Rh1DG128700

Tumour-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0008622
Physical Location & Seq
Forward (+)
26876673 .. 26892400
15728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG128700.1

Sequence Viewer

Length: 1527 bp
ATGCCAAATGTTGATGATGTGGTTATGAAAACTGAAATAGAGGAGTCACGCAGTAGTTTTCCTTTATCTGCAAAAGAGACATTCAAAGCAGCACTCTTTCATTTTAGCAACAAGTGGCACAGGCGTCTATCATTCCTTTGGAAGCATGGAACACATATTGTTGGAAGTTTGTGGAACATTGCAGGCATACATTTGGATCTTGATATTCCAAAGTGGCTGCATATACTTCGATTGGACAGGCTTAACTCGTATGCAGTGCAGTGGCTTGAGAACAGAAGCAAAACTTTTGAACCAACTTACTTATACACTATGGAAAAGGGTTATTTCTTACTGCCTGAAAGTGCAAGAGCTCAGCATAATATTCGTACTGTAAACATAAGCATATCAGCTCGACATTCCTGTTTCGGAAACAGGTGGCAGCAGCTACTGATTAACAGATTTGTTGGGTACGATACTATTTTAATAAACAGTTTACTGAGTTCTCCTGGTCAAGGTTATCTTCATAATTTTCAAACAAAGGAGTTCTTTAATCTTAGTTATGCACATGAACCGCCAGAGGGTCCGGCAAGATTTGGAGACTACCTTGTGACAAAGTGTGGCGTTCTTATGATGTCTCTATTTGTGTTCTTTACAACCACTATGTCTGTGTCATTTACTTTGAGAGAGACGCAGACTAGGATGCTGAAGTTTACAGTGCAGCTTCAACACCATGCTCGTCATCAGCTTCCAACATTTCAGTTGATTTTTGTGCATGTAATTGAATCACTTGTCTTTGTCCCGATTATGATTGGCATATTGTTTTTTCTGTTCGAGTTTTATGATGATCAACTATTGGCTTTCATGGTCCTAATTCTTGTCTGGTTGAGTGAACTATTTACCCTGATCAGTGTTCGCACGCCCATATCAATGAAGTTCTTTCCCCGCTTCTTTCTGCTCTACTTTCTGGTTTTTCACATCTATTTCTTTTCCTATGCTTATGGTTTTTCCTATTTGGCTCTTTCTACGGCTGCAGCATTTATGCAGCATCTCATTCTATACTTCTGGAACCGTTTTGAGGTACCAACTCTACAAAGGTTTATTCAAAATCGAAGATCACAACTCCAACAACACCCAGATTTCCACATTACTTCCTCCACATTCCTTGCCTCAACTTTGCATATCACAAGATTAAACACAAGAAATCCTGGTCCAGTCAATTCTGACATAGTCTCTGGGCCTGGGCTGAGATCTGGATCCAATCCAGCAGTGCCTTCAAATGGAGCTGAAGCTCCTGGTTTTCATGAACGATCAGGCAATGAGAACCTAGTGCAAAACCCTCTTCAGGTTCCAGGCCAAACTGACCTGAATCAAGCAGAGAATGGCCCAAACCCCAGCACTATGAATTCTTTCAGTTCACTTTTGTTGTGGATATTAGGAGGAGCTTCCTCTGAAGGCCTCAACTCATTTCTTTCTATGTTCAGAGATGTCCGAGACCAAGGACAAGCTTATGCTGAATCTCCCAGGCAAGAAAATCAGGATGGAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Membralin

Protein Analysis

508

Amino Acids

58.55

Weight (kDa)

8.71

Isoelectric Point (pI)

55.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Membralin PF09746 102 - 303 1.5e-16 Tumour-associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1057
AccB1I GGYRCC 1 cut(s) 1057
AciI CCGC 2 cut(s) 551, 922
AclWI GGATC 3 cut(s) 204, 1227, 1240
AcsI RAATTY 1 cut(s) 1381
AcuI CTGAAG 4 cut(s) 704, 1284, 1304, 1449
AcyI GRCGYC 1 cut(s) 124
AfaI GTAC 3 cut(s) 367, 449, 1059
AfiI CCNNNNNNNGG 5 cut(s) 491, 557, 1054, 1256, 1321
AgsI TTSAA 7 cut(s) 85, 290, 512, 704, 761, 1082, 1254
AjnI CCWGG 6 cut(s) 484, 1183, 1216, 1270, 1327, 1499
AluBI AGCT 9 cut(s) 350, 389, 424, 700, 724, 1262, 1268, 1421, 1484
AluI AGCT 9 cut(s) 350, 389, 424, 700, 724, 1262, 1268, 1421, 1484
Alw21I GWGCWC 1 cut(s) 352
Alw26I GTCTC 6 cut(s) 71, 570, 618, 659, 1213, 1464
AlwI GGATC 3 cut(s) 204, 1227, 1240
AlwNI CAGNNNCTG 1 cut(s) 427
AoxI GGCC 4 cut(s) 1214, 1330, 1360, 1432
ApeKI GCWGC 8 cut(s) 89, 217, 418, 421, 697, 1007, 1010, 1021
ApoI RAATTY 1 cut(s) 1381
Asp700I GAANNNNTTC 1 cut(s) 1385
Asp718I GGTACC 1 cut(s) 1057
AspS9I GGNCC 5 cut(s) 560, 844, 1187, 1214, 1361
AvaII GGWCC 3 cut(s) 560, 844, 1187
BamHI GGATCC 1 cut(s) 1232
BanI GGYRCC 1 cut(s) 1057
BanII GRGCYC 1 cut(s) 352
Bbv12I GWGCWC 1 cut(s) 352
BbvI GCAGC 8 cut(s) 101, 204, 430, 433, 709, 994, 1022, 1033
BccI CCATC 1 cut(s) 1511
BceAI ACGGC 1 cut(s) 1020
BcgI CGANNNNNNTGC 4 cut(s) 209, 243, 344, 378
BciT130I CCWGG 6 cut(s) 486, 1185, 1218, 1272, 1329, 1501
BclI TGATCA 2 cut(s) 823, 882
BcoDI GTCTC 6 cut(s) 71, 570, 618, 659, 1213, 1464
BfaI CTAG 2 cut(s) 675, 1304
BfmI CTRYAG 1 cut(s) 1008
BglII AGATCT 1 cut(s) 1226
BisI GCNGC 8 cut(s) 90, 218, 419, 422, 698, 1008, 1011, 1022
BlpI GCTNAGC 1 cut(s) 351
BlsI GCNGC 8 cut(s) 91, 219, 420, 423, 699, 1009, 1012, 1023
Bme1390I CCNGG 6 cut(s) 486, 1185, 1218, 1272, 1329, 1501
Bme18I GGWCC 3 cut(s) 560, 844, 1187
BmgT120I GGNCC 5 cut(s) 560, 844, 1187, 1214, 1361
BmiI GGNNCC 5 cut(s) 561, 1046, 1059, 1234, 1326
BmrFI CCNGG 6 cut(s) 486, 1185, 1218, 1272, 1329, 1501
BmsI GCATC 2 cut(s) 669, 1033
Bpu1102I GCTNAGC 1 cut(s) 351
BpuEI CTTGAG 1 cut(s) 287
BsaBI GATNNNNATC 1 cut(s) 1231
BsaHI GRCGYC 1 cut(s) 124
BsaI GGTCTC 1 cut(s) 1464
BsaJI CCNNGG 3 cut(s) 1217, 1474, 1499
Bsc4I CCNNNNNNNGG 5 cut(s) 491, 557, 1054, 1256, 1321
Bse1I ACTGG 1 cut(s) 1190
Bse3DI GCAATG 2 cut(s) 177, 1300
Bse8I GATNNNNATC 1 cut(s) 1231
BseBI CCWGG 6 cut(s) 486, 1185, 1218, 1272, 1329, 1501
BseDI CCNNGG 3 cut(s) 1217, 1474, 1499
BseGI GGATG 2 cut(s) 684, 1522
BseJI GATNNNNATC 1 cut(s) 1231
BseLI CCNNNNNNNGG 5 cut(s) 491, 557, 1054, 1256, 1321
BseMI GCAATG 2 cut(s) 177, 1300
BseMII CTCAG 3 cut(s) 365, 467, 1214
BseNI ACTGG 1 cut(s) 1190
BseRI GAGGAG 2 cut(s) 56, 1431
BseXI GCAGC 8 cut(s) 101, 204, 430, 433, 709, 994, 1022, 1033
BseYI CCCAGC 1 cut(s) 1370
BsgI GTGCAG 2 cut(s) 278, 716
BshFI GGCC 4 cut(s) 1216, 1332, 1362, 1434
BshNI GGYRCC 1 cut(s) 1057
BsiHKAI GWGCWC 1 cut(s) 352
BsiSI CCGG 1 cut(s) 563
BslFI GGGAC 1 cut(s) 761
BslI CCNNNNNNNGG 5 cut(s) 491, 557, 1054, 1256, 1321
BsmAI GTCTC 6 cut(s) 71, 570, 618, 659, 1213, 1464
BsmBI CGTCTC 1 cut(s) 659
BsmFI GGGAC 1 cut(s) 761
BsnI GGCC 4 cut(s) 1216, 1332, 1362, 1434
Bso31I GGTCTC 1 cut(s) 1464
Bsp1286I GDGCHC 1 cut(s) 352
Bsp143I GATC 7 cut(s) 196, 823, 882, 1091, 1226, 1232, 1286
Bsp1720I GCTNAGC 1 cut(s) 351
BspACI CCGC 2 cut(s) 551, 922
BspANI GGCC 4 cut(s) 1216, 1332, 1362, 1434
BspCNI CTCAG 3 cut(s) 364, 468, 1215
BspHI TCATGA 1 cut(s) 1279
BspLI GGNNCC 5 cut(s) 561, 1046, 1059, 1234, 1326
BspMAI CTGCAG 1 cut(s) 1012
BspPI GGATC 3 cut(s) 204, 1227, 1240
BspT107I GGYRCC 1 cut(s) 1057
BspTNI GGTCTC 1 cut(s) 1464
BsrDI GCAATG 2 cut(s) 177, 1300
BsrI ACTGG 1 cut(s) 1190
BssECI CCNNGG 3 cut(s) 1217, 1474, 1499
BssMI GATC 7 cut(s) 196, 823, 882, 1091, 1226, 1232, 1286
BssNI GRCGYC 1 cut(s) 124
BssT1I CCWWGG 1 cut(s) 1474
Bst2UI CCWGG 6 cut(s) 486, 1185, 1218, 1272, 1329, 1501
Bst4CI ACNGT 4 cut(s) 370, 470, 694, 1049
Bst6I CTCTTC 1 cut(s) 1323
BstACI GRCGYC 1 cut(s) 124
BstC8I GCNNGC 2 cut(s) 184, 896
BstDEI CTNAG 4 cut(s) 351, 476, 533, 1223
BstENI CCTNNNNNAGG 1 cut(s) 489
BstF5I GGATG 2 cut(s) 684, 1522
BstKTI GATC 7 cut(s) 199, 826, 885, 1094, 1229, 1235, 1289
BstMAI GTCTC 6 cut(s) 71, 570, 618, 659, 1213, 1464
BstMBI GATC 7 cut(s) 196, 823, 882, 1091, 1226, 1232, 1286
BstNI CCWGG 6 cut(s) 486, 1185, 1218, 1272, 1329, 1501
BstNSI RCATGY 1 cut(s) 755
BstSCI CCNGG 6 cut(s) 484, 1183, 1216, 1270, 1327, 1499
BstSFI CTRYAG 1 cut(s) 1008
BstV1I GCAGC 8 cut(s) 101, 204, 430, 433, 709, 994, 1022, 1033
BstX2I RGATCY 3 cut(s) 196, 1226, 1232
BstYI RGATCY 3 cut(s) 196, 1226, 1232
BsuRI GGCC 4 cut(s) 1216, 1332, 1362, 1434
BtsCI GGATG 2 cut(s) 684, 1522
BtsI GCAGTG 3 cut(s) 261, 266, 1251
BtsIMutI CAGTG 5 cut(s) 261, 266, 699, 892, 1251
Cac8I GCNNGC 2 cut(s) 184, 896
CaiI CAGNNNCTG 1 cut(s) 427
CciI TCATGA 1 cut(s) 1279
Cfr13I GGNCC 5 cut(s) 560, 844, 1187, 1214, 1361
CseI GACGC 2 cut(s) 113, 676
Csp6I GTAC 3 cut(s) 366, 448, 1058
CspCI CAANNNNNGTGG 2 cut(s) 1123, 1158
CviAII CATG 6 cut(s) 146, 545, 710, 752, 841, 1280
CviQI GTAC 3 cut(s) 366, 448, 1058
DdeI CTNAG 4 cut(s) 351, 476, 533, 1223
DpnI GATC 7 cut(s) 198, 825, 884, 1093, 1228, 1234, 1288
DpnII GATC 7 cut(s) 196, 823, 882, 1091, 1226, 1232, 1286
Eam1104I CTCTTC 1 cut(s) 1323
EarI CTCTTC 1 cut(s) 1323
Ecl136II GAGCTC 1 cut(s) 350
Eco130I CCWWGG 1 cut(s) 1474
Eco147I AGGCCT 1 cut(s) 1434
Eco24I GRGCYC 1 cut(s) 352
Eco31I GGTCTC 1 cut(s) 1464
Eco47I GGWCC 3 cut(s) 560, 844, 1187
Eco53kI GAGCTC 1 cut(s) 350
Eco57I CTGAAG 4 cut(s) 704, 1284, 1304, 1449
EcoICRI GAGCTC 1 cut(s) 350
EcoNI CCTNNNNNAGG 1 cut(s) 489
EcoRI GAATTC 1 cut(s) 1381
EcoRII CCWGG 6 cut(s) 484, 1183, 1216, 1270, 1327, 1499
EcoT14I CCWWGG 1 cut(s) 1474
EcoT38I GRGCYC 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 1474
Esp3I CGTCTC 1 cut(s) 659
FaeI CATG 6 cut(s) 149, 548, 713, 755, 844, 1283
FalI AAGNNNNNCTT 6 cut(s) 268, 300, 483, 515, 509, 541
FaqI GGGAC 1 cut(s) 761
FatI CATG 6 cut(s) 145, 544, 709, 751, 840, 1279
FauI CCCGC 1 cut(s) 929
FbaI TGATCA 2 cut(s) 823, 882
Fnu4HI GCNGC 8 cut(s) 90, 218, 419, 422, 698, 1008, 1011, 1022
FokI GGATG 1 cut(s) 691
FriOI GRGCYC 1 cut(s) 352
Fsp4HI GCNGC 8 cut(s) 90, 218, 419, 422, 698, 1008, 1011, 1022
FspBI CTAG 2 cut(s) 675, 1304
GluI GCNGC 8 cut(s) 90, 218, 419, 422, 698, 1008, 1011, 1022
GsaI CCCAGC 1 cut(s) 1374
HaeIII GGCC 4 cut(s) 1216, 1332, 1362, 1434
HapII CCGG 1 cut(s) 563
HgaI GACGC 2 cut(s) 113, 676
Hin1I GRCGYC 1 cut(s) 124
Hin1II CATG 6 cut(s) 149, 548, 713, 755, 844, 1283
HindIII AAGCTT 1 cut(s) 1482
HinfI GANTC 4 cut(s) 44, 761, 1345, 1493
HpaII CCGG 1 cut(s) 563
Hpy166II GTNNAC 5 cut(s) 373, 473, 690, 869, 1394
Hpy188I TCNGA 5 cut(s) 407, 1201, 1429, 1460, 1469
Hpy188III TCNNGA 6 cut(s) 200, 778, 1042, 1230, 1280, 1514
Hpy8I GTNNAC 5 cut(s) 373, 473, 690, 869, 1394
HpyAV CCTTC 2 cut(s) 1260, 1424
HpyCH4III ACNGT 4 cut(s) 370, 470, 694, 1049
HpyF3I CTNAG 4 cut(s) 351, 476, 533, 1223
Hsp92I GRCGYC 1 cut(s) 124
Hsp92II CATG 6 cut(s) 149, 548, 713, 755, 844, 1283
KpnI GGTACC 1 cut(s) 1061
Ksp22I TGATCA 2 cut(s) 823, 882
Kzo9I GATC 7 cut(s) 196, 823, 882, 1091, 1226, 1232, 1286
LmnI GCTCC 3 cut(s) 1259, 1273, 1418
Lsp1109I GCAGC 8 cut(s) 101, 204, 430, 433, 709, 994, 1022, 1033
LweI GCATC 2 cut(s) 669, 1033
MaeI CTAG 2 cut(s) 675, 1304
MaeIII GTNAC 2 cut(s) 45, 586
MalI GATC 7 cut(s) 198, 825, 884, 1093, 1228, 1234, 1288
MboI GATC 7 cut(s) 196, 823, 882, 1091, 1226, 1232, 1286
MboII GAAGA 3 cut(s) 491, 1101, 1310
MflI RGATCY 3 cut(s) 196, 1226, 1232
MhlI GDGCHC 1 cut(s) 352
MluCI AATT 5 cut(s) 505, 756, 849, 1195, 1381
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 3 cut(s) 142, 752, 1126
MnlI CCTC 9 cut(s) 34, 550, 1048, 1141, 1156, 1326, 1409, 1435, 1445
MroXI GAANNNNTTC 1 cut(s) 1385
MseI TTAA 5 cut(s) 243, 432, 461, 528, 1169
MslI CAYNNNNRTG 1 cut(s) 905
MspI CCGG 1 cut(s) 563
MspR9I CCNGG 6 cut(s) 486, 1185, 1218, 1272, 1329, 1501
MvaI CCWGG 6 cut(s) 486, 1185, 1218, 1272, 1329, 1501
NdeII GATC 7 cut(s) 196, 823, 882, 1091, 1226, 1232, 1286
NlaIII CATG 6 cut(s) 149, 548, 713, 755, 844, 1283
NlaIV GGNNCC 5 cut(s) 561, 1046, 1059, 1234, 1326
NmuCI GTSAC 2 cut(s) 45, 586
NspI RCATGY 1 cut(s) 755
PagI TCATGA 1 cut(s) 1279
PceI AGGCCT 1 cut(s) 1434
PdmI GAANNNNTTC 1 cut(s) 1385
PfeI GAWTC 3 cut(s) 761, 1345, 1493
PflFI GACNNNGTC 1 cut(s) 1205
PkrI GCNGC 8 cut(s) 91, 219, 420, 423, 699, 1009, 1012, 1023
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
Psp124BI GAGCTC 1 cut(s) 352
Psp6I CCWGG 6 cut(s) 484, 1183, 1216, 1270, 1327, 1499
PspFI CCCAGC 1 cut(s) 1370
PspGI CCWGG 6 cut(s) 484, 1183, 1216, 1270, 1327, 1499
PspN4I GGNNCC 5 cut(s) 561, 1046, 1059, 1234, 1326
PspPI GGNCC 5 cut(s) 560, 844, 1187, 1214, 1361
PstI CTGCAG 1 cut(s) 1012
PstNI CAGNNNCTG 1 cut(s) 427
PsuI RGATCY 3 cut(s) 196, 1226, 1232
PsyI GACNNNGTC 1 cut(s) 1205
RsaI GTAC 3 cut(s) 367, 449, 1059
RsaNI GTAC 3 cut(s) 366, 448, 1058
RseI CAYNNNNRTG 1 cut(s) 905
SacI GAGCTC 1 cut(s) 352
SaqAI TTAA 5 cut(s) 243, 432, 461, 528, 1169
SatI GCNGC 8 cut(s) 90, 218, 419, 422, 698, 1008, 1011, 1022
Sau3AI GATC 7 cut(s) 196, 823, 882, 1091, 1226, 1232, 1286
Sau96I GGNCC 5 cut(s) 560, 844, 1187, 1214, 1361
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 6 cut(s) 486, 1185, 1218, 1272, 1329, 1501
SduI GDGCHC 1 cut(s) 352
SfaNI GCATC 2 cut(s) 669, 1033
SfcI CTRYAG 1 cut(s) 1008
SinI GGWCC 3 cut(s) 560, 844, 1187
SmiMI CAYNNNNRTG 1 cut(s) 905
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 5 cut(s) 505, 756, 849, 1195, 1381
SseBI AGGCCT 1 cut(s) 1434
SsiI CCGC 2 cut(s) 551, 922
SspI AATATT 1 cut(s) 361
SspMI CTAG 2 cut(s) 675, 1304
SstI GAGCTC 1 cut(s) 352
StuI AGGCCT 1 cut(s) 1434
StyD4I CCNGG 6 cut(s) 484, 1183, 1216, 1270, 1327, 1499
StyI CCWWGG 1 cut(s) 1474
TaaI ACNGT 4 cut(s) 370, 470, 694, 1049
TaqI TCGA 4 cut(s) 229, 391, 810, 1087
TasI AATT 5 cut(s) 505, 756, 849, 1195, 1381
TfiI GAWTC 3 cut(s) 761, 1345, 1493
Tru1I TTAA 5 cut(s) 243, 432, 461, 528, 1169
Tru9I TTAA 5 cut(s) 243, 432, 461, 528, 1169
TscAI CASTG 5 cut(s) 261, 266, 699, 892, 1251
TseFI GTSAC 2 cut(s) 45, 586
TseI GCWGC 8 cut(s) 89, 217, 418, 421, 697, 1007, 1010, 1021
Tsp45I GTSAC 2 cut(s) 45, 586
TspDTI ATGAA 9 cut(s) 41, 89, 491, 561, 829, 923, 1268, 1296, 1394
TspRI CASTG 5 cut(s) 261, 266, 699, 892, 1251
Tth111I GACNNNGTC 1 cut(s) 1205
VpaK11BI GGWCC 3 cut(s) 560, 844, 1187
XagI CCTNNNNNAGG 1 cut(s) 489
XapI RAATTY 1 cut(s) 1381
XceI RCATGY 1 cut(s) 755
XmnI GAANNNNTTC 1 cut(s) 1385
XspI CTAG 2 cut(s) 675, 1304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.