Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000834.1

Orthogroup ID

OG0008622

Physical Location & Seq

Genomic Coordinates Forward (+)

114337 .. 116742

Gene Structure 2406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000834.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atgctgaagttcacagtgcagcttcaacaccatgctcgtcatcagcttccaacatttcagttgatttttgtgcatgtaattgaatcacttgtctttgtcccaattatgattggcatattgttttttctgttcgagttttacgatgatcaactattggccttcatggtcctaattcttgtctggttgagtgaactgtttaccctgatcagtgttcgcacgcccatatcaatgaagttctttccccgcttctttctgctctactttctggtttttcacatctatttcttttcctatgcttacggtttttcctatttggctctttctacggctgcagcatttatgcagcatctcattctatacttctggaaccgttttgaggtaccaactctacaaaggtttattcaaaatcgaagatcacaactccaacaacacccagatttccacattacttcctccacattccttgcctcaactttgcatatcacaagattaaacacaagaaatcctggtccagtcaattctgacatagtctctgggcctgggctgagatctggatccaatccagcagtgccttcaaatggagctgaagctcctggctttcatgaacgatcaggcaatgagaacccagtgcaaaaccctcttcaggttccaggccaaactgacctgaatcaagcagagaatggcccaaaccccagcactatgaattctttcagttcacttttgttgtggatattaggaggagcttcctctgaaggcctcaactcatttctttctatgttcagagatgtccgagaccaaggacaagcttatgctgaatctcccaggcaagaaaatcaggatggaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Membralin

Protein Analysis

282

Amino Acids

32.19

Weight (kDa)

6.54

Isoelectric Point (pI)

50.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60995
fragaria_vesca	FvH4_5g29191
malus_domestica	MD08G1235100.v1.1 MD15G1426300.v1.1
prunus_persica	Prupe.1G004500_v2.0.a1
pyrus_communis	pycom08g20320 pycom08g20330 pycom15g37730
rosa_chinensis	RchiOBHm_Chr1g0332251
rosa_laevigata	RLG00000002109 RLG00000029682
rosa_multiflora	Rmu_sc0000834.1_g000024 Rmu_sc0004145.1_g000017
rosa_roxburghii	Rroxscaffold_2G00085880 Rroxscaffold_3G00237580
rosa_rugosa	Rorug01G0099700 Rorug07G0204200 Rorug07G0204300
rosa_samantha	Rh1AG123400 Rh1CG117800 Rh1DG128700 Rh7BG335600
rosa_wichuraiana	Rw1G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	379
AccB1I	GGYRCC	1 cut(s)	379
AciI	CCGC	1 cut(s)	244
AclWI	GGATC	2 cut(s)	549, 562
AcsI	RAATTY	1 cut(s)	703
AcuI	CTGAAG	4 cut(s)	26, 606, 626, 771
AfaI	GTAC	1 cut(s)	381
AfiI	CCNNNNNNNGG	3 cut(s)	376, 578, 643
AgsI	TTSAA	4 cut(s)	26, 83, 404, 576
AjnI	CCWGG	5 cut(s)	505, 538, 592, 649, 821
AluBI	AGCT	6 cut(s)	22, 46, 584, 590, 743, 806
AluI	AGCT	6 cut(s)	22, 46, 584, 590, 743, 806
Alw26I	GTCTC	2 cut(s)	535, 786
AlwI	GGATC	2 cut(s)	549, 562
AoxI	GGCC	5 cut(s)	156, 536, 652, 682, 754
ApeKI	GCWGC	4 cut(s)	19, 329, 332, 343
ApoI	RAATTY	1 cut(s)	703
Asp700I	GAANNNNTTC	1 cut(s)	707
Asp718I	GGTACC	1 cut(s)	379
AspS9I	GGNCC	4 cut(s)	166, 509, 536, 683
AvaII	GGWCC	2 cut(s)	166, 509
BamHI	GGATCC	1 cut(s)	554
BanI	GGYRCC	1 cut(s)	379
BbvI	GCAGC	4 cut(s)	31, 316, 344, 355
BccI	CCATC	1 cut(s)	833
BceAI	ACGGC	1 cut(s)	342
BciT130I	CCWGG	5 cut(s)	507, 540, 594, 651, 823
BclI	TGATCA	2 cut(s)	145, 204
BcoDI	GTCTC	2 cut(s)	535, 786
BfmI	CTRYAG	1 cut(s)	330
BglII	AGATCT	1 cut(s)	548
BisI	GCNGC	4 cut(s)	20, 330, 333, 344
BlsI	GCNGC	4 cut(s)	21, 331, 334, 345
Bme1390I	CCNGG	5 cut(s)	507, 540, 594, 651, 823
Bme18I	GGWCC	2 cut(s)	166, 509
BmgT120I	GGNCC	4 cut(s)	166, 509, 536, 683
BmiI	GGNNCC	4 cut(s)	368, 381, 556, 648
BmrFI	CCNGG	5 cut(s)	507, 540, 594, 651, 823
BmrI	ACTGGG	1 cut(s)	620
BmsI	GCATC	1 cut(s)	355
BmuI	ACTGGG	1 cut(s)	620
BsaBI	GATNNNNATC	1 cut(s)	553
BsaI	GGTCTC	1 cut(s)	786
BsaJI	CCNNGG	3 cut(s)	539, 796, 821
Bsc4I	CCNNNNNNNGG	3 cut(s)	376, 578, 643
Bse1I	ACTGG	2 cut(s)	512, 626
Bse3DI	GCAATG	1 cut(s)	622
Bse8I	GATNNNNATC	1 cut(s)	553
BseBI	CCWGG	5 cut(s)	507, 540, 594, 651, 823
BseDI	CCNNGG	3 cut(s)	539, 796, 821
BseGI	GGATG	1 cut(s)	844
BseJI	GATNNNNATC	1 cut(s)	553
BseLI	CCNNNNNNNGG	3 cut(s)	376, 578, 643
BseMI	GCAATG	1 cut(s)	622
BseMII	CTCAG	1 cut(s)	536
BseNI	ACTGG	2 cut(s)	512, 626
BseRI	GAGGAG	1 cut(s)	753
BseXI	GCAGC	4 cut(s)	31, 316, 344, 355
BseYI	CCCAGC	1 cut(s)	692
BsgI	GTGCAG	1 cut(s)	38
BshFI	GGCC	5 cut(s)	158, 538, 654, 684, 756
BshNI	GGYRCC	1 cut(s)	379
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	3 cut(s)	376, 578, 643
BsmAI	GTCTC	2 cut(s)	535, 786
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	5 cut(s)	158, 538, 654, 684, 756
Bso31I	GGTCTC	1 cut(s)	786
Bsp143I	GATC	6 cut(s)	145, 204, 413, 548, 554, 608
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	5 cut(s)	158, 538, 654, 684, 756
BspCNI	CTCAG	1 cut(s)	537
BspHI	TCATGA	1 cut(s)	601
BspLI	GGNNCC	4 cut(s)	368, 381, 556, 648
BspMAI	CTGCAG	1 cut(s)	334
BspPI	GGATC	2 cut(s)	549, 562
BspT107I	GGYRCC	1 cut(s)	379
BspTNI	GGTCTC	1 cut(s)	786
BsrDI	GCAATG	1 cut(s)	622
BsrI	ACTGG	2 cut(s)	512, 626
BssECI	CCNNGG	3 cut(s)	539, 796, 821
BssMI	GATC	6 cut(s)	145, 204, 413, 548, 554, 608
BssT1I	CCWWGG	1 cut(s)	796
Bst2UI	CCWGG	5 cut(s)	507, 540, 594, 651, 823
Bst4CI	ACNGT	4 cut(s)	16, 195, 302, 371
Bst6I	CTCTTC	1 cut(s)	645
BstC8I	GCNNGC	1 cut(s)	218
BstDEI	CTNAG	1 cut(s)	545
BstF5I	GGATG	1 cut(s)	844
BstKTI	GATC	6 cut(s)	148, 207, 416, 551, 557, 611
BstMAI	GTCTC	2 cut(s)	535, 786
BstMBI	GATC	6 cut(s)	145, 204, 413, 548, 554, 608
BstNI	CCWGG	5 cut(s)	507, 540, 594, 651, 823
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	5 cut(s)	505, 538, 592, 649, 821
BstSFI	CTRYAG	1 cut(s)	330
BstV1I	GCAGC	4 cut(s)	31, 316, 344, 355
BstX2I	RGATCY	2 cut(s)	548, 554
BstYI	RGATCY	2 cut(s)	548, 554
BsuRI	GGCC	5 cut(s)	158, 538, 654, 684, 756
BtsCI	GGATG	1 cut(s)	844
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	4 cut(s)	21, 214, 573, 633
Cac8I	GCNNGC	1 cut(s)	218
CciI	TCATGA	1 cut(s)	601
Cfr13I	GGNCC	4 cut(s)	166, 509, 536, 683
Csp6I	GTAC	1 cut(s)	380
CspCI	CAANNNNNGTGG	2 cut(s)	445, 480
CviAII	CATG	4 cut(s)	32, 74, 163, 602
CviQI	GTAC	1 cut(s)	380
DdeI	CTNAG	1 cut(s)	545
DpnI	GATC	6 cut(s)	147, 206, 415, 550, 556, 610
DpnII	GATC	6 cut(s)	145, 204, 413, 548, 554, 608
Eam1104I	CTCTTC	1 cut(s)	645
EarI	CTCTTC	1 cut(s)	645
Eco130I	CCWWGG	1 cut(s)	796
Eco147I	AGGCCT	1 cut(s)	756
Eco31I	GGTCTC	1 cut(s)	786
Eco47I	GGWCC	2 cut(s)	166, 509
Eco57I	CTGAAG	4 cut(s)	26, 606, 626, 771
EcoRI	GAATTC	1 cut(s)	703
EcoRII	CCWGG	5 cut(s)	505, 538, 592, 649, 821
EcoT14I	CCWWGG	1 cut(s)	796
ErhI	CCWWGG	1 cut(s)	796
FaeI	CATG	4 cut(s)	35, 77, 166, 605
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	4 cut(s)	31, 73, 162, 601
FauI	CCCGC	1 cut(s)	251
FbaI	TGATCA	2 cut(s)	145, 204
Fnu4HI	GCNGC	4 cut(s)	20, 330, 333, 344
Fsp4HI	GCNGC	4 cut(s)	20, 330, 333, 344
GluI	GCNGC	4 cut(s)	20, 330, 333, 344
GsaI	CCCAGC	1 cut(s)	696
HaeIII	GGCC	5 cut(s)	158, 538, 654, 684, 756
Hin1II	CATG	4 cut(s)	35, 77, 166, 605
HindIII	AAGCTT	1 cut(s)	804
HinfI	GANTC	3 cut(s)	83, 667, 815
Hpy166II	GTNNAC	4 cut(s)	12, 191, 198, 716
Hpy188I	TCNGA	4 cut(s)	523, 751, 782, 791
Hpy188III	TCNNGA	4 cut(s)	364, 552, 602, 836
Hpy8I	GTNNAC	4 cut(s)	12, 191, 198, 716
HpyAV	CCTTC	3 cut(s)	169, 582, 746
HpyCH4III	ACNGT	4 cut(s)	16, 195, 302, 371
HpyCH4V	TGCA	6 cut(s)	19, 73, 332, 343, 478, 631
HpyF3I	CTNAG	1 cut(s)	545
Hsp92II	CATG	4 cut(s)	35, 77, 166, 605
KpnI	GGTACC	1 cut(s)	383
Ksp22I	TGATCA	2 cut(s)	145, 204
Kzo9I	GATC	6 cut(s)	145, 204, 413, 548, 554, 608
LmnI	GCTCC	3 cut(s)	581, 595, 740
Lsp1109I	GCAGC	4 cut(s)	31, 316, 344, 355
LweI	GCATC	1 cut(s)	355
MalI	GATC	6 cut(s)	147, 206, 415, 550, 556, 610
MboI	GATC	6 cut(s)	145, 204, 413, 548, 554, 608
MboII	GAAGA	2 cut(s)	423, 632
MflI	RGATCY	2 cut(s)	548, 554
MluCI	AATT	5 cut(s)	78, 102, 171, 517, 703
MmeI	TCCRAC	2 cut(s)	74, 448
MnlI	CCTC	7 cut(s)	370, 463, 478, 648, 731, 757, 767
MroXI	GAANNNNTTC	1 cut(s)	707
MseI	TTAA	1 cut(s)	491
MslI	CAYNNNNRTG	1 cut(s)	227
MspR9I	CCNGG	5 cut(s)	507, 540, 594, 651, 823
MvaI	CCWGG	5 cut(s)	507, 540, 594, 651, 823
NdeII	GATC	6 cut(s)	145, 204, 413, 548, 554, 608
NlaIII	CATG	4 cut(s)	35, 77, 166, 605
NlaIV	GGNNCC	4 cut(s)	368, 381, 556, 648
NspI	RCATGY	1 cut(s)	77
PagI	TCATGA	1 cut(s)	601
PceI	AGGCCT	1 cut(s)	756
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PdmI	GAANNNNTTC	1 cut(s)	707
PfeI	GAWTC	3 cut(s)	83, 667, 815
PflFI	GACNNNGTC	1 cut(s)	527
PkrI	GCNGC	4 cut(s)	21, 331, 334, 345
Psp6I	CCWGG	5 cut(s)	505, 538, 592, 649, 821
PspFI	CCCAGC	1 cut(s)	692
PspGI	CCWGG	5 cut(s)	505, 538, 592, 649, 821
PspN4I	GGNNCC	4 cut(s)	368, 381, 556, 648
PspPI	GGNCC	4 cut(s)	166, 509, 536, 683
PstI	CTGCAG	1 cut(s)	334
PsuI	RGATCY	2 cut(s)	548, 554
PsyI	GACNNNGTC	1 cut(s)	527
RsaI	GTAC	1 cut(s)	381
RsaNI	GTAC	1 cut(s)	380
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	491
SatI	GCNGC	4 cut(s)	20, 330, 333, 344
Sau3AI	GATC	6 cut(s)	145, 204, 413, 548, 554, 608
Sau96I	GGNCC	4 cut(s)	166, 509, 536, 683
ScrFI	CCNGG	5 cut(s)	507, 540, 594, 651, 823
SfaNI	GCATC	1 cut(s)	355
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	2 cut(s)	166, 509
SmiMI	CAYNNNNRTG	1 cut(s)	227
Sse9I	AATT	5 cut(s)	78, 102, 171, 517, 703
SseBI	AGGCCT	1 cut(s)	756
SsiI	CCGC	1 cut(s)	244
StuI	AGGCCT	1 cut(s)	756
StyD4I	CCNGG	5 cut(s)	505, 538, 592, 649, 821
StyI	CCWWGG	1 cut(s)	796
TaaI	ACNGT	4 cut(s)	16, 195, 302, 371
TaqI	TCGA	2 cut(s)	132, 409
TasI	AATT	5 cut(s)	78, 102, 171, 517, 703
TfiI	GAWTC	3 cut(s)	83, 667, 815
Tru1I	TTAA	1 cut(s)	491
Tru9I	TTAA	1 cut(s)	491
TscAI	CASTG	4 cut(s)	21, 214, 573, 633
TseI	GCWGC	4 cut(s)	19, 329, 332, 343
TspDTI	ATGAA	5 cut(s)	151, 245, 590, 618, 716
TspRI	CASTG	4 cut(s)	21, 214, 573, 633
Tth111I	GACNNNGTC	1 cut(s)	527
VpaK11BI	GGWCC	2 cut(s)	166, 509
XapI	RAATTY	1 cut(s)	703
XceI	RCATGY	1 cut(s)	77
XmnI	GAANNNNTTC	1 cut(s)	707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.