTTGGAAGTTTGTGGAACATTGCAGGCATACATTTGGATCTTAATATTCCAAAGTGGCTGCATATTCTTCGATTGGACAGGCTTAACTCGTATGCAGGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Membralin

Protein Analysis

161

Amino Acids

18.3

Weight (kDa)

9.79

Isoelectric Point (pI)

65.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60995
fragaria_vesca	FvH4_5g29191
malus_domestica	MD08G1235100.v1.1 MD15G1426300.v1.1
prunus_persica	Prupe.1G004500_v2.0.a1
pyrus_communis	pycom08g20320 pycom08g20330 pycom15g37730
rosa_chinensis	RchiOBHm_Chr1g0332251
rosa_laevigata	RLG00000002109 RLG00000029682
rosa_multiflora	Rmu_sc0000834.1_g000024 Rmu_sc0004145.1_g000017
rosa_roxburghii	Rroxscaffold_2G00085880 Rroxscaffold_3G00237580
rosa_rugosa	Rorug01G0099700 Rorug07G0204200 Rorug07G0204300
rosa_samantha	Rh1AG123400 Rh1CG117800 Rh1DG128700 Rh7BG335600
rosa_wichuraiana	Rw1G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	467
AccB1I	GGYRCC	1 cut(s)	163
AciI	CCGC	1 cut(s)	242
AclWI	GGATC	2 cut(s)	210, 426
AcsI	RAATTY	2 cut(s)	25, 50
AcyI	GRCGYC	1 cut(s)	346
AfiI	CCNNNNNNNGG	1 cut(s)	54
AgsI	TTSAA	1 cut(s)	307
AhlI	ACTAGT	1 cut(s)	71
AluBI	AGCT	1 cut(s)	219
AluI	AGCT	1 cut(s)	219
Alw26I	GTCTC	2 cut(s)	146, 293
AlwI	GGATC	2 cut(s)	210, 426
ApeKI	GCWGC	2 cut(s)	311, 439
ApoI	RAATTY	2 cut(s)	25, 50
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	163
BbvI	GCAGC	2 cut(s)	323, 426
BccI	CCATC	1 cut(s)	152
BcgI	CGANNNNNNTGC	2 cut(s)	431, 465
BclI	TGATCA	1 cut(s)	93
BcoDI	GTCTC	2 cut(s)	146, 293
BcuI	ACTAGT	1 cut(s)	71
BfaI	CTAG	1 cut(s)	72
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	467
BisI	GCNGC	2 cut(s)	312, 440
BlsI	GCNGC	2 cut(s)	313, 441
BmiI	GGNNCC	1 cut(s)	165
BmsI	GCATC	1 cut(s)	229
BsaAI	YACGTR	1 cut(s)	272
BsaHI	GRCGYC	1 cut(s)	346
BsaJI	CCNNGG	1 cut(s)	167
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse3DI	GCAATG	2 cut(s)	40, 399
BseDI	CCNNGG	1 cut(s)	167
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMI	GCAATG	2 cut(s)	40, 399
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	2 cut(s)	323, 426
BshNI	GGYRCC	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmAI	GTCTC	2 cut(s)	146, 293
Bsp143I	GATC	4 cut(s)	84, 93, 202, 418
BspACI	CCGC	1 cut(s)	242
BspHI	TCATGA	1 cut(s)	482
BspLI	GGNNCC	1 cut(s)	165
BspMI	ACCTGC	1 cut(s)	467
BspPI	GGATC	2 cut(s)	210, 426
BspT107I	GGYRCC	1 cut(s)	163
BsrDI	GCAATG	2 cut(s)	40, 399
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	4 cut(s)	84, 93, 202, 418
BssNI	GRCGYC	1 cut(s)	346
BssT1I	CCWWGG	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	159
BstACI	GRCGYC	1 cut(s)	346
BstBAI	YACGTR	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	1 cut(s)	135
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	4 cut(s)	87, 96, 205, 421
BstMAI	GTCTC	2 cut(s)	146, 293
BstMBI	GATC	4 cut(s)	84, 93, 202, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	323, 426
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	155
BveI	ACCTGC	1 cut(s)	467
Cac8I	GCNNGC	1 cut(s)	406
CciI	TCATGA	1 cut(s)	482
CfoI	GCGC	1 cut(s)	7
CseI	GACGC	1 cut(s)	335
CspCI	CAANNNNNGTGG	2 cut(s)	169, 204
CviAII	CATG	3 cut(s)	91, 368, 483
CviJI	RGCY	5 cut(s)	127, 143, 219, 439, 463
CviKI_1	RGCY	5 cut(s)	127, 143, 219, 439, 463
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	4 cut(s)	86, 95, 204, 420
DpnII	GATC	4 cut(s)	84, 93, 202, 418
Eco130I	CCWWGG	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	167
FaeI	CATG	3 cut(s)	94, 371, 486
FaiI	YATR	9 cut(s)	92, 224, 248, 369, 378, 410, 444, 474, 484
FatI	CATG	3 cut(s)	90, 367, 482
FbaI	TGATCA	1 cut(s)	93
Fnu4HI	GCNGC	2 cut(s)	312, 440
Fsp4HI	GCNGC	2 cut(s)	312, 440
FspBI	CTAG	1 cut(s)	72
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	312, 440
HaeII	RGCGCY	1 cut(s)	8
HgaI	GACGC	1 cut(s)	335
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	346
Hin1II	CATG	3 cut(s)	94, 371, 486
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	2 cut(s)	196, 266
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	1 cut(s)	98
Hpy188III	TCNNGA	4 cut(s)	22, 200, 361, 483
Hpy8I	GTNNAC	1 cut(s)	117
Hpy99I	CGWCG	3 cut(s)	109, 112, 115
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	3 cut(s)	404, 442, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpyF3I	CTNAG	1 cut(s)	135
HpySE526I	ACGT	1 cut(s)	271
Hsp92I	GRCGYC	1 cut(s)	346
Hsp92II	CATG	3 cut(s)	94, 371, 486
HspAI	GCGC	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	4 cut(s)	84, 93, 202, 418
LpnPI	CCDG	8 cut(s)	76, 185, 194, 328, 346, 390, 445, 462
Lsp1109I	GCAGC	2 cut(s)	323, 426
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	72
MaeII	ACGT	1 cut(s)	271
MaeIII	GTNAC	1 cut(s)	267
MalI	GATC	4 cut(s)	86, 95, 204, 420
MboI	GATC	4 cut(s)	84, 93, 202, 418
MboII	GAAGA	1 cut(s)	440
MflI	RGATCY	1 cut(s)	418
MluCI	AATT	2 cut(s)	25, 50
MlyI	GAGTC	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	2 cut(s)	256, 368
MseI	TTAA	2 cut(s)	423, 465
MwoI	GCNNNNNNNGC	1 cut(s)	75
NdeII	GATC	4 cut(s)	84, 93, 202, 418
NlaIII	CATG	3 cut(s)	94, 371, 486
NlaIV	GGNNCC	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	267
PagI	TCATGA	1 cut(s)	482
PcsI	WCGNNNNNNNCGW	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	196
PkrI	GCNGC	2 cut(s)	313, 441
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
Ppu21I	YACGTR	1 cut(s)	272
PspN4I	GGNNCC	1 cut(s)	165
PsuI	RGATCY	1 cut(s)	418
SaqAI	TTAA	2 cut(s)	423, 465
SatI	GCNGC	2 cut(s)	312, 440
Sau3AI	GATC	4 cut(s)	84, 93, 202, 418
SchI	GAGTC	1 cut(s)	275
SetI	ASST	4 cut(s)	173, 221, 274, 481
SfaNI	GCATC	1 cut(s)	229
SpeI	ACTAGT	1 cut(s)	71
Sse9I	AATT	2 cut(s)	25, 50
SsiI	CCGC	1 cut(s)	242
SspI	AATATT	1 cut(s)	427
SspMI	CTAG	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	167
TaaI	ACNGT	1 cut(s)	159
TaiI	ACGT	1 cut(s)	274
TaqI	TCGA	2 cut(s)	83, 451
TasI	AATT	2 cut(s)	25, 50
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	2 cut(s)	423, 465
Tru9I	TTAA	2 cut(s)	423, 465
TscAI	CASTG	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	267
TseI	GCWGC	2 cut(s)	311, 439
Tsp45I	GTSAC	1 cut(s)	267
TspDTI	ATGAA	3 cut(s)	263, 311, 471
TspRI	CASTG	1 cut(s)	162
XapI	RAATTY	2 cut(s)	25, 50
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.